Wall clock time and date at job start Mon Mar 30 2020 00:32:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.36085 * 116.99989 * 2 1 4 4 C 1.35104 * 120.55910 * 0.02562 * 3 2 1 5 5 O 1.34031 * 120.85885 * 179.72559 * 4 3 2 6 6 C 1.33772 * 122.05521 * 0.53425 * 5 4 3 7 7 C 1.50699 * 119.48237 * 179.74878 * 6 5 4 8 8 N 1.46904 * 109.47221 * 269.72436 * 7 6 5 9 9 C 1.46896 * 110.99663 * 293.95397 * 8 7 6 10 10 C 1.46894 * 110.99915 * 170.00202 * 8 7 6 11 11 H 1.09002 * 109.47104 * 309.99793 * 10 8 7 12 12 C 1.52997 * 109.47515 * 70.00061 * 10 8 7 13 13 C 1.50708 * 109.46991 * 190.00244 * 10 8 7 14 14 H 1.08000 * 119.99723 * 359.97438 * 13 10 8 15 15 C 1.37873 * 119.99930 * 179.97438 * 13 10 8 16 16 N 1.31509 * 120.00195 * 0.02562 * 15 13 10 17 17 Si 1.86803 * 119.99968 * 179.97438 * 15 13 10 18 18 H 1.48498 * 109.46680 * 60.00159 * 17 15 13 19 19 H 1.48492 * 109.47298 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.46944 * 300.00675 * 17 15 13 21 21 C 1.34848 * 121.03193 * 359.46938 * 6 5 4 22 22 C 1.41718 * 119.01899 * 0.25656 * 21 6 5 23 23 O 1.22171 * 120.92400 * 180.02562 * 22 21 6 24 24 H 1.09000 * 109.46700 * 300.00022 * 1 2 3 25 25 H 1.08993 * 109.46743 * 60.00234 * 1 2 3 26 26 H 1.08998 * 109.47083 * 180.02562 * 1 2 3 27 27 H 1.08004 * 119.57468 * 359.96740 * 4 3 2 28 28 H 1.08999 * 109.47292 * 149.72478 * 7 6 5 29 29 H 1.08998 * 109.46979 * 29.72413 * 7 6 5 30 30 H 1.08998 * 109.47503 * 296.04235 * 9 8 7 31 31 H 1.09007 * 109.47634 * 56.04710 * 9 8 7 32 32 H 1.09003 * 109.46925 * 176.04443 * 9 8 7 33 33 H 1.09002 * 109.47153 * 59.99762 * 12 10 8 34 34 H 1.09001 * 109.46832 * 299.99953 * 12 10 8 35 35 H 1.09004 * 109.47261 * 179.97438 * 12 10 8 36 36 H 0.97006 * 120.00358 * 179.97438 * 16 15 13 37 37 H 1.08001 * 120.48673 * 180.23976 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0469 1.2125 0.0000 4 6 1.3221 2.3527 0.0005 5 8 1.9244 3.5501 0.0060 6 6 3.2562 3.6750 0.0007 7 6 3.8722 5.0504 0.0016 8 7 4.0725 5.4982 -1.3831 9 6 5.0736 4.6674 -2.0654 10 6 4.4474 6.9177 -1.4283 11 1 3.7481 7.4976 -0.8258 12 6 5.8628 7.0894 -0.8733 13 6 4.4046 7.4035 -2.8543 14 1 4.1271 6.7253 -3.6476 15 6 4.7197 8.7137 -3.1460 16 7 5.0581 9.5393 -2.1800 17 14 4.6673 9.3156 -4.9136 18 1 3.2939 9.1482 -5.4529 19 1 5.0461 10.7506 -4.9593 20 1 5.6207 8.5259 -5.7339 21 6 4.0562 2.5895 0.0001 22 6 3.4665 1.3008 -0.0003 23 8 4.1582 0.2938 -0.0004 24 1 -0.3633 0.5139 0.8900 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 0.2434 2.2987 0.0004 28 1 4.8329 5.0179 0.5155 29 1 3.2084 5.7454 0.5158 30 1 6.0405 4.7892 -1.5774 31 1 4.7715 3.6211 -2.0171 32 1 5.1515 4.9752 -3.1081 33 1 6.5621 6.5096 -1.4757 34 1 5.8937 6.7381 0.1581 35 1 6.1411 8.1428 -0.9072 36 1 5.2802 10.4611 -2.3853 37 1 5.1305 2.7005 -0.0004 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268503298.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:16 Heat of formation + Delta-G solvation = -50.393099 kcal Electronic energy + Delta-G solvation = -20486.857357 eV Core-core repulsion = 17232.135374 eV Total energy + Delta-G solvation = -3254.721983 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.99163 -39.24755 -38.00358 -37.49166 -33.51773 -32.20226 -31.44616 -28.72996 -28.04721 -27.31029 -25.34056 -24.36259 -23.88139 -22.06806 -19.49991 -18.84494 -18.49921 -16.83788 -16.69326 -16.08744 -15.65855 -15.40935 -15.00782 -14.95883 -14.39370 -14.34683 -13.93695 -13.83476 -13.68496 -12.90279 -12.73233 -12.33991 -11.77965 -11.72220 -11.43582 -11.26174 -11.13309 -10.87543 -10.80455 -10.62685 -10.16529 -10.03305 -9.64897 -9.40215 -9.03092 -8.46899 -8.25743 -7.44472 -6.09640 -4.13872 0.91020 1.15749 2.35160 2.96111 3.28697 3.33233 3.36104 3.46585 4.23784 4.33705 4.43468 4.52836 4.82205 4.84682 4.93731 5.18418 5.22828 5.26224 5.27069 5.61861 5.68590 5.87158 6.02288 6.07209 6.22698 6.52802 6.68021 6.77028 6.88961 6.93596 7.19167 7.26693 7.56321 7.70106 7.79887 7.92931 8.19757 8.39757 8.90869 9.51517 10.97399 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.032671 B = 0.004194 C = 0.004048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.824407 B = 6675.255415 C = 6914.755859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.287 6.287 3 C -0.058 4.058 4 C -0.010 4.010 5 O -0.188 6.188 6 C 0.177 3.823 7 C 0.090 3.910 8 N -0.527 5.527 9 C 0.021 3.979 10 C 0.213 3.787 11 H 0.043 0.957 12 C -0.176 4.176 13 C -0.502 4.502 14 H 0.063 0.937 15 C 0.060 3.940 16 N -0.894 5.894 17 Si 0.899 3.101 18 H -0.276 1.276 19 H -0.288 1.288 20 H -0.277 1.277 21 C -0.320 4.320 22 C 0.412 3.588 23 O -0.485 6.485 24 H 0.056 0.944 25 H 0.057 0.943 26 H 0.104 0.896 27 H 0.195 0.805 28 H 0.074 0.926 29 H 0.098 0.902 30 H 0.026 0.974 31 H 0.049 0.951 32 H 0.078 0.922 33 H 0.035 0.965 34 H 0.008 0.992 35 H 0.091 0.909 36 H 0.262 0.738 37 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.932 -11.311 5.923 15.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.201 6.201 3 C -0.105 4.105 4 C -0.076 4.076 5 O -0.089 6.089 6 C 0.127 3.873 7 C -0.038 4.038 8 N -0.251 5.251 9 C -0.127 4.127 10 C 0.108 3.892 11 H 0.061 0.939 12 C -0.235 4.235 13 C -0.540 4.540 14 H 0.081 0.919 15 C -0.141 4.141 16 N -0.533 5.533 17 Si 0.727 3.273 18 H -0.202 1.202 19 H -0.214 1.214 20 H -0.203 1.203 21 C -0.341 4.341 22 C 0.301 3.699 23 O -0.370 6.370 24 H 0.074 0.926 25 H 0.076 0.924 26 H 0.123 0.877 27 H 0.212 0.788 28 H 0.091 0.909 29 H 0.116 0.884 30 H 0.045 0.955 31 H 0.067 0.933 32 H 0.097 0.903 33 H 0.054 0.946 34 H 0.027 0.973 35 H 0.110 0.890 36 H 0.072 0.928 37 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -8.049 -11.643 5.696 15.258 hybrid contribution 0.450 0.449 -0.538 0.833 sum -7.599 -11.194 5.158 14.480 Atomic orbital electron populations 1.23176 0.78949 1.04654 1.01244 1.86281 1.20543 1.24173 1.89054 1.21129 0.95703 0.85728 1.07938 1.23801 0.98101 0.81750 1.03954 1.82967 1.21364 1.30054 1.74554 1.22942 0.79142 0.98150 0.87077 1.21221 0.99096 0.88497 0.94978 1.62446 1.46696 1.06527 1.09467 1.22458 0.93278 0.96062 1.00926 1.19393 0.91786 0.80358 0.97704 0.93878 1.22454 1.00686 1.04818 0.95535 1.21012 1.45606 0.95337 0.92065 0.91877 1.24905 0.95167 0.96640 0.97419 1.69857 1.46540 1.05380 1.31551 0.86548 0.78573 0.77543 0.84683 1.20194 1.21353 1.20304 1.22521 1.02734 0.91488 1.17329 1.17081 0.85857 0.90191 0.76727 1.90803 1.65031 1.38515 1.42688 0.92564 0.92426 0.87738 0.78848 0.90874 0.88414 0.95509 0.93265 0.90310 0.94609 0.97327 0.88996 0.92812 0.82099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.82 101.05 0.99 1.10 16 2 O -0.29 -3.83 10.36 -35.03 -0.36 -4.19 16 3 C -0.06 -0.81 6.72 -39.16 -0.26 -1.08 16 4 C -0.01 -0.12 10.43 29.62 0.31 0.19 16 5 O -0.19 -2.58 9.74 7.84 0.08 -2.50 16 6 C 0.18 2.60 5.99 -35.51 -0.21 2.39 16 7 C 0.09 1.42 4.88 -4.97 -0.02 1.40 16 8 N -0.53 -10.31 4.69 -237.73 -1.12 -11.42 16 9 C 0.02 0.39 8.42 60.06 0.51 0.89 16 10 C 0.21 4.92 2.31 -68.87 -0.16 4.76 16 11 H 0.04 1.08 7.93 -51.93 -0.41 0.67 16 12 C -0.18 -3.89 8.22 37.16 0.31 -3.59 16 13 C -0.50 -12.99 7.97 -34.44 -0.27 -13.26 16 14 H 0.06 1.65 7.10 -52.49 -0.37 1.28 16 15 C 0.06 1.58 5.30 -17.82 -0.09 1.49 16 16 N -0.89 -24.26 11.32 55.43 0.63 -23.64 16 17 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 16 18 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 19 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 21 C -0.32 -4.83 7.79 -39.46 -0.31 -5.14 16 22 C 0.41 6.91 6.81 -36.72 -0.25 6.66 16 23 O -0.48 -9.70 17.75 -10.25 -0.18 -9.88 16 24 H 0.06 0.32 7.67 -51.93 -0.40 -0.08 16 25 H 0.06 0.35 7.67 -51.93 -0.40 -0.05 16 26 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.20 1.42 6.22 -52.48 -0.33 1.09 16 28 H 0.07 1.08 6.98 -51.93 -0.36 0.72 16 29 H 0.10 1.48 7.93 -51.93 -0.41 1.07 16 30 H 0.03 0.48 6.21 -51.93 -0.32 0.15 16 31 H 0.05 0.82 5.88 -51.93 -0.31 0.52 16 32 H 0.08 1.57 6.86 -51.93 -0.36 1.21 16 33 H 0.03 0.77 6.33 -51.93 -0.33 0.44 16 34 H 0.01 0.15 6.91 -51.93 -0.36 -0.21 16 35 H 0.09 2.29 6.07 -51.93 -0.32 1.98 16 36 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 37 H 0.16 2.32 7.93 -52.49 -0.42 1.91 16 LS Contribution 303.52 15.07 4.57 4.57 Total: -1.00 -30.79 303.52 -5.52 -36.30 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: -4.64 Total: -0.66 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: 0.53 Total: -4.18 kcal Atomic # 7 Polarization: -34.57 SS G_CDS: -0.49 Total: -35.06 kcal Atomic # 8 Polarization: -16.10 SS G_CDS: -0.47 Total: -16.57 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -30.79 -5.52 -36.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268503298.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.088 kcal (2) G-P(sol) polarization free energy of solvation -30.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds