Wall clock time and date at job start Mon Mar 30 2020 00:46:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34893 * 117.00258 * 2 1 4 4 O 1.21621 * 119.99823 * 359.97438 * 3 2 1 5 5 C 1.46478 * 120.00194 * 179.97438 * 3 2 1 6 6 C 1.36639 * 125.99380 * 180.02562 * 5 3 2 7 7 C 1.40315 * 106.69806 * 179.97438 * 6 5 3 8 8 C 1.35169 * 107.12456 * 359.97438 * 7 6 5 9 9 C 1.50704 * 125.60385 * 180.02562 * 8 7 6 10 10 N 1.46898 * 109.47041 * 89.99727 * 9 8 7 11 11 C 1.46906 * 110.99888 * 179.97438 * 10 9 8 12 12 C 1.52993 * 109.47378 * 180.02562 * 11 10 9 13 13 C 1.52996 * 109.47473 * 179.97438 * 12 11 10 14 14 C 1.50699 * 109.47239 * 179.97438 * 13 12 11 15 15 H 1.08003 * 119.99960 * 0.02562 * 14 13 12 16 16 C 1.37882 * 119.99798 * 179.97438 * 14 13 12 17 17 N 1.31508 * 120.00253 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 119.99629 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47142 * 60.00574 * 18 16 14 20 20 H 1.48506 * 109.47042 * 180.02562 * 18 16 14 21 21 H 1.48492 * 109.47444 * 300.00415 * 18 16 14 22 22 O 1.33904 * 108.78525 * 0.26014 * 8 7 6 23 23 H 1.09000 * 109.46855 * 60.00205 * 1 2 3 24 24 H 1.08997 * 109.47274 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47059 * 299.99905 * 1 2 3 26 26 H 1.08001 * 126.65077 * 359.97438 * 6 5 3 27 27 H 1.07993 * 126.43388 * 180.02562 * 7 6 5 28 28 H 1.08997 * 109.46924 * 329.99639 * 9 8 7 29 29 H 1.08995 * 109.46962 * 209.99793 * 9 8 7 30 30 H 1.00901 * 111.00121 * 56.04537 * 10 9 8 31 31 H 1.09004 * 109.47040 * 299.99934 * 11 10 9 32 32 H 1.09000 * 109.47033 * 59.99886 * 11 10 9 33 33 H 1.09004 * 109.46862 * 299.99897 * 12 11 10 34 34 H 1.09004 * 109.46998 * 59.99419 * 12 11 10 35 35 H 1.08996 * 109.47261 * 300.00171 * 13 12 11 36 36 H 1.09000 * 109.46870 * 59.99782 * 13 12 11 37 37 H 0.97001 * 120.00663 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0644 1.2019 0.0000 4 8 1.4021 2.2219 -0.0005 5 6 3.5272 1.2785 0.0006 6 6 4.2713 2.4245 0.0011 7 6 5.6181 2.0308 0.0021 8 6 5.6376 0.6793 0.0027 9 6 6.8755 -0.1803 0.0044 10 7 7.2762 -0.4589 1.3899 11 6 8.4821 -1.2970 1.4308 12 6 8.8674 -1.5657 2.8868 13 6 10.1229 -2.4391 2.9293 14 6 10.5027 -2.7032 4.3636 15 1 9.9078 -2.2898 5.1646 16 6 11.6091 -3.4735 4.6530 17 7 12.3331 -3.9772 3.6776 18 14 12.0795 -3.8014 6.4308 19 1 10.9646 -4.5030 7.1165 20 1 13.2982 -4.6491 6.4721 21 1 12.3499 -2.5127 7.1172 22 8 4.3763 0.2298 -0.0036 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 3.8956 3.4371 0.0008 27 1 6.4775 2.6848 0.0032 28 1 7.6820 0.3433 -0.5088 29 1 6.6668 -1.1187 -0.5092 30 1 6.5216 -0.8863 1.9057 31 1 8.2841 -2.2433 0.9272 32 1 9.3000 -0.7816 0.9273 33 1 9.0652 -0.6197 3.3908 34 1 8.0493 -2.0813 3.3899 35 1 9.9247 -3.3851 2.4255 36 1 10.9410 -1.9239 2.4261 37 1 13.1117 -4.5188 3.8812 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000182195288.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:42 Heat of formation + Delta-G solvation = -100.995000 kcal Electronic energy + Delta-G solvation = -18910.149430 eV Core-core repulsion = 15653.233184 eV Total energy + Delta-G solvation = -3256.916246 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.86114 -41.34878 -37.92273 -37.72968 -35.59705 -34.28039 -33.49157 -31.55289 -29.29314 -28.11197 -26.37929 -24.21480 -23.50901 -22.76645 -21.94906 -21.42932 -19.58176 -18.49276 -18.22687 -17.95791 -17.09403 -16.96495 -16.62815 -16.50355 -15.42375 -15.34207 -15.11683 -14.41131 -14.34327 -14.23411 -14.05026 -13.88486 -13.49308 -13.42075 -13.12362 -12.99714 -12.60710 -12.46156 -12.26049 -12.10519 -11.94884 -11.50891 -11.38977 -11.17205 -11.11018 -10.52917 -9.83043 -9.46145 -8.18700 -6.29180 -0.35779 1.10933 1.19045 1.41367 1.44060 1.51975 1.72836 1.88177 2.42355 3.14563 3.20933 3.50484 3.78262 3.81599 4.20863 4.23944 4.24718 4.29304 4.41004 4.42925 4.50809 4.65672 4.72488 4.75590 4.85103 4.99619 5.05128 5.11205 5.25929 5.28354 5.53635 5.75083 5.77882 5.87922 5.91719 6.27489 6.29778 6.43931 6.87836 7.39860 8.92825 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.033182 B = 0.002576 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.634403 B =10865.001147 C =11240.191518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.360 6.360 3 C 0.556 3.444 4 O -0.510 6.510 5 C -0.099 4.099 6 C -0.092 4.092 7 C -0.200 4.200 8 C 0.037 3.963 9 C 0.133 3.867 10 N -0.688 5.688 11 C 0.072 3.928 12 C -0.094 4.094 13 C 0.025 3.975 14 C -0.545 4.545 15 H 0.058 0.942 16 C -0.001 4.001 17 N -0.933 5.933 18 Si 0.963 3.037 19 H -0.268 1.268 20 H -0.283 1.283 21 H -0.267 1.267 22 O -0.165 6.165 23 H 0.071 0.929 24 H 0.133 0.867 25 H 0.069 0.931 26 H 0.182 0.818 27 H 0.185 0.815 28 H 0.129 0.871 29 H 0.060 0.940 30 H 0.344 0.656 31 H 0.031 0.969 32 H 0.076 0.924 33 H 0.054 0.946 34 H 0.047 0.953 35 H -0.008 1.008 36 H -0.005 1.005 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.122 10.490 -10.451 24.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.276 6.276 3 C 0.402 3.598 4 O -0.401 6.401 5 C -0.149 4.149 6 C -0.112 4.112 7 C -0.219 4.219 8 C -0.016 4.016 9 C 0.005 3.995 10 N -0.320 5.320 11 C -0.056 4.056 12 C -0.132 4.132 13 C -0.013 4.013 14 C -0.583 4.583 15 H 0.076 0.924 16 C -0.198 4.198 17 N -0.573 5.573 18 Si 0.788 3.212 19 H -0.193 1.193 20 H -0.208 1.208 21 H -0.192 1.192 22 O -0.061 6.061 23 H 0.090 0.910 24 H 0.151 0.849 25 H 0.088 0.912 26 H 0.199 0.801 27 H 0.203 0.797 28 H 0.147 0.853 29 H 0.078 0.922 30 H 0.162 0.838 31 H 0.050 0.950 32 H 0.095 0.905 33 H 0.073 0.927 34 H 0.066 0.934 35 H 0.011 0.989 36 H 0.014 0.986 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -19.974 10.931 -10.433 25.046 hybrid contribution -0.089 -1.084 0.555 1.221 sum -20.064 9.847 -9.878 24.435 Atomic orbital electron populations 1.23703 0.73278 1.06223 1.03282 1.86669 1.26128 1.31242 1.83568 1.19256 0.85682 0.82198 0.72637 1.90920 1.64851 1.36424 1.47951 1.20809 0.87986 0.86795 1.19306 1.22328 0.92563 0.99153 0.97131 1.21949 0.98075 0.94182 1.07722 1.23149 0.83132 0.95009 1.00339 1.20626 0.89862 0.97814 0.91224 1.60573 1.07995 1.51180 1.12241 1.21890 0.92020 0.94506 0.97186 1.21383 0.97425 0.99180 0.95261 1.18968 0.93021 0.93897 0.95386 1.21691 1.11223 1.31442 0.93897 0.92382 1.25960 0.96394 0.95571 1.01905 1.70074 1.18040 1.35417 1.33769 0.85532 0.77684 0.78459 0.79571 1.19284 1.20814 1.19220 1.84068 1.16088 1.35288 1.70678 0.90983 0.84879 0.91216 0.80097 0.79735 0.85343 0.92211 0.83801 0.95037 0.90522 0.92749 0.93388 0.98920 0.98620 0.92768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.57 113.37 1.20 1.55 16 2 O -0.36 -7.64 10.58 -56.69 -0.60 -8.24 16 3 C 0.56 13.20 7.93 69.97 0.55 13.75 16 4 O -0.51 -13.29 16.66 19.44 0.32 -12.97 16 5 C -0.10 -2.33 7.18 24.04 0.17 -2.15 16 6 C -0.09 -1.80 10.62 22.40 0.24 -1.57 16 7 C -0.20 -3.69 10.77 22.07 0.24 -3.45 16 8 C 0.04 0.77 6.82 24.98 0.17 0.94 16 9 C 0.13 2.64 6.21 85.56 0.53 3.17 16 10 N -0.69 -17.56 6.49 -517.93 -3.36 -20.92 16 11 C 0.07 2.23 5.68 86.30 0.49 2.72 16 12 C -0.09 -3.76 5.41 30.59 0.17 -3.59 16 13 C 0.02 1.29 4.97 29.85 0.15 1.44 16 14 C -0.54 -30.99 9.11 25.60 0.23 -30.75 16 15 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 16 C 0.00 -0.03 5.46 84.66 0.46 0.43 16 17 N -0.93 -56.52 13.29 21.45 0.28 -56.23 16 18 Si 0.96 44.22 29.54 68.60 2.03 46.25 16 19 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 20 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 21 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 22 O -0.17 -4.04 10.67 -4.79 -0.05 -4.09 16 23 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 24 H 0.13 0.90 8.14 -2.39 -0.02 0.88 16 25 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.18 2.79 8.06 -2.91 -0.02 2.77 16 27 H 0.19 2.52 8.06 -2.91 -0.02 2.50 16 28 H 0.13 2.08 8.14 -2.39 -0.02 2.06 16 29 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.34 8.79 8.72 -89.69 -0.78 8.01 16 31 H 0.03 0.96 8.14 -2.38 -0.02 0.94 16 32 H 0.08 2.31 8.14 -2.39 -0.02 2.30 16 33 H 0.05 2.19 8.14 -2.38 -0.02 2.17 16 34 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 35 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 36 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 37 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 Total: -1.00 -68.49 329.73 3.51 -64.98 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: 0.28 Total: 8.72 kcal Atomic # 6 Polarization: -22.10 SS G_CDS: 4.60 Total: -17.50 kcal Atomic # 7 Polarization: -74.07 SS G_CDS: -3.08 Total: -77.15 kcal Atomic # 8 Polarization: -24.97 SS G_CDS: -0.33 Total: -25.30 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -68.49 3.51 -64.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182195288.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.018 kcal (2) G-P(sol) polarization free energy of solvation -68.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds