Wall clock time and date at job start Mon Mar 30 2020 00:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34903 * 116.99825 * 2 1 4 4 O 1.21613 * 120.00202 * 0.02562 * 3 2 1 5 5 C 1.46476 * 119.99548 * 180.02562 * 3 2 1 6 6 C 1.36638 * 125.99017 * 180.02562 * 5 3 2 7 7 C 1.40313 * 106.70060 * 179.97438 * 6 5 3 8 8 C 1.35167 * 107.12614 * 359.97438 * 7 6 5 9 9 C 1.50702 * 125.60965 * 179.97438 * 8 7 6 10 10 N 1.46898 * 109.46796 * 90.00248 * 9 8 7 11 11 C 1.46902 * 111.00283 * 66.04964 * 10 9 8 12 12 C 1.46906 * 110.99888 * 189.99926 * 10 9 8 13 13 H 1.09000 * 109.47043 * 55.00222 * 12 10 9 14 14 C 1.52996 * 109.47112 * 295.00248 * 12 10 9 15 15 C 1.50698 * 109.47175 * 174.99888 * 12 10 9 16 16 H 1.07999 * 120.00165 * 0.02562 * 15 12 10 17 17 C 1.37873 * 120.00194 * 180.02562 * 15 12 10 18 18 N 1.31512 * 119.99839 * 359.97438 * 17 15 12 19 19 Si 1.86799 * 120.00211 * 180.02562 * 17 15 12 20 20 H 1.48508 * 109.47130 * 89.99894 * 19 17 15 21 21 H 1.48495 * 109.47075 * 209.99589 * 19 17 15 22 22 H 1.48496 * 109.47207 * 330.00095 * 19 17 15 23 23 O 1.33918 * 108.78206 * 0.22750 * 8 7 6 24 24 H 1.08998 * 109.47184 * 59.99543 * 1 2 3 25 25 H 1.09001 * 109.47051 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47353 * 300.00131 * 1 2 3 27 27 H 1.08005 * 126.65356 * 359.97438 * 6 5 3 28 28 H 1.08001 * 126.43913 * 180.02562 * 7 6 5 29 29 H 1.08999 * 109.47012 * 330.00679 * 9 8 7 30 30 H 1.08996 * 109.47316 * 209.99950 * 9 8 7 31 31 H 1.09004 * 109.47457 * 183.95363 * 11 10 9 32 32 H 1.09001 * 109.46615 * 303.95014 * 11 10 9 33 33 H 1.08990 * 109.47358 * 63.94680 * 11 10 9 34 34 H 1.09006 * 109.46822 * 299.99597 * 14 12 10 35 35 H 1.08997 * 109.47474 * 59.99711 * 14 12 10 36 36 H 1.09002 * 109.46922 * 180.02562 * 14 12 10 37 37 H 0.97003 * 120.00488 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0644 1.2020 0.0000 4 8 1.4020 2.2220 0.0005 5 6 3.5271 1.2786 -0.0006 6 6 4.2712 2.4246 -0.0001 7 6 5.6180 2.0310 -0.0004 8 6 5.6376 0.6795 -0.0003 9 6 6.8755 -0.1801 -0.0011 10 7 7.2784 -0.4593 1.3837 11 6 6.2770 -1.2895 2.0662 12 6 8.6044 -1.0901 1.4291 13 1 9.3230 -0.4637 0.9007 14 6 8.5382 -2.4650 0.7612 15 6 9.0362 -1.2490 2.8641 16 1 8.3902 -0.9152 3.6626 17 6 10.2561 -1.8205 3.1577 18 7 11.0427 -2.2274 2.1854 19 14 10.7911 -2.0180 4.9365 20 1 10.3311 -3.3340 5.4485 21 1 12.2720 -1.9450 5.0190 22 1 10.1955 -0.9324 5.7561 23 8 4.3762 0.2299 -0.0051 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 3.8955 3.4373 0.0003 28 1 6.4774 2.6850 0.0003 29 1 7.6812 0.3438 -0.5153 30 1 6.6660 -1.1183 -0.5147 31 1 6.5651 -1.4228 3.1090 32 1 5.3047 -0.7992 2.0178 33 1 6.2180 -2.2624 1.5784 34 1 7.8196 -3.0914 1.2897 35 1 8.2259 -2.3501 -0.2768 36 1 9.5220 -2.9332 0.7953 37 1 11.9011 -2.6292 2.3919 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264179714.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:04 Heat of formation + Delta-G solvation = -56.828565 kcal Electronic energy + Delta-G solvation = -20218.508155 eV Core-core repulsion = 16963.507109 eV Total energy + Delta-G solvation = -3255.001046 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.65669 -40.27583 -37.34027 -36.66584 -33.21981 -32.87127 -30.98693 -28.87620 -28.02299 -26.66657 -25.23835 -24.20657 -22.59565 -21.41455 -20.40202 -19.36992 -18.42518 -17.16557 -16.86470 -16.32460 -15.99034 -15.38460 -14.91348 -14.33021 -14.11011 -13.87086 -13.41475 -13.23544 -13.09376 -12.90131 -12.59986 -12.40769 -12.10641 -11.66248 -11.17455 -11.12876 -11.03582 -10.99970 -10.85970 -10.72293 -10.56833 -10.11249 -10.02085 -9.92282 -8.99024 -8.52383 -8.45062 -7.34276 -6.07108 -4.11166 0.83614 2.24409 2.34806 2.87473 3.00915 3.28365 3.35358 3.39578 4.37222 4.60812 4.86940 4.92525 4.93991 4.95783 5.03263 5.25680 5.28311 5.59896 5.61685 5.74702 5.91768 5.97219 6.07737 6.13142 6.32006 6.41942 6.58815 6.73792 6.83406 6.96497 7.00922 7.33101 7.53432 7.62299 7.73871 7.97201 8.25456 8.45456 8.94004 9.54177 11.00031 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.033336 B = 0.003877 C = 0.003795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.724119 B = 7219.523252 C = 7375.734257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.349 6.349 3 C 0.557 3.443 4 O -0.497 6.497 5 C -0.091 4.091 6 C -0.094 4.094 7 C -0.218 4.218 8 C 0.071 3.929 9 C 0.119 3.881 10 N -0.528 5.528 11 C 0.031 3.969 12 C 0.211 3.789 13 H 0.044 0.956 14 C -0.176 4.176 15 C -0.502 4.502 16 H 0.064 0.936 17 C 0.060 3.940 18 N -0.894 5.894 19 Si 0.898 3.102 20 H -0.282 1.282 21 H -0.287 1.287 22 H -0.273 1.273 23 O -0.151 6.151 24 H 0.064 0.936 25 H 0.104 0.896 26 H 0.065 0.935 27 H 0.161 0.839 28 H 0.162 0.838 29 H 0.106 0.894 30 H 0.051 0.949 31 H 0.077 0.923 32 H 0.042 0.958 33 H 0.023 0.977 34 H 0.033 0.967 35 H 0.009 0.991 36 H 0.091 0.909 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.612 4.372 -5.970 16.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.265 6.265 3 C 0.403 3.597 4 O -0.387 6.387 5 C -0.141 4.141 6 C -0.114 4.114 7 C -0.238 4.238 8 C 0.017 3.983 9 C -0.009 4.009 10 N -0.253 5.253 11 C -0.117 4.117 12 C 0.106 3.894 13 H 0.062 0.938 14 C -0.235 4.235 15 C -0.540 4.540 16 H 0.082 0.918 17 C -0.142 4.142 18 N -0.533 5.533 19 Si 0.726 3.274 20 H -0.208 1.208 21 H -0.213 1.213 22 H -0.198 1.198 23 O -0.046 6.046 24 H 0.083 0.917 25 H 0.122 0.878 26 H 0.084 0.916 27 H 0.179 0.821 28 H 0.179 0.821 29 H 0.124 0.876 30 H 0.069 0.931 31 H 0.096 0.904 32 H 0.061 0.939 33 H 0.042 0.958 34 H 0.052 0.948 35 H 0.028 0.972 36 H 0.109 0.891 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -14.734 4.704 -5.741 16.498 hybrid contribution 0.118 -0.747 0.522 0.919 sum -14.616 3.958 -5.219 16.017 Atomic orbital electron populations 1.23330 0.75664 1.04015 1.02693 1.86695 1.23738 1.31953 1.84078 1.19223 0.85650 0.81932 0.72872 1.90917 1.64575 1.35915 1.47260 1.20485 0.87643 0.86560 1.19442 1.21958 0.92611 0.98431 0.98363 1.21599 0.97325 0.94482 1.10345 1.23318 0.83351 0.94529 0.97090 1.20775 0.89004 0.96814 0.94296 1.62490 1.04869 1.47887 1.10025 1.22298 0.93833 0.94826 1.00777 1.19373 0.83045 0.89763 0.97210 0.93845 1.22446 1.03740 1.01728 0.95574 1.21077 1.02497 1.39107 0.91326 0.91808 1.24912 0.96398 0.95448 0.97415 1.69873 1.10739 1.41517 1.31186 0.86500 0.77658 0.78457 0.84832 1.20789 1.21256 1.19797 1.84129 1.15708 1.34583 1.70157 0.91686 0.87772 0.91623 0.82144 0.82059 0.87612 0.93093 0.90401 0.93927 0.95804 0.94840 0.97239 0.89064 0.92906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.57 101.05 1.07 1.38 16 2 O -0.35 -4.57 10.58 -42.49 -0.45 -5.02 16 3 C 0.56 8.09 7.93 34.05 0.27 8.36 16 4 O -0.50 -7.65 16.66 -19.35 -0.32 -7.97 16 5 C -0.09 -1.39 7.18 -36.84 -0.26 -1.65 16 6 C -0.09 -1.29 10.62 -39.38 -0.42 -1.70 16 7 C -0.22 -3.09 10.77 -39.89 -0.43 -3.52 16 8 C 0.07 1.13 5.88 -35.40 -0.21 0.92 16 9 C 0.12 2.03 4.93 -4.98 -0.02 2.00 16 10 N -0.53 -10.82 4.73 -237.73 -1.13 -11.95 16 11 C 0.03 0.61 8.72 60.07 0.52 1.13 16 12 C 0.21 5.02 2.34 -68.86 -0.16 4.86 16 13 H 0.04 1.11 8.03 -51.93 -0.42 0.69 16 14 C -0.18 -4.02 8.28 37.16 0.31 -3.72 16 15 C -0.50 -13.20 7.94 -34.44 -0.27 -13.48 16 16 H 0.06 1.70 6.75 -52.49 -0.35 1.34 16 17 C 0.06 1.59 5.30 -17.82 -0.09 1.49 16 18 N -0.89 -24.58 11.32 55.43 0.63 -23.95 16 19 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 23 O -0.15 -2.47 9.95 4.74 0.05 -2.42 16 24 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.16 1.84 8.06 -52.48 -0.42 1.41 16 28 H 0.16 1.99 8.06 -52.49 -0.42 1.57 16 29 H 0.11 1.65 8.00 -51.93 -0.42 1.24 16 30 H 0.05 0.86 6.94 -51.93 -0.36 0.50 16 31 H 0.08 1.62 6.53 -51.93 -0.34 1.28 16 32 H 0.04 0.78 6.61 -51.93 -0.34 0.44 16 33 H 0.02 0.46 6.28 -51.93 -0.33 0.13 16 34 H 0.03 0.75 6.39 -51.93 -0.33 0.42 16 35 H 0.01 0.18 6.75 -51.93 -0.35 -0.17 16 36 H 0.09 2.33 6.07 -51.93 -0.32 2.01 16 37 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 311.76 15.07 4.70 4.70 Total: -1.00 -29.11 311.76 -6.05 -35.16 By element: Atomic # 1 Polarization: 4.36 SS G_CDS: -4.80 Total: -0.44 kcal Atomic # 6 Polarization: -4.21 SS G_CDS: 0.29 Total: -3.92 kcal Atomic # 7 Polarization: -35.40 SS G_CDS: -0.50 Total: -35.90 kcal Atomic # 8 Polarization: -14.70 SS G_CDS: -0.72 Total: -15.42 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -29.11 -6.05 -35.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264179714.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.665 kcal (2) G-P(sol) polarization free energy of solvation -29.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds