Wall clock time and date at job start Mon Mar 30 2020 00:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34773 * 116.99530 * 2 1 4 4 O 1.21538 * 120.00401 * 359.72924 * 3 2 1 5 5 C 1.47236 * 119.99972 * 180.02562 * 3 2 1 6 6 C 1.47061 * 127.19792 * 359.40919 * 5 3 2 7 7 C 1.34154 * 105.94549 * 179.83033 * 6 5 3 8 8 O 1.34216 * 109.14520 * 0.44085 * 7 6 5 9 9 C 1.33619 * 110.92527 * 359.70551 * 8 7 6 10 10 C 1.50707 * 125.81030 * 180.02562 * 9 8 7 11 11 N 1.46899 * 109.46992 * 269.97453 * 10 9 8 12 12 C 1.46898 * 111.00058 * 66.04405 * 11 10 9 13 13 C 1.46895 * 111.00079 * 189.99794 * 11 10 9 14 14 H 1.09007 * 109.47060 * 54.99974 * 13 11 10 15 15 C 1.53001 * 109.47327 * 295.00070 * 13 11 10 16 16 C 1.50706 * 109.47249 * 175.00128 * 13 11 10 17 17 H 1.07989 * 119.99897 * 359.97438 * 16 13 11 18 18 C 1.37875 * 119.99855 * 180.02562 * 16 13 11 19 19 N 1.31518 * 120.00365 * 359.97438 * 18 16 13 20 20 Si 1.86796 * 119.99819 * 179.97438 * 18 16 13 21 21 H 1.48505 * 109.47238 * 90.00145 * 20 18 16 22 22 H 1.48498 * 109.47141 * 209.99928 * 20 18 16 23 23 H 1.48498 * 109.47369 * 329.99696 * 20 18 16 24 24 H 1.08996 * 109.47280 * 299.99444 * 1 2 3 25 25 H 1.09001 * 109.47466 * 59.99898 * 1 2 3 26 26 H 1.09002 * 109.46830 * 179.97438 * 1 2 3 27 27 H 1.08001 * 127.02585 * 0.02562 * 6 5 3 28 28 H 1.08003 * 125.42988 * 180.10920 * 7 6 5 29 29 H 1.08999 * 109.46843 * 29.97495 * 10 9 8 30 30 H 1.08997 * 109.47370 * 149.97623 * 10 9 8 31 31 H 1.08997 * 109.47147 * 59.99881 * 12 11 10 32 32 H 1.08997 * 109.47442 * 180.02562 * 12 11 10 33 33 H 1.09002 * 109.47348 * 300.00176 * 12 11 10 34 34 H 1.08999 * 109.46816 * 59.99646 * 15 13 11 35 35 H 1.08998 * 109.47261 * 179.97438 * 15 13 11 36 36 H 1.08998 * 109.46812 * 299.99748 * 15 13 11 37 37 H 0.96999 * 120.00358 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2009 0.0000 4 8 1.4018 2.2202 -0.0050 5 6 3.5341 1.2781 -0.0006 6 6 4.4834 0.1549 0.0109 7 6 5.7065 0.7060 0.0017 8 8 5.5869 2.0428 -0.0043 9 6 4.3013 2.4069 -0.0058 10 6 3.7860 3.8231 -0.0127 11 7 3.6184 4.2899 1.3701 12 6 4.9155 4.3933 2.0517 13 6 2.8992 5.5702 1.4100 14 1 1.9506 5.4707 0.8823 15 6 3.7462 6.6521 0.7370 16 6 2.6386 5.9555 2.8435 17 1 2.9734 5.3134 3.6446 18 6 1.9719 7.1274 3.1320 19 7 1.5638 7.9092 2.1563 20 14 1.6483 7.6046 4.9087 21 1 2.7831 8.4161 5.4179 22 1 0.3966 8.3998 4.9876 23 1 1.5080 6.3776 5.7332 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 4.2446 -0.8983 0.0211 28 1 6.6388 0.1609 0.0046 29 1 4.4982 4.4664 -0.5295 30 1 2.8255 3.8578 -0.5268 31 1 5.5507 5.1007 1.5186 32 1 4.7624 4.7404 3.0735 33 1 5.3960 3.4150 2.0689 34 1 3.9346 6.3734 -0.2998 35 1 3.2123 7.6020 0.7662 36 1 4.6947 6.7516 1.2647 37 1 1.0951 8.7338 2.3593 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267953424.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:07 Heat of formation + Delta-G solvation = -55.883007 kcal Electronic energy + Delta-G solvation = -20876.790691 eV Core-core repulsion = 17621.830648 eV Total energy + Delta-G solvation = -3254.960043 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.48213 -39.80047 -37.25832 -36.08033 -33.03336 -32.73985 -30.65668 -28.49032 -27.86185 -26.48925 -25.13600 -24.07696 -22.91783 -21.31212 -19.75002 -19.21186 -17.80423 -16.64729 -16.42656 -16.17202 -15.82871 -15.53442 -14.94846 -14.38691 -14.13372 -13.78175 -13.34319 -13.01896 -12.97285 -12.74649 -12.42020 -12.15422 -11.81102 -11.54371 -11.10384 -11.06516 -10.80087 -10.66084 -10.58079 -10.52709 -10.14116 -10.00752 -9.90040 -9.72308 -8.89382 -8.52086 -8.36030 -7.21033 -5.98039 -4.01383 1.42163 2.08651 2.74641 3.12816 3.33095 3.34545 3.39636 3.44404 4.44131 4.61349 4.94733 5.03180 5.14448 5.21637 5.31125 5.34252 5.43615 5.59483 5.70228 5.87876 5.96442 6.14183 6.22829 6.33358 6.39840 6.60467 6.68015 6.81758 6.89589 7.10342 7.16442 7.46180 7.70911 7.83395 8.09509 8.12911 8.36838 8.56760 9.03239 9.62810 11.09318 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.019769 B = 0.005823 C = 0.005005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.025891 B = 4807.337517 C = 5592.652650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.361 6.361 3 C 0.535 3.465 4 O -0.484 6.484 5 C -0.228 4.228 6 C -0.172 4.172 7 C -0.051 4.051 8 O -0.172 6.172 9 C 0.120 3.880 10 C 0.117 3.883 11 N -0.522 5.522 12 C 0.030 3.970 13 C 0.214 3.786 14 H 0.046 0.954 15 C -0.174 4.174 16 C -0.498 4.498 17 H 0.063 0.937 18 C 0.058 3.942 19 N -0.894 5.894 20 Si 0.897 3.103 21 H -0.282 1.282 22 H -0.287 1.287 23 H -0.274 1.274 24 H 0.065 0.935 25 H 0.061 0.939 26 H 0.097 0.903 27 H 0.159 0.841 28 H 0.206 0.794 29 H 0.049 0.951 30 H 0.116 0.884 31 H 0.020 0.980 32 H 0.079 0.921 33 H 0.040 0.960 34 H 0.008 0.992 35 H 0.090 0.910 36 H 0.031 0.969 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.918 -14.850 -5.924 16.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.278 6.278 3 C 0.379 3.621 4 O -0.371 6.371 5 C -0.231 4.231 6 C -0.191 4.191 7 C -0.117 4.117 8 O -0.067 6.067 9 C 0.067 3.933 10 C -0.011 4.011 11 N -0.246 5.246 12 C -0.119 4.119 13 C 0.108 3.892 14 H 0.064 0.936 15 C -0.234 4.234 16 C -0.536 4.536 17 H 0.081 0.919 18 C -0.142 4.142 19 N -0.533 5.533 20 Si 0.725 3.275 21 H -0.208 1.208 22 H -0.213 1.213 23 H -0.199 1.199 24 H 0.083 0.917 25 H 0.080 0.920 26 H 0.115 0.885 27 H 0.176 0.824 28 H 0.222 0.778 29 H 0.067 0.933 30 H 0.134 0.866 31 H 0.039 0.961 32 H 0.097 0.903 33 H 0.059 0.941 34 H 0.027 0.973 35 H 0.109 0.891 36 H 0.050 0.950 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.525 -14.525 -5.694 16.245 hybrid contribution 0.073 0.626 0.537 0.828 sum 4.599 -13.900 -5.158 15.523 Atomic orbital electron populations 1.23214 0.76385 1.03143 1.02829 1.86520 1.23157 1.32993 1.85138 1.19915 0.87493 0.81411 0.73277 1.90938 1.66055 1.35368 1.44777 1.20057 0.90734 0.93455 1.18871 1.22829 0.91215 0.99493 1.05570 1.23815 1.00022 0.80041 1.07796 1.83841 1.27553 1.24457 1.70893 1.23199 0.79701 0.96931 0.93504 1.20939 1.00907 0.84652 0.94584 1.62404 1.18675 1.33407 1.10098 1.22326 0.90285 0.98429 1.00822 1.19351 0.92071 0.80648 0.97094 0.93580 1.22443 1.00193 1.05165 0.95552 1.21075 1.36098 1.05110 0.91361 0.91924 1.24910 0.95652 0.96392 0.97293 1.69885 1.39387 1.13065 1.30985 0.86511 0.77557 0.78440 0.84978 1.20832 1.21284 1.19889 0.91656 0.92010 0.88475 0.82387 0.77757 0.93348 0.86601 0.96116 0.90270 0.94125 0.97331 0.89106 0.94972 0.93002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.44 10.57 101.05 1.07 1.51 16 2 O -0.36 -5.38 10.48 -40.69 -0.43 -5.81 16 3 C 0.53 9.51 7.95 34.39 0.27 9.78 16 4 O -0.48 -10.08 14.64 -19.30 -0.28 -10.36 16 5 C -0.23 -3.81 6.32 -103.30 -0.65 -4.46 16 6 C -0.17 -2.21 11.05 -37.44 -0.41 -2.62 16 7 C -0.05 -0.59 12.03 29.29 0.35 -0.24 16 8 O -0.17 -2.60 9.91 7.73 0.08 -2.53 16 9 C 0.12 2.09 5.95 -34.93 -0.21 1.89 16 10 C 0.12 2.29 4.41 -4.97 -0.02 2.27 16 11 N -0.52 -11.73 4.73 -237.73 -1.13 -12.86 16 12 C 0.03 0.61 8.60 60.06 0.52 1.13 16 13 C 0.21 5.51 2.34 -68.86 -0.16 5.34 16 14 H 0.05 1.33 8.03 -51.93 -0.42 0.91 16 15 C -0.17 -4.23 8.28 37.16 0.31 -3.93 16 16 C -0.50 -13.86 7.88 -34.44 -0.27 -14.13 16 17 H 0.06 1.75 6.77 -52.49 -0.36 1.40 16 18 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 19 N -0.89 -25.73 11.32 55.43 0.63 -25.10 16 20 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 23 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 24 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.16 1.61 8.06 -52.49 -0.42 1.19 16 28 H 0.21 1.40 8.06 -52.48 -0.42 0.98 16 29 H 0.05 0.90 6.94 -51.93 -0.36 0.54 16 30 H 0.12 2.39 6.35 -51.93 -0.33 2.06 16 31 H 0.02 0.41 6.51 -51.93 -0.34 0.07 16 32 H 0.08 1.71 6.42 -51.93 -0.33 1.38 16 33 H 0.04 0.75 6.81 -51.93 -0.35 0.40 16 34 H 0.01 0.17 6.75 -51.93 -0.35 -0.18 16 35 H 0.09 2.43 6.07 -51.93 -0.32 2.12 16 36 H 0.03 0.75 6.47 -51.93 -0.34 0.41 16 37 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 308.56 15.07 4.65 4.65 Total: -1.00 -31.65 308.56 -5.54 -37.19 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: -4.74 Total: 0.10 kcal Atomic # 6 Polarization: -2.62 SS G_CDS: 0.69 Total: -1.93 kcal Atomic # 7 Polarization: -37.46 SS G_CDS: -0.50 Total: -37.95 kcal Atomic # 8 Polarization: -18.06 SS G_CDS: -0.63 Total: -18.70 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -31.65 -5.54 -37.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267953424.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.693 kcal (2) G-P(sol) polarization free energy of solvation -31.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds