Wall clock time and date at job start Mon Mar 30 2020 00:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34903 * 116.99825 * 2 1 4 4 O 1.21613 * 120.00202 * 0.02562 * 3 2 1 5 5 C 1.46476 * 119.99548 * 180.02562 * 3 2 1 6 6 C 1.36638 * 125.99017 * 180.02562 * 5 3 2 7 7 C 1.40313 * 106.70060 * 179.97438 * 6 5 3 8 8 C 1.35167 * 107.12614 * 359.97438 * 7 6 5 9 9 C 1.50702 * 125.60965 * 179.97438 * 8 7 6 10 10 N 1.46898 * 109.46796 * 90.00248 * 9 8 7 11 11 C 1.46902 * 111.00283 * 66.04964 * 10 9 8 12 12 C 1.46906 * 110.99888 * 189.99926 * 10 9 8 13 13 H 1.09000 * 109.47043 * 55.00222 * 12 10 9 14 14 C 1.52996 * 109.47112 * 295.00248 * 12 10 9 15 15 C 1.50698 * 109.47175 * 174.99888 * 12 10 9 16 16 H 1.07999 * 120.00165 * 0.02562 * 15 12 10 17 17 C 1.37873 * 120.00194 * 180.02562 * 15 12 10 18 18 N 1.31512 * 119.99839 * 359.97438 * 17 15 12 19 19 Si 1.86799 * 120.00211 * 180.02562 * 17 15 12 20 20 H 1.48508 * 109.47130 * 89.99894 * 19 17 15 21 21 H 1.48495 * 109.47075 * 209.99589 * 19 17 15 22 22 H 1.48496 * 109.47207 * 330.00095 * 19 17 15 23 23 O 1.33918 * 108.78206 * 0.22750 * 8 7 6 24 24 H 1.08998 * 109.47184 * 59.99543 * 1 2 3 25 25 H 1.09001 * 109.47051 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47353 * 300.00131 * 1 2 3 27 27 H 1.08005 * 126.65356 * 359.97438 * 6 5 3 28 28 H 1.08001 * 126.43913 * 180.02562 * 7 6 5 29 29 H 1.08999 * 109.47012 * 330.00679 * 9 8 7 30 30 H 1.08996 * 109.47316 * 209.99950 * 9 8 7 31 31 H 1.09004 * 109.47457 * 183.95363 * 11 10 9 32 32 H 1.09001 * 109.46615 * 303.95014 * 11 10 9 33 33 H 1.08990 * 109.47358 * 63.94680 * 11 10 9 34 34 H 1.09006 * 109.46822 * 299.99597 * 14 12 10 35 35 H 1.08997 * 109.47474 * 59.99711 * 14 12 10 36 36 H 1.09002 * 109.46922 * 180.02562 * 14 12 10 37 37 H 0.97003 * 120.00488 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0644 1.2020 0.0000 4 8 1.4020 2.2220 0.0005 5 6 3.5271 1.2786 -0.0006 6 6 4.2712 2.4246 -0.0001 7 6 5.6180 2.0310 -0.0004 8 6 5.6376 0.6795 -0.0003 9 6 6.8755 -0.1801 -0.0011 10 7 7.2784 -0.4593 1.3837 11 6 6.2770 -1.2895 2.0662 12 6 8.6044 -1.0901 1.4291 13 1 9.3230 -0.4637 0.9007 14 6 8.5382 -2.4650 0.7612 15 6 9.0362 -1.2490 2.8641 16 1 8.3902 -0.9152 3.6626 17 6 10.2561 -1.8205 3.1577 18 7 11.0427 -2.2274 2.1854 19 14 10.7911 -2.0180 4.9365 20 1 10.3311 -3.3340 5.4485 21 1 12.2720 -1.9450 5.0190 22 1 10.1955 -0.9324 5.7561 23 8 4.3762 0.2299 -0.0051 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 3.8955 3.4373 0.0003 28 1 6.4774 2.6850 0.0003 29 1 7.6812 0.3438 -0.5153 30 1 6.6660 -1.1183 -0.5147 31 1 6.5651 -1.4228 3.1090 32 1 5.3047 -0.7992 2.0178 33 1 6.2180 -2.2624 1.5784 34 1 7.8196 -3.0914 1.2897 35 1 8.2259 -2.3501 -0.2768 36 1 9.5220 -2.9332 0.7953 37 1 11.9011 -2.6292 2.3919 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264179714.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:03 Heat of formation + Delta-G solvation = -74.526634 kcal Electronic energy + Delta-G solvation = -20219.275601 eV Core-core repulsion = 16963.507109 eV Total energy + Delta-G solvation = -3255.768492 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.81913 -41.32238 -38.99703 -37.70159 -34.93720 -34.18708 -32.38909 -30.42399 -29.19001 -27.89553 -27.16954 -25.70347 -23.77992 -22.64747 -21.61945 -21.00889 -19.51394 -18.30388 -18.13458 -17.98253 -17.28089 -16.78212 -16.47678 -15.90846 -15.51269 -15.16297 -14.75673 -14.40311 -14.31842 -14.17122 -13.98751 -13.56836 -13.45140 -13.11644 -12.91442 -12.81475 -12.64203 -12.49854 -12.28985 -12.07752 -12.00702 -11.92440 -11.81639 -11.09416 -10.91578 -10.47553 -9.73067 -8.97167 -8.09399 -6.19384 -0.30195 1.16244 1.24715 1.44447 1.46549 1.56174 1.77193 1.93404 2.45443 3.20728 3.37234 3.56565 3.82732 3.86777 4.23260 4.31023 4.32177 4.42767 4.49227 4.56183 4.66597 4.69937 4.73157 4.82480 4.89351 4.92733 5.06976 5.12534 5.15773 5.32550 5.52959 5.71073 5.79011 5.82768 6.14629 6.40670 6.47734 6.63200 6.92020 7.49472 8.96528 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.033336 B = 0.003877 C = 0.003795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.724119 B = 7219.523252 C = 7375.734257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.360 6.360 3 C 0.559 3.441 4 O -0.510 6.510 5 C -0.105 4.105 6 C -0.087 4.087 7 C -0.207 4.207 8 C 0.051 3.949 9 C 0.123 3.877 10 N -0.537 5.537 11 C 0.040 3.960 12 C 0.217 3.783 13 H 0.022 0.978 14 C -0.163 4.163 15 C -0.516 4.516 16 H 0.056 0.944 17 C 0.016 3.984 18 N -0.918 5.918 19 Si 0.955 3.045 20 H -0.278 1.278 21 H -0.284 1.284 22 H -0.271 1.271 23 O -0.165 6.165 24 H 0.072 0.928 25 H 0.133 0.867 26 H 0.069 0.931 27 H 0.184 0.816 28 H 0.181 0.819 29 H 0.118 0.882 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.055 0.945 33 H 0.023 0.977 34 H 0.030 0.970 35 H 0.032 0.968 36 H 0.064 0.936 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.655 4.947 -5.948 17.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.276 6.276 3 C 0.405 3.595 4 O -0.401 6.401 5 C -0.154 4.154 6 C -0.107 4.107 7 C -0.227 4.227 8 C -0.003 4.003 9 C -0.005 4.005 10 N -0.261 5.261 11 C -0.108 4.108 12 C 0.110 3.890 13 H 0.040 0.960 14 C -0.223 4.223 15 C -0.554 4.554 16 H 0.074 0.926 17 C -0.183 4.183 18 N -0.558 5.558 19 Si 0.781 3.219 20 H -0.204 1.204 21 H -0.210 1.210 22 H -0.196 1.196 23 O -0.061 6.061 24 H 0.091 0.909 25 H 0.151 0.849 26 H 0.088 0.912 27 H 0.202 0.798 28 H 0.198 0.802 29 H 0.136 0.864 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.042 0.958 34 H 0.049 0.951 35 H 0.051 0.949 36 H 0.083 0.917 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -15.797 5.275 -5.724 17.611 hybrid contribution 0.330 -0.905 0.470 1.071 sum -15.468 4.371 -5.254 16.910 Atomic orbital electron populations 1.23702 0.73288 1.06195 1.03292 1.86681 1.26142 1.31228 1.83597 1.19180 0.85497 0.82195 0.72583 1.90903 1.64787 1.36355 1.48090 1.20840 0.88112 0.86809 1.19668 1.22272 0.92167 0.99165 0.97075 1.21884 0.98235 0.93978 1.08557 1.23118 0.82982 0.94977 0.99176 1.20735 0.90117 0.97392 0.92212 1.62333 1.03754 1.47457 1.12541 1.22191 0.94060 0.94898 0.99698 1.19123 0.84363 0.89836 0.95667 0.95984 1.22257 1.02078 1.00977 0.96941 1.21350 1.02595 1.38926 0.92543 0.92601 1.25598 0.96563 0.95327 1.00845 1.69985 1.10959 1.42096 1.32742 0.85597 0.77186 0.78374 0.80706 1.20404 1.20999 1.19567 1.84090 1.15960 1.35319 1.70696 0.90944 0.84892 0.91203 0.79848 0.80186 0.86395 0.92939 0.92040 0.92675 0.95845 0.95081 0.94929 0.91714 0.92934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.57 113.37 1.20 1.63 16 2 O -0.36 -8.96 10.58 -56.80 -0.60 -9.57 16 3 C 0.56 15.51 7.93 69.97 0.55 16.06 16 4 O -0.51 -14.98 16.66 19.46 0.32 -14.65 16 5 C -0.10 -3.02 7.18 24.04 0.17 -2.85 16 6 C -0.09 -2.20 10.62 22.40 0.24 -1.96 16 7 C -0.21 -5.43 10.77 22.07 0.24 -5.19 16 8 C 0.05 1.54 5.88 24.98 0.15 1.68 16 9 C 0.12 4.04 4.93 85.56 0.42 4.46 16 10 N -0.54 -21.67 4.73 -906.05 -4.29 -25.96 16 11 C 0.04 1.55 8.72 127.69 1.11 2.66 16 12 C 0.22 10.30 2.34 44.17 0.10 10.40 16 13 H 0.02 1.15 8.03 -2.39 -0.02 1.13 16 14 C -0.16 -7.46 8.28 71.98 0.60 -6.86 16 15 C -0.52 -27.27 7.94 25.60 0.20 -27.07 16 16 H 0.06 2.98 6.75 -2.91 -0.02 2.96 16 17 C 0.02 0.83 5.30 84.65 0.45 1.28 16 18 N -0.92 -50.83 11.32 21.45 0.24 -50.58 16 19 Si 0.96 42.69 29.54 68.60 2.03 44.72 16 20 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 21 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 22 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 23 O -0.16 -5.20 9.95 -4.89 -0.05 -5.25 16 24 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.13 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.18 3.68 8.06 -2.91 -0.02 3.65 16 28 H 0.18 3.95 8.06 -2.91 -0.02 3.93 16 29 H 0.12 3.54 8.00 -2.39 -0.02 3.52 16 30 H 0.05 1.71 6.94 -2.39 -0.02 1.69 16 31 H 0.06 2.56 6.53 -2.38 -0.02 2.54 16 32 H 0.05 1.98 6.61 -2.39 -0.02 1.96 16 33 H 0.02 0.89 6.28 -2.39 -0.02 0.88 16 34 H 0.03 1.39 6.39 -2.38 -0.02 1.37 16 35 H 0.03 1.29 6.75 -2.39 -0.02 1.27 16 36 H 0.06 3.32 6.07 -2.39 -0.01 3.31 16 37 H 0.26 13.85 8.31 -92.71 -0.77 13.08 16 Total: -1.00 -61.22 311.76 4.17 -57.05 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: 1.08 Total: 10.00 kcal Atomic # 6 Polarization: -11.20 SS G_CDS: 5.43 Total: -5.76 kcal Atomic # 7 Polarization: -72.49 SS G_CDS: -4.05 Total: -76.54 kcal Atomic # 8 Polarization: -29.15 SS G_CDS: -0.33 Total: -29.47 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Total: -61.22 4.17 -57.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264179714.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.476 kcal (2) G-P(sol) polarization free energy of solvation -61.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds