Wall clock time and date at job start Mon Mar 30 2020 00:46:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34893 * 117.00258 * 2 1 4 4 O 1.21621 * 119.99823 * 359.97438 * 3 2 1 5 5 C 1.46478 * 120.00194 * 179.97438 * 3 2 1 6 6 C 1.36639 * 125.99380 * 180.02562 * 5 3 2 7 7 C 1.40315 * 106.69806 * 179.97438 * 6 5 3 8 8 C 1.35169 * 107.12456 * 359.97438 * 7 6 5 9 9 C 1.50704 * 125.60385 * 180.02562 * 8 7 6 10 10 N 1.46898 * 109.47041 * 89.99727 * 9 8 7 11 11 C 1.46906 * 110.99888 * 179.97438 * 10 9 8 12 12 C 1.52993 * 109.47378 * 180.02562 * 11 10 9 13 13 C 1.52996 * 109.47473 * 179.97438 * 12 11 10 14 14 C 1.50699 * 109.47239 * 179.97438 * 13 12 11 15 15 H 1.08003 * 119.99960 * 0.02562 * 14 13 12 16 16 C 1.37882 * 119.99798 * 179.97438 * 14 13 12 17 17 N 1.31508 * 120.00253 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 119.99629 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47142 * 60.00574 * 18 16 14 20 20 H 1.48506 * 109.47042 * 180.02562 * 18 16 14 21 21 H 1.48492 * 109.47444 * 300.00415 * 18 16 14 22 22 O 1.33904 * 108.78525 * 0.26014 * 8 7 6 23 23 H 1.09000 * 109.46855 * 60.00205 * 1 2 3 24 24 H 1.08997 * 109.47274 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47059 * 299.99905 * 1 2 3 26 26 H 1.08001 * 126.65077 * 359.97438 * 6 5 3 27 27 H 1.07993 * 126.43388 * 180.02562 * 7 6 5 28 28 H 1.08997 * 109.46924 * 329.99639 * 9 8 7 29 29 H 1.08995 * 109.46962 * 209.99793 * 9 8 7 30 30 H 1.00901 * 111.00121 * 56.04537 * 10 9 8 31 31 H 1.09004 * 109.47040 * 299.99934 * 11 10 9 32 32 H 1.09000 * 109.47033 * 59.99886 * 11 10 9 33 33 H 1.09004 * 109.46862 * 299.99897 * 12 11 10 34 34 H 1.09004 * 109.46998 * 59.99419 * 12 11 10 35 35 H 1.08996 * 109.47261 * 300.00171 * 13 12 11 36 36 H 1.09000 * 109.46870 * 59.99782 * 13 12 11 37 37 H 0.97001 * 120.00663 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0644 1.2019 0.0000 4 8 1.4021 2.2219 -0.0005 5 6 3.5272 1.2785 0.0006 6 6 4.2713 2.4245 0.0011 7 6 5.6181 2.0308 0.0021 8 6 5.6376 0.6793 0.0027 9 6 6.8755 -0.1803 0.0044 10 7 7.2762 -0.4589 1.3899 11 6 8.4821 -1.2970 1.4308 12 6 8.8674 -1.5657 2.8868 13 6 10.1229 -2.4391 2.9293 14 6 10.5027 -2.7032 4.3636 15 1 9.9078 -2.2898 5.1646 16 6 11.6091 -3.4735 4.6530 17 7 12.3331 -3.9772 3.6776 18 14 12.0795 -3.8014 6.4308 19 1 10.9646 -4.5030 7.1165 20 1 13.2982 -4.6491 6.4721 21 1 12.3499 -2.5127 7.1172 22 8 4.3763 0.2298 -0.0036 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 3.8956 3.4371 0.0008 27 1 6.4775 2.6848 0.0032 28 1 7.6820 0.3433 -0.5088 29 1 6.6668 -1.1187 -0.5092 30 1 6.5216 -0.8863 1.9057 31 1 8.2841 -2.2433 0.9272 32 1 9.3000 -0.7816 0.9273 33 1 9.0652 -0.6197 3.3908 34 1 8.0493 -2.0813 3.3899 35 1 9.9247 -3.3851 2.4255 36 1 10.9410 -1.9239 2.4261 37 1 13.1117 -4.5188 3.8812 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000182195288.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:43 Heat of formation + Delta-G solvation = -80.494904 kcal Electronic energy + Delta-G solvation = -18909.260479 eV Core-core repulsion = 15653.233184 eV Total energy + Delta-G solvation = -3256.027295 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.00319 -40.49840 -36.89674 -36.69031 -33.82028 -33.32336 -31.90088 -30.34137 -28.36764 -26.83357 -25.02803 -22.99256 -22.25470 -21.88144 -20.71257 -20.13789 -18.73793 -17.39702 -17.10839 -16.42649 -16.14195 -15.87900 -15.60534 -14.61374 -14.39314 -14.17265 -13.89763 -13.58502 -13.43931 -13.26199 -12.78895 -12.63492 -12.46739 -12.15569 -11.64250 -11.45277 -11.22175 -11.22152 -10.83602 -10.62554 -10.56659 -10.32071 -9.73436 -9.41750 -9.11558 -8.90702 -8.39160 -8.34453 -6.00191 -4.02387 0.52093 1.94487 1.99471 2.58925 2.67665 3.33918 3.38025 3.40870 4.17295 4.42269 4.50052 4.56979 4.60552 4.72238 4.81011 5.09367 5.14167 5.23425 5.28578 5.35692 5.54210 5.59323 5.68763 5.78516 5.84952 6.05255 6.23185 6.59547 6.62082 6.66527 7.07794 7.13581 7.28618 7.39890 7.66670 7.80872 7.99684 8.42753 9.04476 9.61676 11.11205 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.033182 B = 0.002576 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.634403 B =10865.001147 C =11240.191518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.348 6.348 3 C 0.556 3.444 4 O -0.491 6.491 5 C -0.078 4.078 6 C -0.097 4.097 7 C -0.206 4.206 8 C 0.047 3.953 9 C 0.130 3.870 10 N -0.686 5.686 11 C 0.058 3.942 12 C -0.107 4.107 13 C 0.022 3.978 14 C -0.520 4.520 15 H 0.055 0.945 16 C 0.056 3.944 17 N -0.897 5.897 18 Si 0.893 3.107 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.276 1.276 22 O -0.150 6.150 23 H 0.066 0.934 24 H 0.106 0.894 25 H 0.066 0.934 26 H 0.164 0.836 27 H 0.164 0.836 28 H 0.110 0.890 29 H 0.053 0.947 30 H 0.344 0.656 31 H 0.030 0.970 32 H 0.072 0.928 33 H 0.058 0.942 34 H 0.046 0.954 35 H 0.014 0.986 36 H 0.017 0.983 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.569 9.853 -10.824 24.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.264 6.264 3 C 0.401 3.599 4 O -0.381 6.381 5 C -0.128 4.128 6 C -0.117 4.117 7 C -0.225 4.225 8 C -0.006 4.006 9 C 0.001 3.999 10 N -0.318 5.318 11 C -0.069 4.069 12 C -0.146 4.146 13 C -0.015 4.015 14 C -0.559 4.559 15 H 0.073 0.927 16 C -0.145 4.145 17 N -0.536 5.536 18 Si 0.721 3.279 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.202 1.202 22 O -0.046 6.046 23 H 0.084 0.916 24 H 0.124 0.876 25 H 0.085 0.915 26 H 0.182 0.818 27 H 0.181 0.819 28 H 0.128 0.872 29 H 0.071 0.929 30 H 0.162 0.838 31 H 0.048 0.952 32 H 0.091 0.909 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.033 0.967 36 H 0.035 0.965 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -19.400 10.292 -10.800 24.473 hybrid contribution -0.212 -0.883 0.711 1.154 sum -19.612 9.408 -10.089 23.978 Atomic orbital electron populations 1.23368 0.75304 1.04217 1.02837 1.86681 1.24022 1.31773 1.83961 1.19195 0.85551 0.82096 0.73072 1.90942 1.64441 1.35908 1.46788 1.20575 0.87751 0.86324 1.18147 1.22016 0.92518 0.98701 0.98462 1.21643 0.97537 0.94361 1.08999 1.23021 0.83414 0.94467 0.99748 1.20557 0.89371 0.97148 0.92785 1.60671 1.08723 1.52097 1.10327 1.22204 0.90689 0.93812 1.00226 1.21638 0.99987 1.00688 0.92240 1.19061 0.91218 0.94171 0.97064 1.21214 1.10869 1.31314 0.92466 0.92698 1.25026 0.96428 0.95863 0.97178 1.69947 1.17521 1.34739 1.31401 0.86648 0.77811 0.78256 0.85228 1.20262 1.21311 1.20208 1.84094 1.15551 1.34734 1.70175 0.91556 0.87605 0.91485 0.81807 0.81866 0.87246 0.92929 0.83841 0.95185 0.90939 0.92373 0.93508 0.96742 0.96500 0.92953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.25 10.57 101.05 1.07 1.32 16 2 O -0.35 -3.79 10.58 -42.46 -0.45 -4.23 16 3 C 0.56 6.69 7.93 34.05 0.27 6.96 16 4 O -0.49 -6.49 16.66 -19.36 -0.32 -6.82 16 5 C -0.08 -0.94 7.18 -36.84 -0.26 -1.21 16 6 C -0.10 -1.03 10.62 -39.38 -0.42 -1.45 16 7 C -0.21 -2.12 10.77 -39.89 -0.43 -2.55 16 8 C 0.05 0.53 6.82 -35.40 -0.24 0.29 16 9 C 0.13 1.43 6.21 -4.97 -0.03 1.40 16 10 N -0.69 -9.33 6.49 -115.06 -0.75 -10.08 16 11 C 0.06 0.93 5.68 -3.82 -0.02 0.91 16 12 C -0.11 -2.15 5.41 -26.74 -0.14 -2.30 16 13 C 0.02 0.57 4.97 -27.89 -0.14 0.43 16 14 C -0.52 -14.72 9.11 -34.44 -0.31 -15.03 16 15 H 0.05 1.51 7.74 -52.48 -0.41 1.10 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 17 N -0.90 -26.88 13.29 55.43 0.74 -26.14 16 18 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 O -0.15 -1.90 10.67 4.77 0.05 -1.85 16 23 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.16 1.42 8.06 -52.49 -0.42 0.99 16 27 H 0.16 1.36 8.06 -52.49 -0.42 0.94 16 28 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.34 4.63 8.72 -39.29 -0.34 4.28 16 31 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 329.73 15.07 4.97 4.97 Total: -1.00 -32.02 329.73 -6.93 -38.94 By element: Atomic # 1 Polarization: 3.65 SS G_CDS: -5.38 Total: -1.73 kcal Atomic # 6 Polarization: -8.95 SS G_CDS: -0.76 Total: -9.71 kcal Atomic # 7 Polarization: -36.21 SS G_CDS: -0.01 Total: -36.22 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: -0.72 Total: -12.90 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.02 -6.93 -38.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182195288.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.551 kcal (2) G-P(sol) polarization free energy of solvation -32.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds