Wall clock time and date at job start Mon Mar 30 2020 00:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 114.00111 * 2 1 4 4 C 1.52997 * 109.47083 * 179.97438 * 3 2 1 5 5 C 1.50702 * 109.47266 * 180.02562 * 4 3 2 6 6 O 1.21287 * 119.99578 * 0.02562 * 5 4 3 7 7 N 1.34773 * 120.00755 * 180.02562 * 5 4 3 8 8 C 1.46493 * 120.00646 * 179.97438 * 7 5 4 9 9 C 1.50695 * 109.47443 * 270.00265 * 8 7 5 10 10 H 1.08001 * 120.00056 * 359.97438 * 9 8 7 11 11 C 1.37877 * 120.00480 * 179.97438 * 9 8 7 12 12 N 1.31517 * 119.99528 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 120.00487 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.46897 * 89.99800 * 13 11 9 15 15 H 1.48496 * 109.47501 * 210.00050 * 13 11 9 16 16 H 1.48501 * 109.46824 * 330.00136 * 13 11 9 17 17 C 1.46505 * 119.99455 * 0.02562 * 7 5 4 18 18 C 1.50703 * 109.47064 * 90.00114 * 17 7 5 19 19 C 1.34515 * 125.79060 * 89.99944 * 18 17 7 20 20 C 1.41380 * 106.83832 * 179.97438 * 19 18 17 21 21 C 1.34506 * 106.84493 * 359.97438 * 20 19 18 22 22 O 1.34306 * 125.78568 * 269.69282 * 18 17 7 23 23 H 1.08994 * 109.47031 * 59.99975 * 1 2 3 24 24 H 1.09004 * 109.46870 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.46812 * 299.99722 * 1 2 3 26 26 H 1.09006 * 109.46794 * 60.00460 * 3 2 1 27 27 H 1.09002 * 109.46995 * 300.00400 * 3 2 1 28 28 H 1.09004 * 109.47424 * 60.00564 * 4 3 2 29 29 H 1.09002 * 109.47551 * 300.00083 * 4 3 2 30 30 H 1.09006 * 109.46911 * 30.00087 * 8 7 5 31 31 H 1.08996 * 109.47170 * 149.99599 * 8 7 5 32 32 H 0.97003 * 119.99687 * 180.02562 * 12 11 9 33 33 H 1.09002 * 109.47068 * 210.00083 * 17 7 5 34 34 H 1.09001 * 109.47372 * 330.00170 * 17 7 5 35 35 H 1.07996 * 126.58016 * 0.03378 * 19 18 17 36 36 H 1.08006 * 126.57610 * 179.97438 * 20 19 18 37 37 H 1.08005 * 125.79499 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1485 2.5613 0.0013 6 8 3.4356 3.5425 0.0017 7 7 5.4888 2.7023 0.0014 8 6 6.0847 4.0406 0.0014 9 6 6.2891 4.4995 -1.4193 10 1 6.0041 3.8583 -2.2402 11 6 6.8400 5.7381 -1.6712 12 7 7.1867 6.5192 -0.6715 13 14 7.0941 6.3068 -3.4323 14 1 5.8821 7.0262 -3.8998 15 1 8.2652 7.2176 -3.4944 16 1 7.3368 5.1283 -4.3028 17 6 6.3499 1.5170 0.0003 18 6 6.6452 1.1119 -1.4209 19 6 7.6821 1.5418 -2.1622 20 6 7.5729 0.9120 -3.4232 21 6 6.4763 0.1345 -3.3770 22 8 5.9209 0.2560 -2.1602 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.6887 1.8463 0.8901 27 1 1.6886 1.8464 -0.8900 28 1 3.8575 0.6436 -0.8892 29 1 3.8568 0.6438 0.8908 30 1 5.4194 4.7345 0.5153 31 1 7.0454 4.0105 0.5154 32 1 7.5739 7.3907 -0.8487 33 1 7.2835 1.7457 0.5144 34 1 5.8435 0.6995 0.5134 35 1 8.4510 2.2343 -1.8530 36 1 8.2418 1.0321 -4.2627 37 1 6.1070 -0.4853 -4.1807 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263897238.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:35 Heat of formation + Delta-G solvation = -87.007312 kcal Electronic energy + Delta-G solvation = -20815.939865 eV Core-core repulsion = 17559.630171 eV Total energy + Delta-G solvation = -3256.309694 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.34186 -40.81713 -38.72926 -36.93169 -34.84835 -33.77408 -32.82412 -31.41655 -29.41801 -27.49032 -26.67278 -25.49317 -23.59947 -22.53069 -21.59949 -20.02438 -18.78821 -18.46393 -18.05299 -17.24772 -17.18999 -16.84667 -16.46918 -16.24862 -15.98381 -15.54945 -15.19275 -14.54740 -14.18128 -14.08785 -13.75214 -13.64543 -13.48674 -13.32936 -12.96416 -12.82460 -12.71781 -12.50480 -12.37088 -12.22557 -12.09996 -11.73098 -10.74453 -10.68731 -10.66911 -10.61120 -9.69549 -9.24890 -8.20241 -6.30000 0.85419 1.34127 1.36193 1.45839 1.65820 1.83157 2.20997 2.24226 2.40354 2.95495 3.11265 3.70666 3.88291 3.99652 4.06816 4.16570 4.27119 4.41945 4.50285 4.53390 4.55711 4.60254 4.78400 4.83759 4.85183 5.01039 5.03555 5.16192 5.25189 5.33060 5.54881 5.71176 5.81086 6.09755 6.14120 6.31859 6.60975 6.77597 7.26145 7.42046 8.87535 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.015621 B = 0.006835 C = 0.005516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.064016 B = 4095.713454 C = 5075.278783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.405 6.405 3 C 0.085 3.915 4 C -0.127 4.127 5 C 0.506 3.494 6 O -0.589 6.589 7 N -0.596 5.596 8 C 0.259 3.741 9 C -0.519 4.519 10 H 0.047 0.953 11 C 0.013 3.987 12 N -0.927 5.927 13 Si 0.952 3.048 14 H -0.284 1.284 15 H -0.275 1.275 16 H -0.266 1.266 17 C 0.190 3.810 18 C -0.043 4.043 19 C -0.193 4.193 20 C -0.236 4.236 21 C -0.039 4.039 22 O -0.183 6.183 23 H 0.043 0.957 24 H 0.108 0.892 25 H 0.049 0.951 26 H 0.053 0.947 27 H 0.040 0.960 28 H 0.107 0.893 29 H 0.127 0.873 30 H 0.004 0.996 31 H 0.032 0.968 32 H 0.265 0.735 33 H 0.121 0.879 34 H 0.124 0.876 35 H 0.135 0.865 36 H 0.158 0.842 37 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.067 -16.883 -0.938 17.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.324 6.324 3 C 0.007 3.993 4 C -0.166 4.166 5 C 0.296 3.704 6 O -0.470 6.470 7 N -0.326 5.326 8 C 0.138 3.862 9 C -0.558 4.558 10 H 0.065 0.935 11 C -0.186 4.186 12 N -0.568 5.568 13 Si 0.778 3.222 14 H -0.211 1.211 15 H -0.200 1.200 16 H -0.190 1.190 17 C 0.068 3.932 18 C -0.094 4.094 19 C -0.213 4.213 20 C -0.255 4.255 21 C -0.106 4.106 22 O -0.080 6.080 23 H 0.062 0.938 24 H 0.127 0.873 25 H 0.067 0.933 26 H 0.072 0.928 27 H 0.059 0.941 28 H 0.125 0.875 29 H 0.145 0.855 30 H 0.022 0.978 31 H 0.050 0.950 32 H 0.074 0.926 33 H 0.139 0.861 34 H 0.142 0.858 35 H 0.153 0.847 36 H 0.176 0.824 37 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -4.487 -16.504 -0.761 17.120 hybrid contribution 0.356 1.423 -1.132 1.853 sum -4.131 -15.080 -1.892 15.750 Atomic orbital electron populations 1.22967 0.79234 1.04200 1.00710 1.87763 1.21681 1.27383 1.95610 1.21998 0.92256 0.84235 1.00766 1.21485 0.94973 0.93384 1.06808 1.21008 0.82348 0.91633 0.75426 1.90652 1.61458 1.42964 1.51943 1.48270 1.05396 1.08105 1.70842 1.18875 0.92475 0.78669 0.96190 1.21535 1.39967 1.01468 0.92785 0.93452 1.25652 0.95519 0.96554 1.00869 1.70028 1.43706 1.10591 1.32464 0.85639 0.77590 0.78388 0.80621 1.21051 1.20047 1.19029 1.20184 0.97654 0.87701 0.87699 1.22973 0.93442 0.96207 0.96769 1.21741 1.01571 1.02821 0.95186 1.22103 1.01818 1.02281 0.99258 1.24692 0.95281 1.03765 0.86877 1.83964 1.48258 1.52375 1.23391 0.93806 0.87338 0.93281 0.92831 0.94117 0.87481 0.85481 0.97834 0.94975 0.92610 0.86120 0.85833 0.84719 0.82402 0.74504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.47 11.01 113.37 1.25 1.72 16 2 O -0.40 -10.67 10.70 -148.98 -1.59 -12.27 16 3 C 0.08 2.54 5.23 71.98 0.38 2.91 16 4 C -0.13 -3.83 4.62 29.85 0.14 -3.69 16 5 C 0.51 21.05 7.67 87.66 0.67 21.72 16 6 O -0.59 -30.25 15.56 -3.05 -0.05 -30.29 16 7 N -0.60 -24.70 2.44 -830.50 -2.03 -26.72 16 8 C 0.26 13.51 5.20 85.63 0.45 13.95 16 9 C -0.52 -29.32 9.13 25.60 0.23 -29.09 16 10 H 0.05 2.74 7.64 -2.91 -0.02 2.72 16 11 C 0.01 0.73 5.46 84.65 0.46 1.19 16 12 N -0.93 -55.44 13.29 21.45 0.28 -55.16 16 13 Si 0.95 45.45 29.54 68.60 2.03 47.48 16 14 H -0.28 -13.67 7.11 99.48 0.71 -12.96 16 15 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 16 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 17 C 0.19 5.85 5.78 85.63 0.50 6.35 16 18 C -0.04 -1.43 6.85 24.83 0.17 -1.26 16 19 C -0.19 -6.79 10.39 22.19 0.23 -6.56 16 20 C -0.24 -7.05 10.91 22.19 0.24 -6.81 16 21 C -0.04 -1.01 12.09 66.97 0.81 -0.20 16 22 O -0.18 -5.59 9.56 -2.58 -0.02 -5.61 16 23 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 24 H 0.11 1.51 8.14 -2.38 -0.02 1.49 16 25 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.05 1.63 8.10 -2.38 -0.02 1.61 16 27 H 0.04 1.34 8.10 -2.39 -0.02 1.32 16 28 H 0.11 3.16 6.93 -2.38 -0.02 3.14 16 29 H 0.13 3.00 7.40 -2.39 -0.02 2.98 16 30 H 0.00 0.22 7.42 -2.38 -0.02 0.20 16 31 H 0.03 1.67 7.89 -2.39 -0.02 1.65 16 32 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 33 H 0.12 3.36 7.89 -2.39 -0.02 3.34 16 34 H 0.12 2.79 6.44 -2.39 -0.02 2.77 16 35 H 0.13 5.03 8.06 -2.91 -0.02 5.00 16 36 H 0.16 4.02 8.06 -2.91 -0.02 3.99 16 37 H 0.24 3.81 8.06 -2.91 -0.02 3.78 16 Total: -1.00 -74.09 321.48 5.20 -68.89 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: 1.06 Total: 13.45 kcal Atomic # 6 Polarization: -5.29 SS G_CDS: 5.52 Total: 0.23 kcal Atomic # 7 Polarization: -80.14 SS G_CDS: -1.74 Total: -81.88 kcal Atomic # 8 Polarization: -46.51 SS G_CDS: -1.67 Total: -48.18 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -74.09 5.20 -68.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263897238.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.117 kcal (2) G-P(sol) polarization free energy of solvation -74.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds