Wall clock time and date at job start Mon Mar 30 2020 00:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34773 * 116.99530 * 2 1 4 4 O 1.21538 * 120.00401 * 359.72924 * 3 2 1 5 5 C 1.47236 * 119.99972 * 180.02562 * 3 2 1 6 6 C 1.47061 * 127.19792 * 359.40919 * 5 3 2 7 7 C 1.34154 * 105.94549 * 179.83033 * 6 5 3 8 8 O 1.34216 * 109.14520 * 0.44085 * 7 6 5 9 9 C 1.33619 * 110.92527 * 359.70551 * 8 7 6 10 10 C 1.50707 * 125.81030 * 180.02562 * 9 8 7 11 11 N 1.46899 * 109.46992 * 269.97453 * 10 9 8 12 12 C 1.46898 * 111.00058 * 66.04405 * 11 10 9 13 13 C 1.46895 * 111.00079 * 189.99794 * 11 10 9 14 14 H 1.09007 * 109.47060 * 54.99974 * 13 11 10 15 15 C 1.53001 * 109.47327 * 295.00070 * 13 11 10 16 16 C 1.50706 * 109.47249 * 175.00128 * 13 11 10 17 17 H 1.07989 * 119.99897 * 359.97438 * 16 13 11 18 18 C 1.37875 * 119.99855 * 180.02562 * 16 13 11 19 19 N 1.31518 * 120.00365 * 359.97438 * 18 16 13 20 20 Si 1.86796 * 119.99819 * 179.97438 * 18 16 13 21 21 H 1.48505 * 109.47238 * 90.00145 * 20 18 16 22 22 H 1.48498 * 109.47141 * 209.99928 * 20 18 16 23 23 H 1.48498 * 109.47369 * 329.99696 * 20 18 16 24 24 H 1.08996 * 109.47280 * 299.99444 * 1 2 3 25 25 H 1.09001 * 109.47466 * 59.99898 * 1 2 3 26 26 H 1.09002 * 109.46830 * 179.97438 * 1 2 3 27 27 H 1.08001 * 127.02585 * 0.02562 * 6 5 3 28 28 H 1.08003 * 125.42988 * 180.10920 * 7 6 5 29 29 H 1.08999 * 109.46843 * 29.97495 * 10 9 8 30 30 H 1.08997 * 109.47370 * 149.97623 * 10 9 8 31 31 H 1.08997 * 109.47147 * 59.99881 * 12 11 10 32 32 H 1.08997 * 109.47442 * 180.02562 * 12 11 10 33 33 H 1.09002 * 109.47348 * 300.00176 * 12 11 10 34 34 H 1.08999 * 109.46816 * 59.99646 * 15 13 11 35 35 H 1.08998 * 109.47261 * 179.97438 * 15 13 11 36 36 H 1.08998 * 109.46812 * 299.99748 * 15 13 11 37 37 H 0.96999 * 120.00358 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2009 0.0000 4 8 1.4018 2.2202 -0.0050 5 6 3.5341 1.2781 -0.0006 6 6 4.4834 0.1549 0.0109 7 6 5.7065 0.7060 0.0017 8 8 5.5869 2.0428 -0.0043 9 6 4.3013 2.4069 -0.0058 10 6 3.7860 3.8231 -0.0127 11 7 3.6184 4.2899 1.3701 12 6 4.9155 4.3933 2.0517 13 6 2.8992 5.5702 1.4100 14 1 1.9506 5.4707 0.8823 15 6 3.7462 6.6521 0.7370 16 6 2.6386 5.9555 2.8435 17 1 2.9734 5.3134 3.6446 18 6 1.9719 7.1274 3.1320 19 7 1.5638 7.9092 2.1563 20 14 1.6483 7.6046 4.9087 21 1 2.7831 8.4161 5.4179 22 1 0.3966 8.3998 4.9876 23 1 1.5080 6.3776 5.7332 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 4.2446 -0.8983 0.0211 28 1 6.6388 0.1609 0.0046 29 1 4.4982 4.4664 -0.5295 30 1 2.8255 3.8578 -0.5268 31 1 5.5507 5.1007 1.5186 32 1 4.7624 4.7404 3.0735 33 1 5.3960 3.4150 2.0689 34 1 3.9346 6.3734 -0.2998 35 1 3.2123 7.6020 0.7662 36 1 4.6947 6.7516 1.2647 37 1 1.0951 8.7338 2.3593 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267953424.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:07 Heat of formation + Delta-G solvation = -77.139501 kcal Electronic energy + Delta-G solvation = -20877.712442 eV Core-core repulsion = 17621.830648 eV Total energy + Delta-G solvation = -3255.881794 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.62284 -41.10660 -39.03322 -37.41754 -34.93230 -34.01404 -32.16070 -30.21784 -29.04334 -27.94965 -27.17742 -25.61705 -24.32662 -22.44685 -21.41559 -20.65940 -19.00821 -18.27125 -17.86601 -17.70979 -17.16144 -16.85014 -16.64587 -15.94123 -15.58888 -15.54207 -14.79164 -14.44250 -14.25178 -14.18118 -13.77868 -13.57020 -13.41459 -12.95870 -12.93213 -12.78694 -12.65626 -12.53140 -12.31415 -12.04321 -11.85072 -11.77376 -11.55837 -10.97567 -10.85062 -10.50534 -9.68574 -8.96071 -8.11419 -6.22523 0.09499 1.09730 1.41388 1.42723 1.53326 1.57300 1.99967 2.05483 2.42913 3.17679 3.40252 3.54538 3.74776 3.94545 4.20424 4.33308 4.34962 4.42858 4.53674 4.59606 4.65169 4.69998 4.75339 4.83147 4.86385 4.92812 5.09132 5.12951 5.34207 5.42474 5.50876 5.67912 5.73991 6.01545 6.15557 6.41766 6.61107 6.78276 6.88727 7.45855 8.95190 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.019769 B = 0.005823 C = 0.005005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.025891 B = 4807.337517 C = 5592.652650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.355 6.355 3 C 0.531 3.469 4 O -0.528 6.528 5 C -0.241 4.241 6 C -0.178 4.178 7 C -0.026 4.026 8 O -0.176 6.176 9 C 0.094 3.906 10 C 0.124 3.876 11 N -0.536 5.536 12 C 0.039 3.961 13 C 0.220 3.780 14 H 0.003 0.997 15 C -0.159 4.159 16 C -0.515 4.515 17 H 0.056 0.944 18 C 0.011 3.989 19 N -0.920 5.920 20 Si 0.962 3.038 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.272 1.272 24 H 0.052 0.948 25 H 0.061 0.939 26 H 0.141 0.859 27 H 0.187 0.813 28 H 0.260 0.740 29 H 0.056 0.944 30 H 0.094 0.906 31 H 0.026 0.974 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.027 0.973 35 H 0.064 0.936 36 H 0.037 0.963 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.614 -17.002 -5.482 19.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.272 6.272 3 C 0.377 3.623 4 O -0.418 6.418 5 C -0.244 4.244 6 C -0.197 4.197 7 C -0.090 4.090 8 O -0.072 6.072 9 C 0.040 3.960 10 C -0.003 4.003 11 N -0.260 5.260 12 C -0.109 4.109 13 C 0.114 3.886 14 H 0.021 0.979 15 C -0.218 4.218 16 C -0.554 4.554 17 H 0.075 0.925 18 C -0.187 4.187 19 N -0.560 5.560 20 Si 0.787 3.213 21 H -0.197 1.197 22 H -0.209 1.209 23 H -0.197 1.197 24 H 0.071 0.929 25 H 0.079 0.921 26 H 0.159 0.841 27 H 0.204 0.796 28 H 0.275 0.725 29 H 0.074 0.926 30 H 0.112 0.888 31 H 0.044 0.956 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.046 0.954 35 H 0.083 0.917 36 H 0.056 0.944 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.236 -16.712 -5.260 18.597 hybrid contribution -0.459 1.135 0.335 1.269 sum 5.777 -15.577 -4.925 17.328 Atomic orbital electron populations 1.23546 0.74596 1.05810 1.02265 1.86511 1.24894 1.31347 1.84401 1.20304 0.88215 0.81536 0.72233 1.90923 1.67133 1.36876 1.46915 1.20360 0.90637 0.95094 1.18348 1.23140 0.90470 0.99891 1.06172 1.24887 1.01663 0.78385 1.04101 1.83828 1.26041 1.26529 1.70770 1.22593 0.80998 0.95844 0.96563 1.20655 1.00332 0.86693 0.92668 1.62217 1.19835 1.31562 1.12424 1.22247 0.89371 0.99715 0.99597 1.19039 0.91097 0.82717 0.95753 0.97893 1.22220 0.99647 1.03267 0.96702 1.21327 1.36487 1.05327 0.92219 0.92533 1.25702 0.95349 0.96331 1.01354 1.70018 1.39754 1.13343 1.32894 0.85503 0.77659 0.78081 0.80049 1.19700 1.20930 1.19705 0.92866 0.92053 0.84114 0.79580 0.72462 0.92619 0.88760 0.95561 0.91885 0.91965 0.95422 0.91721 0.94358 0.92901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 10.57 113.37 1.20 1.89 16 2 O -0.35 -10.28 10.48 -56.84 -0.60 -10.87 16 3 C 0.53 19.08 7.95 70.19 0.56 19.63 16 4 O -0.53 -23.07 14.64 19.71 0.29 -22.78 16 5 C -0.24 -7.84 6.32 -19.00 -0.12 -7.96 16 6 C -0.18 -3.97 11.05 23.65 0.26 -3.71 16 7 C -0.03 -0.48 12.03 66.89 0.80 0.32 16 8 O -0.18 -4.85 9.91 4.76 0.05 -4.81 16 9 C 0.09 3.19 5.95 25.28 0.15 3.34 16 10 C 0.12 4.97 4.41 85.56 0.38 5.35 16 11 N -0.54 -24.67 4.73 -906.04 -4.29 -28.95 16 12 C 0.04 1.57 8.60 127.69 1.10 2.67 16 13 C 0.22 11.80 2.34 44.17 0.10 11.90 16 14 H 0.00 0.19 8.03 -2.38 -0.02 0.17 16 15 C -0.16 -7.90 8.28 71.98 0.60 -7.31 16 16 C -0.52 -29.42 7.88 25.60 0.20 -29.22 16 17 H 0.06 3.23 6.77 -2.92 -0.02 3.21 16 18 C 0.01 0.63 5.30 84.65 0.45 1.08 16 19 N -0.92 -54.30 11.32 21.45 0.24 -54.05 16 20 Si 0.96 44.87 29.54 68.60 2.03 46.89 16 21 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 22 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 23 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 24 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 25 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.14 1.88 8.14 -2.39 -0.02 1.86 16 27 H 0.19 2.99 8.06 -2.91 -0.02 2.97 16 28 H 0.26 1.84 8.06 -2.91 -0.02 1.81 16 29 H 0.06 2.09 6.94 -2.39 -0.02 2.07 16 30 H 0.09 4.15 6.35 -2.39 -0.02 4.13 16 31 H 0.03 1.01 6.51 -2.39 -0.02 1.00 16 32 H 0.06 2.73 6.42 -2.39 -0.02 2.71 16 33 H 0.06 2.22 6.81 -2.39 -0.02 2.20 16 34 H 0.03 1.21 6.75 -2.39 -0.02 1.20 16 35 H 0.06 3.56 6.07 -2.39 -0.01 3.55 16 36 H 0.04 1.80 6.47 -2.39 -0.02 1.79 16 37 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 Total: -1.00 -71.40 308.56 4.48 -66.92 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: 1.08 Total: 9.65 kcal Atomic # 6 Polarization: -7.68 SS G_CDS: 5.68 Total: -2.00 kcal Atomic # 7 Polarization: -78.96 SS G_CDS: -4.05 Total: -83.01 kcal Atomic # 8 Polarization: -38.20 SS G_CDS: -0.26 Total: -38.46 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.89 kcal Total: -71.40 4.48 -66.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267953424.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.216 kcal (2) G-P(sol) polarization free energy of solvation -71.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds