Wall clock time and date at job start Mon Mar 30 2020 00:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 114.00111 * 2 1 4 4 C 1.52997 * 109.47083 * 179.97438 * 3 2 1 5 5 C 1.50702 * 109.47266 * 180.02562 * 4 3 2 6 6 O 1.21287 * 119.99578 * 0.02562 * 5 4 3 7 7 N 1.34773 * 120.00755 * 180.02562 * 5 4 3 8 8 C 1.46493 * 120.00646 * 179.97438 * 7 5 4 9 9 C 1.50695 * 109.47443 * 270.00265 * 8 7 5 10 10 H 1.08001 * 120.00056 * 359.97438 * 9 8 7 11 11 C 1.37877 * 120.00480 * 179.97438 * 9 8 7 12 12 N 1.31517 * 119.99528 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 120.00487 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.46897 * 89.99800 * 13 11 9 15 15 H 1.48496 * 109.47501 * 210.00050 * 13 11 9 16 16 H 1.48501 * 109.46824 * 330.00136 * 13 11 9 17 17 C 1.46505 * 119.99455 * 0.02562 * 7 5 4 18 18 C 1.50703 * 109.47064 * 90.00114 * 17 7 5 19 19 C 1.34515 * 125.79060 * 89.99944 * 18 17 7 20 20 C 1.41380 * 106.83832 * 179.97438 * 19 18 17 21 21 C 1.34506 * 106.84493 * 359.97438 * 20 19 18 22 22 O 1.34306 * 125.78568 * 269.69282 * 18 17 7 23 23 H 1.08994 * 109.47031 * 59.99975 * 1 2 3 24 24 H 1.09004 * 109.46870 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.46812 * 299.99722 * 1 2 3 26 26 H 1.09006 * 109.46794 * 60.00460 * 3 2 1 27 27 H 1.09002 * 109.46995 * 300.00400 * 3 2 1 28 28 H 1.09004 * 109.47424 * 60.00564 * 4 3 2 29 29 H 1.09002 * 109.47551 * 300.00083 * 4 3 2 30 30 H 1.09006 * 109.46911 * 30.00087 * 8 7 5 31 31 H 1.08996 * 109.47170 * 149.99599 * 8 7 5 32 32 H 0.97003 * 119.99687 * 180.02562 * 12 11 9 33 33 H 1.09002 * 109.47068 * 210.00083 * 17 7 5 34 34 H 1.09001 * 109.47372 * 330.00170 * 17 7 5 35 35 H 1.07996 * 126.58016 * 0.03378 * 19 18 17 36 36 H 1.08006 * 126.57610 * 179.97438 * 20 19 18 37 37 H 1.08005 * 125.79499 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1485 2.5613 0.0013 6 8 3.4356 3.5425 0.0017 7 7 5.4888 2.7023 0.0014 8 6 6.0847 4.0406 0.0014 9 6 6.2891 4.4995 -1.4193 10 1 6.0041 3.8583 -2.2402 11 6 6.8400 5.7381 -1.6712 12 7 7.1867 6.5192 -0.6715 13 14 7.0941 6.3068 -3.4323 14 1 5.8821 7.0262 -3.8998 15 1 8.2652 7.2176 -3.4944 16 1 7.3368 5.1283 -4.3028 17 6 6.3499 1.5170 0.0003 18 6 6.6452 1.1119 -1.4209 19 6 7.6821 1.5418 -2.1622 20 6 7.5729 0.9120 -3.4232 21 6 6.4763 0.1345 -3.3770 22 8 5.9209 0.2560 -2.1602 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.6887 1.8463 0.8901 27 1 1.6886 1.8464 -0.8900 28 1 3.8575 0.6436 -0.8892 29 1 3.8568 0.6438 0.8908 30 1 5.4194 4.7345 0.5153 31 1 7.0454 4.0105 0.5154 32 1 7.5739 7.3907 -0.8487 33 1 7.2835 1.7457 0.5144 34 1 5.8435 0.6995 0.5134 35 1 8.4510 2.2343 -1.8530 36 1 8.2418 1.0321 -4.2627 37 1 6.1070 -0.4853 -4.1807 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263897238.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:35 Heat of formation + Delta-G solvation = -64.800633 kcal Electronic energy + Delta-G solvation = -20814.976912 eV Core-core repulsion = 17559.630171 eV Total energy + Delta-G solvation = -3255.346741 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.09286 -39.20342 -37.59898 -35.24447 -32.79253 -32.50411 -31.42090 -29.99243 -27.62633 -26.43072 -25.29480 -23.81245 -21.96142 -21.27117 -20.29618 -18.49325 -17.21647 -16.90387 -16.44787 -16.02143 -15.63093 -15.53532 -15.02830 -14.68456 -14.64949 -14.06842 -13.90229 -13.06367 -12.57370 -12.45808 -12.38726 -12.21674 -12.11739 -11.83305 -11.46988 -11.26809 -11.17439 -10.97308 -10.90707 -10.60071 -10.20629 -9.69211 -9.58680 -9.37791 -9.01748 -8.42982 -8.11105 -7.76749 -6.03604 -4.06147 2.12014 3.05674 3.25874 3.31593 3.37874 3.41315 3.51944 3.57350 4.23340 4.47656 5.06319 5.09717 5.16426 5.24988 5.29749 5.32236 5.36580 5.46858 5.49981 5.61032 5.62394 5.75298 5.83101 5.99351 6.09428 6.25437 6.46106 6.52190 6.94685 6.99549 7.20021 7.38259 7.45825 7.59827 7.93530 8.23323 8.27449 8.87739 9.03012 9.58297 11.04933 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.015621 B = 0.006835 C = 0.005516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.064016 B = 4095.713454 C = 5075.278783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.397 6.397 3 C 0.078 3.922 4 C -0.143 4.143 5 C 0.514 3.486 6 O -0.537 6.537 7 N -0.594 5.594 8 C 0.244 3.756 9 C -0.516 4.516 10 H 0.059 0.941 11 C 0.062 3.938 12 N -0.897 5.897 13 Si 0.892 3.108 14 H -0.281 1.281 15 H -0.286 1.286 16 H -0.273 1.273 17 C 0.195 3.805 18 C -0.030 4.030 19 C -0.170 4.170 20 C -0.214 4.214 21 C -0.053 4.053 22 O -0.179 6.179 23 H 0.040 0.960 24 H 0.083 0.917 25 H 0.040 0.960 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.100 0.900 29 H 0.094 0.906 30 H 0.046 0.954 31 H 0.034 0.966 32 H 0.262 0.738 33 H 0.108 0.892 34 H 0.084 0.916 35 H 0.150 0.850 36 H 0.141 0.859 37 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.745 -14.604 0.083 15.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.316 6.316 3 C 0.002 3.998 4 C -0.183 4.183 5 C 0.301 3.699 6 O -0.415 6.415 7 N -0.325 5.325 8 C 0.126 3.874 9 C -0.555 4.555 10 H 0.077 0.923 11 C -0.140 4.140 12 N -0.536 5.536 13 Si 0.720 3.280 14 H -0.207 1.207 15 H -0.212 1.212 16 H -0.198 1.198 17 C 0.070 3.930 18 C -0.081 4.081 19 C -0.190 4.190 20 C -0.233 4.233 21 C -0.121 4.121 22 O -0.076 6.076 23 H 0.059 0.941 24 H 0.101 0.899 25 H 0.059 0.941 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.119 0.881 29 H 0.112 0.888 30 H 0.064 0.936 31 H 0.052 0.948 32 H 0.072 0.928 33 H 0.126 0.874 34 H 0.102 0.898 35 H 0.168 0.832 36 H 0.159 0.841 37 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -4.180 -14.174 0.258 14.780 hybrid contribution 0.285 0.776 -1.438 1.659 sum -3.895 -13.398 -1.181 14.003 Atomic orbital electron populations 1.22693 0.81158 1.02301 1.00107 1.87794 1.19617 1.28619 1.95564 1.22185 0.92441 0.83572 1.01641 1.21592 0.94941 0.96735 1.05048 1.20140 0.82696 0.90191 0.76860 1.90682 1.60313 1.40805 1.49679 1.48329 1.04637 1.08357 1.71204 1.19383 0.93541 0.76679 0.97841 1.21402 1.40436 1.01470 0.92167 0.92294 1.24886 0.95633 0.96350 0.97106 1.69930 1.42923 1.10193 1.30577 0.86574 0.77643 0.78642 0.85106 1.20703 1.21229 1.19813 1.19846 0.97221 0.88521 0.87380 1.22959 0.93285 0.95549 0.96302 1.21607 1.01274 1.02420 0.93659 1.21811 1.00481 1.01651 0.99374 1.23839 0.96407 1.04806 0.87054 1.83963 1.48277 1.52637 1.22683 0.94106 0.89872 0.94119 0.92502 0.92452 0.88149 0.88783 0.93595 0.94800 0.92820 0.87365 0.89822 0.83240 0.84107 0.78838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 101.05 1.11 1.48 16 2 O -0.40 -5.69 10.70 -35.23 -0.38 -6.07 16 3 C 0.08 1.22 5.23 37.16 0.19 1.42 16 4 C -0.14 -2.30 4.62 -27.88 -0.13 -2.43 16 5 C 0.51 10.69 7.67 -10.99 -0.08 10.61 16 6 O -0.54 -13.39 15.56 5.55 0.09 -13.30 16 7 N -0.59 -12.29 2.44 -176.43 -0.43 -12.72 16 8 C 0.24 6.18 5.20 -5.20 -0.03 6.15 16 9 C -0.52 -14.29 9.13 -34.44 -0.31 -14.60 16 10 H 0.06 1.69 7.64 -52.49 -0.40 1.29 16 11 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 12 N -0.90 -26.29 13.29 55.43 0.74 -25.56 16 13 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 14 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 15 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 16 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 17 C 0.19 3.14 5.78 -5.19 -0.03 3.11 16 18 C -0.03 -0.52 6.85 -35.62 -0.24 -0.76 16 19 C -0.17 -3.03 10.39 -39.70 -0.41 -3.44 16 20 C -0.21 -3.40 10.91 -39.71 -0.43 -3.83 16 21 C -0.05 -0.78 12.09 29.41 0.36 -0.42 16 22 O -0.18 -2.96 9.56 5.68 0.05 -2.91 16 23 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.88 8.10 -51.93 -0.42 0.46 16 27 H 0.06 0.95 8.10 -51.93 -0.42 0.53 16 28 H 0.10 1.61 6.93 -51.93 -0.36 1.25 16 29 H 0.09 1.28 7.40 -51.93 -0.38 0.89 16 30 H 0.05 1.32 7.42 -51.93 -0.39 0.93 16 31 H 0.03 0.85 7.89 -51.93 -0.41 0.44 16 32 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 33 H 0.11 1.56 7.89 -51.93 -0.41 1.15 16 34 H 0.08 1.08 6.44 -51.93 -0.33 0.74 16 35 H 0.15 2.73 8.06 -52.49 -0.42 2.31 16 36 H 0.14 1.93 8.06 -52.48 -0.42 1.51 16 37 H 0.19 2.01 8.06 -52.48 -0.42 1.59 16 LS Contribution 321.48 15.07 4.84 4.84 Total: -1.00 -33.44 321.48 -5.41 -38.86 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -5.20 Total: 0.95 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: -0.11 Total: -1.09 kcal Atomic # 7 Polarization: -38.58 SS G_CDS: 0.31 Total: -38.27 kcal Atomic # 8 Polarization: -22.05 SS G_CDS: -0.24 Total: -22.28 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -33.44 -5.41 -38.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263897238.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.945 kcal (2) G-P(sol) polarization free energy of solvation -33.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds