Wall clock time and date at job start Mon Mar 30 2020 00:48:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34230 * 117.00151 * 2 1 4 4 O 1.20825 * 119.99561 * 0.02562 * 3 2 1 5 5 C 1.50695 * 120.00039 * 179.97438 * 3 2 1 6 6 H 1.08998 * 112.91425 * 311.24904 * 5 3 2 7 7 C 1.53782 * 113.61449 * 82.50595 * 5 3 2 8 8 C 1.53781 * 87.08243 * 139.97688 * 7 5 3 9 9 C 1.53769 * 87.08215 * 334.56714 * 8 7 5 10 10 H 1.09003 * 113.61838 * 270.79866 * 9 8 7 11 11 C 1.50701 * 113.61750 * 139.98178 * 9 8 7 12 12 O 1.21293 * 119.99923 * 259.50379 * 11 9 8 13 13 N 1.34773 * 119.99960 * 79.50097 * 11 9 8 14 14 C 1.37104 * 120.00155 * 180.02562 * 13 11 9 15 15 H 1.08001 * 120.00219 * 137.53156 * 14 13 11 16 16 C 1.38953 * 119.99488 * 317.53010 * 14 13 11 17 17 N 1.31411 * 120.00333 * 340.59434 * 16 14 13 18 18 Si 1.86796 * 119.99770 * 160.59449 * 16 14 13 19 19 H 1.48503 * 109.47505 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47336 * 120.00048 * 18 16 14 21 21 H 1.48502 * 109.47390 * 240.00063 * 18 16 14 22 22 C 1.46500 * 120.00181 * 0.02562 * 13 11 9 23 23 C 1.52999 * 117.49952 * 245.26012 * 22 13 11 24 24 C 1.53004 * 60.03162 * 252.49653 * 23 22 13 25 25 H 1.09005 * 109.47350 * 60.00295 * 1 2 3 26 26 H 1.09001 * 109.47238 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47198 * 299.99857 * 1 2 3 28 28 H 1.09000 * 113.61490 * 25.42631 * 7 5 3 29 29 H 1.09006 * 113.61331 * 254.52772 * 7 5 3 30 30 H 1.08995 * 113.61592 * 220.01302 * 8 7 5 31 31 H 1.09001 * 113.69020 * 89.12947 * 8 7 5 32 32 H 0.97002 * 120.00198 * 175.35593 * 17 16 14 33 33 H 1.08995 * 115.54646 * 30.92942 * 22 13 11 34 34 H 1.08999 * 117.50150 * 359.97438 * 23 22 13 35 35 H 1.09002 * 117.49969 * 145.00253 * 23 22 13 36 36 H 1.08999 * 117.49981 * 107.50270 * 24 23 22 37 37 H 1.09001 * 117.50050 * 252.52394 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 1 4.0244 0.6361 0.7557 7 6 4.1916 1.1232 -1.3962 8 6 5.1813 2.2267 -0.9866 9 6 4.1077 2.7142 0.0004 10 1 3.4183 3.4415 -0.4284 11 6 4.6644 3.1499 1.3314 12 8 4.6053 2.4048 2.2867 13 7 5.2281 4.3673 1.4601 14 6 5.7350 4.7635 2.6708 15 1 6.6821 5.2805 2.7166 16 6 5.0302 4.4998 3.8389 17 7 3.7451 4.2306 3.7844 18 14 5.9094 4.5279 5.4867 19 1 7.3428 4.8549 5.2776 20 1 5.2901 5.5563 6.3608 21 1 5.7944 3.1954 6.1321 22 6 5.2991 5.2674 0.3064 23 6 6.6877 5.6170 -0.2324 24 6 5.8794 6.6653 0.5348 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 3.5242 1.4144 -2.2073 29 1 4.6621 0.1539 -1.5611 30 1 5.3968 2.9379 -1.7839 31 1 6.0816 1.8495 -0.5014 32 1 3.2673 3.9806 4.5907 33 1 4.4887 5.1704 -0.4160 34 1 7.5485 5.1777 0.2717 35 1 6.7909 5.7502 -1.3094 36 1 6.2083 6.9154 1.5434 37 1 5.4504 7.4879 -0.0375 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000285002467.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:21 Heat of formation + Delta-G solvation = -57.460264 kcal Electronic energy + Delta-G solvation = -21287.771724 eV Core-core repulsion = 18032.743285 eV Total energy + Delta-G solvation = -3255.028438 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.55118 -38.97074 -37.28739 -35.97782 -35.61911 -32.70104 -30.85776 -28.40361 -26.73362 -25.97387 -24.29191 -21.68684 -21.47027 -21.08219 -19.98392 -18.53248 -17.69759 -16.67569 -16.31558 -16.02551 -15.95723 -14.64282 -14.60570 -13.99558 -13.76800 -13.49079 -13.15327 -13.07703 -12.64036 -12.37054 -11.90271 -11.83411 -11.41662 -11.32897 -10.98954 -10.87391 -10.83412 -10.74571 -10.56886 -10.32062 -10.19130 -10.10811 -9.93590 -9.84837 -9.68117 -8.66204 -7.93886 -7.01104 -6.03603 -3.82559 2.57010 3.02297 3.34002 3.42473 3.44530 4.10072 4.32204 4.69065 4.73603 4.82063 4.87282 5.08745 5.21936 5.22634 5.30371 5.36309 5.45597 5.62676 5.66833 5.71397 5.81246 5.88291 6.00772 6.05070 6.15286 6.17693 6.24730 6.35410 6.50532 6.65779 6.74209 6.79650 6.95724 7.65911 8.11650 8.30568 9.10752 9.20518 9.71226 10.33519 11.02560 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.018059 B = 0.007346 C = 0.005875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.084172 B = 3810.819903 C = 4765.072269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.362 6.362 3 C 0.474 3.526 4 O -0.501 6.501 5 C -0.086 4.086 6 H 0.134 0.866 7 C -0.122 4.122 8 C -0.119 4.119 9 C -0.106 4.106 10 H 0.108 0.892 11 C 0.493 3.507 12 O -0.534 6.534 13 N -0.424 5.424 14 C -0.346 4.346 15 H 0.078 0.922 16 C 0.072 3.928 17 N -0.826 5.826 18 Si 0.905 3.095 19 H -0.271 1.271 20 H -0.287 1.287 21 H -0.281 1.281 22 C 0.078 3.922 23 C -0.205 4.205 24 C -0.176 4.176 25 H 0.059 0.941 26 H 0.096 0.904 27 H 0.062 0.938 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.263 0.737 33 H 0.102 0.898 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.106 0.894 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.735 -4.693 -11.304 12.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.279 6.279 3 C 0.317 3.683 4 O -0.388 6.388 5 C -0.106 4.106 6 H 0.152 0.848 7 C -0.160 4.160 8 C -0.157 4.157 9 C -0.127 4.127 10 H 0.126 0.874 11 C 0.281 3.719 12 O -0.412 6.412 13 N -0.144 5.144 14 C -0.473 4.473 15 H 0.096 0.904 16 C -0.139 4.139 17 N -0.459 5.459 18 Si 0.732 3.268 19 H -0.196 1.196 20 H -0.213 1.213 21 H -0.207 1.207 22 C -0.029 4.029 23 C -0.244 4.244 24 C -0.214 4.214 25 H 0.077 0.923 26 H 0.115 0.885 27 H 0.080 0.920 28 H 0.101 0.899 29 H 0.099 0.901 30 H 0.095 0.905 31 H 0.107 0.893 32 H 0.073 0.927 33 H 0.120 0.880 34 H 0.109 0.891 35 H 0.102 0.898 36 H 0.124 0.876 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.199 -4.770 -10.664 11.743 hybrid contribution -0.111 0.191 0.900 0.927 sum -1.310 -4.579 -9.764 10.864 Atomic orbital electron populations 1.23192 0.77242 1.03113 1.02403 1.86521 1.22794 1.34105 1.84470 1.23763 0.91924 0.81002 0.71620 1.90652 1.66929 1.36377 1.44802 1.22463 0.86594 1.00795 1.00725 0.84820 1.22852 0.98334 1.00362 0.94427 1.22751 0.97054 0.97599 0.98285 1.22657 0.97937 0.94820 0.97333 0.87395 1.19421 0.82522 0.82031 0.87949 1.90511 1.57906 1.52956 1.39872 1.42716 1.54510 1.10124 1.07032 1.18904 1.03396 1.42789 0.82216 0.90411 1.25179 0.93986 0.95601 0.99102 1.69926 1.06941 1.39643 1.29435 0.86271 0.79680 0.77614 0.83224 1.19598 1.21302 1.20723 1.21689 0.94567 0.93668 0.92947 1.23300 0.97215 1.05361 0.98566 1.23084 1.04197 0.92003 1.02121 0.92274 0.88524 0.91966 0.89919 0.90143 0.90472 0.89260 0.92710 0.88041 0.89123 0.89841 0.87558 0.89851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.56 101.05 1.07 1.50 16 2 O -0.36 -5.87 10.56 -39.26 -0.41 -6.29 16 3 C 0.47 8.93 7.48 36.00 0.27 9.20 16 4 O -0.50 -10.87 15.65 -18.75 -0.29 -11.17 16 5 C -0.09 -1.54 3.57 -90.96 -0.32 -1.87 16 6 H 0.13 2.54 7.47 -51.93 -0.39 2.15 16 7 C -0.12 -1.62 7.63 -25.92 -0.20 -1.82 16 8 C -0.12 -1.77 7.47 -25.92 -0.19 -1.97 16 9 C -0.11 -2.08 2.29 -90.96 -0.21 -2.29 16 10 H 0.11 2.17 6.55 -51.93 -0.34 1.83 16 11 C 0.49 12.56 6.50 -10.99 -0.07 12.48 16 12 O -0.53 -15.74 13.55 5.55 0.08 -15.66 16 13 N -0.42 -10.69 2.85 -107.69 -0.31 -10.99 16 14 C -0.35 -9.54 8.00 -14.93 -0.12 -9.66 16 15 H 0.08 2.07 7.18 -52.49 -0.38 1.69 16 16 C 0.07 2.07 4.34 -17.47 -0.08 1.99 16 17 N -0.83 -25.32 11.66 55.50 0.65 -24.67 16 18 Si 0.91 22.23 29.60 -169.99 -5.03 17.20 16 19 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 22 C 0.08 1.57 5.77 -67.89 -0.39 1.18 16 23 C -0.21 -3.46 10.35 -26.73 -0.28 -3.73 16 24 C -0.18 -3.22 9.80 -26.69 -0.26 -3.48 16 25 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16 26 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 27 H 0.06 0.83 8.13 -51.93 -0.42 0.41 16 28 H 0.08 0.99 8.09 -51.93 -0.42 0.57 16 29 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 31 H 0.09 1.37 8.09 -51.93 -0.42 0.95 16 32 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 33 H 0.10 1.90 6.79 -51.93 -0.35 1.54 16 34 H 0.09 1.63 8.14 -51.93 -0.42 1.20 16 35 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 36 H 0.11 2.15 6.69 -51.93 -0.35 1.80 16 37 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 313.24 15.07 4.72 4.72 Total: -1.00 -35.01 313.24 -6.55 -41.56 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -5.16 Total: 3.77 kcal Atomic # 6 Polarization: 2.32 SS G_CDS: -0.78 Total: 1.53 kcal Atomic # 7 Polarization: -36.00 SS G_CDS: 0.34 Total: -35.66 kcal Atomic # 8 Polarization: -32.49 SS G_CDS: -0.63 Total: -33.12 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.03 Total: 17.20 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -35.01 -6.55 -41.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285002467.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.902 kcal (2) G-P(sol) polarization free energy of solvation -35.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds