Wall clock time and date at job start Mon Mar 30 2020 00:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.36085 * 116.99989 * 2 1 4 4 C 1.35104 * 120.55910 * 0.02562 * 3 2 1 5 5 O 1.34031 * 120.85885 * 179.72559 * 4 3 2 6 6 C 1.33772 * 122.05521 * 0.53425 * 5 4 3 7 7 C 1.50699 * 119.48237 * 179.74878 * 6 5 4 8 8 N 1.46904 * 109.47221 * 269.72436 * 7 6 5 9 9 C 1.46896 * 110.99663 * 293.95397 * 8 7 6 10 10 C 1.46894 * 110.99915 * 170.00202 * 8 7 6 11 11 H 1.09002 * 109.47104 * 309.99793 * 10 8 7 12 12 C 1.52997 * 109.47515 * 70.00061 * 10 8 7 13 13 C 1.50708 * 109.46991 * 190.00244 * 10 8 7 14 14 H 1.08000 * 119.99723 * 359.97438 * 13 10 8 15 15 C 1.37873 * 119.99930 * 179.97438 * 13 10 8 16 16 N 1.31509 * 120.00195 * 0.02562 * 15 13 10 17 17 Si 1.86803 * 119.99968 * 179.97438 * 15 13 10 18 18 H 1.48498 * 109.46680 * 60.00159 * 17 15 13 19 19 H 1.48492 * 109.47298 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.46944 * 300.00675 * 17 15 13 21 21 C 1.34848 * 121.03193 * 359.46938 * 6 5 4 22 22 C 1.41718 * 119.01899 * 0.25656 * 21 6 5 23 23 O 1.22171 * 120.92400 * 180.02562 * 22 21 6 24 24 H 1.09000 * 109.46700 * 300.00022 * 1 2 3 25 25 H 1.08993 * 109.46743 * 60.00234 * 1 2 3 26 26 H 1.08998 * 109.47083 * 180.02562 * 1 2 3 27 27 H 1.08004 * 119.57468 * 359.96740 * 4 3 2 28 28 H 1.08999 * 109.47292 * 149.72478 * 7 6 5 29 29 H 1.08998 * 109.46979 * 29.72413 * 7 6 5 30 30 H 1.08998 * 109.47503 * 296.04235 * 9 8 7 31 31 H 1.09007 * 109.47634 * 56.04710 * 9 8 7 32 32 H 1.09003 * 109.46925 * 176.04443 * 9 8 7 33 33 H 1.09002 * 109.47153 * 59.99762 * 12 10 8 34 34 H 1.09001 * 109.46832 * 299.99953 * 12 10 8 35 35 H 1.09004 * 109.47261 * 179.97438 * 12 10 8 36 36 H 0.97006 * 120.00358 * 179.97438 * 16 15 13 37 37 H 1.08001 * 120.48673 * 180.23976 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0469 1.2125 0.0000 4 6 1.3221 2.3527 0.0005 5 8 1.9244 3.5501 0.0060 6 6 3.2562 3.6750 0.0007 7 6 3.8722 5.0504 0.0016 8 7 4.0725 5.4982 -1.3831 9 6 5.0736 4.6674 -2.0654 10 6 4.4474 6.9177 -1.4283 11 1 3.7481 7.4976 -0.8258 12 6 5.8628 7.0894 -0.8733 13 6 4.4046 7.4035 -2.8543 14 1 4.1271 6.7253 -3.6476 15 6 4.7197 8.7137 -3.1460 16 7 5.0581 9.5393 -2.1800 17 14 4.6673 9.3156 -4.9136 18 1 3.2939 9.1482 -5.4529 19 1 5.0461 10.7506 -4.9593 20 1 5.6207 8.5259 -5.7339 21 6 4.0562 2.5895 0.0001 22 6 3.4665 1.3008 -0.0003 23 8 4.1582 0.2938 -0.0004 24 1 -0.3633 0.5139 0.8900 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 0.2434 2.2987 0.0004 28 1 4.8329 5.0179 0.5155 29 1 3.2084 5.7454 0.5158 30 1 6.0405 4.7892 -1.5774 31 1 4.7715 3.6211 -2.0171 32 1 5.1515 4.9752 -3.1081 33 1 6.5621 6.5096 -1.4757 34 1 5.8937 6.7381 0.1581 35 1 6.1411 8.1428 -0.9072 36 1 5.2802 10.4611 -2.3853 37 1 5.1305 2.7005 -0.0004 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000268503298.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:15 Heat of formation + Delta-G solvation = -71.212432 kcal Electronic energy + Delta-G solvation = -20487.760151 eV Core-core repulsion = 17232.135374 eV Total energy + Delta-G solvation = -3255.624777 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.11559 -40.27255 -39.23082 -38.96764 -35.19127 -33.68505 -32.64108 -30.39259 -28.88033 -28.50517 -27.24955 -25.84967 -24.92189 -23.42867 -21.17225 -19.81391 -19.58386 -18.35490 -17.86983 -17.59483 -16.98313 -16.51381 -16.37703 -16.03665 -15.88069 -15.41159 -15.27580 -15.21391 -15.08286 -14.41363 -14.19808 -13.62471 -13.25817 -12.96696 -12.83948 -12.61125 -12.53847 -12.40884 -12.39561 -12.22307 -12.02560 -11.79420 -10.98212 -10.87228 -10.52878 -10.45503 -9.33844 -9.00135 -8.08707 -6.18450 -0.24278 0.04589 1.27551 1.46600 1.47106 1.54401 2.11028 2.28007 2.45996 3.21204 3.21967 3.32200 3.44272 3.53820 4.00948 4.25428 4.32957 4.38148 4.41552 4.46758 4.55037 4.63883 4.72385 4.74292 4.83966 4.92540 4.96304 5.12901 5.18939 5.52454 5.72198 5.79465 6.02899 6.08496 6.18207 6.40759 6.61142 6.62910 6.92331 7.50321 8.96727 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.032671 B = 0.004194 C = 0.004048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.824407 B = 6675.255415 C = 6914.755859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.002 3.998 2 O -0.316 6.316 3 C -0.079 4.079 4 C 0.019 3.981 5 O -0.188 6.188 6 C 0.185 3.815 7 C 0.091 3.909 8 N -0.538 5.538 9 C 0.027 3.973 10 C 0.218 3.782 11 H 0.021 0.979 12 C -0.164 4.164 13 C -0.515 4.515 14 H 0.055 0.945 15 C 0.017 3.983 16 N -0.917 5.917 17 Si 0.953 3.047 18 H -0.274 1.274 19 H -0.286 1.286 20 H -0.275 1.275 21 C -0.319 4.319 22 C 0.398 3.602 23 O -0.536 6.536 24 H 0.078 0.922 25 H 0.074 0.926 26 H 0.120 0.880 27 H 0.243 0.757 28 H 0.088 0.912 29 H 0.106 0.894 30 H 0.032 0.968 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.034 0.966 34 H 0.034 0.966 35 H 0.063 0.937 36 H 0.261 0.739 37 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.535 -11.564 6.036 16.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 O -0.231 6.231 3 C -0.126 4.126 4 C -0.046 4.046 5 O -0.088 6.088 6 C 0.135 3.865 7 C -0.036 4.036 8 N -0.262 5.262 9 C -0.121 4.121 10 C 0.112 3.888 11 H 0.039 0.961 12 C -0.224 4.224 13 C -0.553 4.553 14 H 0.073 0.927 15 C -0.182 4.182 16 N -0.557 5.557 17 Si 0.780 3.220 18 H -0.199 1.199 19 H -0.212 1.212 20 H -0.200 1.200 21 C -0.340 4.340 22 C 0.291 3.709 23 O -0.427 6.427 24 H 0.097 0.903 25 H 0.093 0.907 26 H 0.138 0.862 27 H 0.259 0.741 28 H 0.105 0.895 29 H 0.124 0.876 30 H 0.050 0.950 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.082 0.918 36 H 0.070 0.930 37 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -9.679 -11.892 5.811 16.397 hybrid contribution 0.826 0.492 -0.533 1.099 sum -8.853 -11.399 5.278 15.368 Atomic orbital electron populations 1.23575 0.75965 1.06529 1.03076 1.86247 1.23640 1.23907 1.89311 1.20886 0.94769 0.87087 1.09828 1.24537 0.99585 0.79995 1.00485 1.82986 1.20785 1.31315 1.73733 1.22632 0.79634 0.97213 0.87065 1.21236 1.00252 0.89185 0.92971 1.62248 1.46931 1.04938 1.12059 1.22384 0.93415 0.96544 0.99717 1.19127 0.91654 0.82190 0.95850 0.96065 1.22267 1.00014 1.02952 0.97119 1.21306 1.45202 0.95434 0.93404 0.92719 1.25567 0.95099 0.96945 1.00621 1.69972 1.47301 1.05462 1.32996 0.85686 0.78512 0.77000 0.80850 1.19927 1.21158 1.20019 1.22515 1.03072 0.91171 1.17265 1.17554 0.87423 0.90031 0.75882 1.90773 1.66273 1.39795 1.45819 0.90308 0.90735 0.86174 0.74120 0.89468 0.87567 0.94981 0.91701 0.92273 0.94679 0.94693 0.91841 0.92953 0.81860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.03 9.82 113.37 1.11 1.14 16 2 O -0.32 -7.96 10.36 -80.17 -0.83 -8.79 16 3 C -0.08 -2.08 6.72 22.54 0.15 -1.93 16 4 C 0.02 0.38 10.43 67.10 0.70 1.08 16 5 O -0.19 -4.57 9.74 5.13 0.05 -4.52 16 6 C 0.19 5.06 5.99 24.91 0.15 5.21 16 7 C 0.09 2.70 4.88 85.56 0.42 3.11 16 8 N -0.54 -20.36 4.69 -906.04 -4.25 -24.62 16 9 C 0.03 0.98 8.42 127.69 1.08 2.06 16 10 C 0.22 9.98 2.31 44.17 0.10 10.08 16 11 H 0.02 1.07 7.93 -2.39 -0.02 1.05 16 12 C -0.16 -7.17 8.22 71.98 0.59 -6.57 16 13 C -0.51 -26.63 7.97 25.60 0.20 -26.42 16 14 H 0.05 2.86 7.10 -2.91 -0.02 2.84 16 15 C 0.02 0.87 5.30 84.65 0.45 1.32 16 16 N -0.92 -50.00 11.32 21.44 0.24 -49.75 16 17 Si 0.95 42.12 29.54 68.60 2.03 44.15 16 18 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 19 H -0.29 -12.46 7.11 99.48 0.71 -11.75 16 20 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 21 C -0.32 -9.31 7.79 22.35 0.17 -9.13 16 22 C 0.40 13.22 6.81 24.12 0.16 13.38 16 23 O -0.54 -22.04 17.75 8.48 0.15 -21.89 16 24 H 0.08 0.56 7.67 -2.39 -0.02 0.55 16 25 H 0.07 0.62 7.67 -2.39 -0.02 0.60 16 26 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.24 2.26 6.22 -2.91 -0.02 2.24 16 28 H 0.09 2.37 6.98 -2.39 -0.02 2.35 16 29 H 0.11 2.98 7.93 -2.39 -0.02 2.96 16 30 H 0.03 1.10 6.21 -2.39 -0.01 1.09 16 31 H 0.06 2.10 5.88 -2.38 -0.01 2.08 16 32 H 0.06 2.33 6.86 -2.39 -0.02 2.31 16 33 H 0.03 1.49 6.33 -2.39 -0.02 1.48 16 34 H 0.03 1.29 6.91 -2.39 -0.02 1.28 16 35 H 0.06 3.16 6.07 -2.38 -0.01 3.15 16 36 H 0.26 13.70 8.31 -92.70 -0.77 12.93 16 37 H 0.16 4.59 7.93 -2.91 -0.02 4.56 16 Total: -1.00 -67.58 303.52 3.76 -63.81 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: 1.09 Total: 8.28 kcal Atomic # 6 Polarization: -11.97 SS G_CDS: 5.29 Total: -6.68 kcal Atomic # 7 Polarization: -70.36 SS G_CDS: -4.01 Total: -74.37 kcal Atomic # 8 Polarization: -34.56 SS G_CDS: -0.63 Total: -35.20 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.15 kcal Total: -67.58 3.76 -63.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268503298.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.397 kcal (2) G-P(sol) polarization free energy of solvation -67.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds