Wall clock time and date at job start Mon Mar 30 2020 00:48:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34230 * 117.00151 * 2 1 4 4 O 1.20825 * 119.99561 * 0.02562 * 3 2 1 5 5 C 1.50695 * 120.00039 * 179.97438 * 3 2 1 6 6 H 1.08998 * 112.91425 * 311.24904 * 5 3 2 7 7 C 1.53782 * 113.61449 * 82.50595 * 5 3 2 8 8 C 1.53781 * 87.08243 * 139.97688 * 7 5 3 9 9 C 1.53769 * 87.08215 * 334.56714 * 8 7 5 10 10 H 1.09003 * 113.61838 * 270.79866 * 9 8 7 11 11 C 1.50701 * 113.61750 * 139.98178 * 9 8 7 12 12 O 1.21293 * 119.99923 * 259.50379 * 11 9 8 13 13 N 1.34773 * 119.99960 * 79.50097 * 11 9 8 14 14 C 1.37104 * 120.00155 * 180.02562 * 13 11 9 15 15 H 1.08001 * 120.00219 * 137.53156 * 14 13 11 16 16 C 1.38953 * 119.99488 * 317.53010 * 14 13 11 17 17 N 1.31411 * 120.00333 * 340.59434 * 16 14 13 18 18 Si 1.86796 * 119.99770 * 160.59449 * 16 14 13 19 19 H 1.48503 * 109.47505 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47336 * 120.00048 * 18 16 14 21 21 H 1.48502 * 109.47390 * 240.00063 * 18 16 14 22 22 C 1.46500 * 120.00181 * 0.02562 * 13 11 9 23 23 C 1.52999 * 117.49952 * 245.26012 * 22 13 11 24 24 C 1.53004 * 60.03162 * 252.49653 * 23 22 13 25 25 H 1.09005 * 109.47350 * 60.00295 * 1 2 3 26 26 H 1.09001 * 109.47238 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47198 * 299.99857 * 1 2 3 28 28 H 1.09000 * 113.61490 * 25.42631 * 7 5 3 29 29 H 1.09006 * 113.61331 * 254.52772 * 7 5 3 30 30 H 1.08995 * 113.61592 * 220.01302 * 8 7 5 31 31 H 1.09001 * 113.69020 * 89.12947 * 8 7 5 32 32 H 0.97002 * 120.00198 * 175.35593 * 17 16 14 33 33 H 1.08995 * 115.54646 * 30.92942 * 22 13 11 34 34 H 1.08999 * 117.50150 * 359.97438 * 23 22 13 35 35 H 1.09002 * 117.49969 * 145.00253 * 23 22 13 36 36 H 1.08999 * 117.49981 * 107.50270 * 24 23 22 37 37 H 1.09001 * 117.50050 * 252.52394 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 1 4.0244 0.6361 0.7557 7 6 4.1916 1.1232 -1.3962 8 6 5.1813 2.2267 -0.9866 9 6 4.1077 2.7142 0.0004 10 1 3.4183 3.4415 -0.4284 11 6 4.6644 3.1499 1.3314 12 8 4.6053 2.4048 2.2867 13 7 5.2281 4.3673 1.4601 14 6 5.7350 4.7635 2.6708 15 1 6.6821 5.2805 2.7166 16 6 5.0302 4.4998 3.8389 17 7 3.7451 4.2306 3.7844 18 14 5.9094 4.5279 5.4867 19 1 7.3428 4.8549 5.2776 20 1 5.2901 5.5563 6.3608 21 1 5.7944 3.1954 6.1321 22 6 5.2991 5.2674 0.3064 23 6 6.6877 5.6170 -0.2324 24 6 5.8794 6.6653 0.5348 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 3.5242 1.4144 -2.2073 29 1 4.6621 0.1539 -1.5611 30 1 5.3968 2.9379 -1.7839 31 1 6.0816 1.8495 -0.5014 32 1 3.2673 3.9806 4.5907 33 1 4.4887 5.1704 -0.4160 34 1 7.5485 5.1777 0.2717 35 1 6.7909 5.7502 -1.3094 36 1 6.2083 6.9154 1.5434 37 1 5.4504 7.4879 -0.0375 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000285002467.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:21 Heat of formation + Delta-G solvation = -80.115621 kcal Electronic energy + Delta-G solvation = -21288.754134 eV Core-core repulsion = 18032.743285 eV Total energy + Delta-G solvation = -3256.010848 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.99019 -40.58476 -38.76818 -37.53987 -37.23511 -34.70944 -32.81410 -29.65059 -28.39185 -27.18042 -26.10500 -23.13654 -22.91988 -22.56046 -21.65081 -20.07444 -19.20318 -18.21821 -17.90158 -17.71319 -17.33397 -16.67262 -16.18800 -15.60429 -15.29324 -15.02302 -14.74901 -14.38978 -14.04279 -13.89840 -13.61733 -13.08144 -13.01140 -12.85714 -12.70703 -12.70034 -12.45958 -12.20382 -12.05125 -11.89973 -11.83706 -11.68282 -11.43585 -11.24703 -11.15675 -10.70326 -9.87194 -9.00237 -8.17297 -5.99180 1.12374 1.34520 1.40549 1.49464 1.76256 2.25536 2.41282 3.07470 3.14954 3.34010 3.40612 3.58245 3.83550 3.84966 4.12376 4.13509 4.27762 4.28681 4.30320 4.37258 4.52515 4.64562 4.71331 4.73102 4.88238 4.92880 5.06585 5.07266 5.09555 5.31276 5.32259 5.44243 5.46666 5.51225 6.18623 6.70823 7.03949 7.22062 7.72114 8.37994 8.87523 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.018059 B = 0.007346 C = 0.005875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.084172 B = 3810.819903 C = 4765.072269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.361 6.361 3 C 0.474 3.526 4 O -0.540 6.540 5 C -0.099 4.099 6 H 0.116 0.884 7 C -0.094 4.094 8 C -0.104 4.104 9 C -0.111 4.111 10 H 0.103 0.897 11 C 0.478 3.522 12 O -0.590 6.590 13 N -0.441 5.441 14 C -0.349 4.349 15 H 0.082 0.918 16 C 0.016 3.984 17 N -0.872 5.872 18 Si 0.965 3.035 19 H -0.253 1.253 20 H -0.278 1.278 21 H -0.295 1.295 22 C 0.044 3.956 23 C -0.167 4.167 24 C -0.178 4.178 25 H 0.069 0.931 26 H 0.138 0.862 27 H 0.046 0.954 28 H 0.103 0.897 29 H 0.111 0.889 30 H 0.108 0.892 31 H 0.083 0.917 32 H 0.254 0.746 33 H 0.117 0.883 34 H 0.078 0.922 35 H 0.128 0.872 36 H 0.079 0.921 37 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.389 -4.848 -14.017 14.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.278 6.278 3 C 0.319 3.681 4 O -0.429 6.429 5 C -0.119 4.119 6 H 0.134 0.866 7 C -0.131 4.131 8 C -0.141 4.141 9 C -0.133 4.133 10 H 0.121 0.879 11 C 0.268 3.732 12 O -0.472 6.472 13 N -0.161 5.161 14 C -0.477 4.477 15 H 0.099 0.901 16 C -0.189 4.189 17 N -0.508 5.508 18 Si 0.790 3.210 19 H -0.177 1.177 20 H -0.204 1.204 21 H -0.222 1.222 22 C -0.061 4.061 23 C -0.206 4.206 24 C -0.216 4.216 25 H 0.087 0.913 26 H 0.156 0.844 27 H 0.065 0.935 28 H 0.121 0.879 29 H 0.129 0.871 30 H 0.126 0.874 31 H 0.101 0.899 32 H 0.064 0.936 33 H 0.135 0.865 34 H 0.096 0.904 35 H 0.146 0.854 36 H 0.098 0.902 37 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -0.041 -4.901 -13.413 14.280 hybrid contribution -0.475 0.244 1.701 1.783 sum -0.515 -4.657 -11.711 12.614 Atomic orbital electron populations 1.23556 0.75127 1.05810 1.02202 1.86504 1.24872 1.32629 1.83753 1.24005 0.92397 0.81127 0.70618 1.90629 1.67778 1.37654 1.46856 1.22588 0.86242 0.99427 1.03619 0.86603 1.22837 0.97125 1.01430 0.91682 1.22739 0.95741 0.98394 0.97246 1.22661 0.99892 0.95527 0.95174 0.87947 1.20441 0.81633 0.81639 0.89499 1.90459 1.59946 1.54552 1.42253 1.42974 1.54249 1.11096 1.07760 1.19191 1.03302 1.41558 0.83623 0.90077 1.26055 0.94505 0.95673 1.02674 1.70059 1.08574 1.42472 1.29689 0.85335 0.79555 0.76888 0.79188 1.17693 1.20362 1.22167 1.21961 0.97577 0.94320 0.92262 1.23311 0.94261 1.02303 1.00724 1.23147 1.04433 0.92285 1.01718 0.91263 0.84378 0.93466 0.87860 0.87075 0.87374 0.89885 0.93631 0.86509 0.90384 0.85375 0.90211 0.86753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 10.56 113.37 1.20 1.82 16 2 O -0.36 -11.46 10.56 -51.42 -0.54 -12.00 16 3 C 0.47 17.89 7.48 71.23 0.53 18.42 16 4 O -0.54 -23.87 15.65 21.97 0.34 -23.53 16 5 C -0.10 -3.51 3.57 -11.01 -0.04 -3.55 16 6 H 0.12 4.52 7.47 -2.39 -0.02 4.51 16 7 C -0.09 -2.17 7.63 31.12 0.24 -1.93 16 8 C -0.10 -2.79 7.47 31.12 0.23 -2.56 16 9 C -0.11 -4.33 2.29 -11.02 -0.03 -4.35 16 10 H 0.10 4.10 6.55 -2.39 -0.02 4.08 16 11 C 0.48 25.01 6.50 87.66 0.57 25.58 16 12 O -0.59 -36.45 13.55 -3.07 -0.04 -36.49 16 13 N -0.44 -22.57 2.85 -613.00 -1.75 -24.32 16 14 C -0.35 -19.67 8.00 84.04 0.67 -19.00 16 15 H 0.08 4.37 7.18 -2.91 -0.02 4.35 16 16 C 0.02 0.97 4.34 84.93 0.37 1.34 16 17 N -0.87 -56.05 11.66 21.66 0.25 -55.80 16 18 Si 0.97 47.13 29.60 68.60 2.03 49.16 16 19 H -0.25 -11.45 7.11 99.48 0.71 -10.74 16 20 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 21 H -0.29 -14.92 7.11 99.48 0.71 -14.21 16 22 C 0.04 1.71 5.77 45.02 0.26 1.97 16 23 C -0.17 -5.09 10.35 30.60 0.32 -4.77 16 24 C -0.18 -6.17 9.80 30.62 0.30 -5.87 16 25 H 0.07 1.53 8.13 -2.38 -0.02 1.51 16 26 H 0.14 2.12 8.14 -2.39 -0.02 2.10 16 27 H 0.05 1.27 8.13 -2.39 -0.02 1.25 16 28 H 0.10 2.03 8.09 -2.39 -0.02 2.01 16 29 H 0.11 1.96 8.14 -2.38 -0.02 1.94 16 30 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 31 H 0.08 2.37 8.09 -2.39 -0.02 2.35 16 32 H 0.25 15.94 8.31 -92.71 -0.77 15.17 16 33 H 0.12 4.16 6.79 -2.39 -0.02 4.14 16 34 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 35 H 0.13 2.81 8.14 -2.39 -0.02 2.79 16 36 H 0.08 3.20 6.69 -2.39 -0.02 3.18 16 37 H 0.11 3.22 8.14 -2.39 -0.02 3.20 16 Total: -1.00 -81.69 313.24 5.99 -75.70 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: 1.07 Total: 20.17 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: 4.62 Total: 7.10 kcal Atomic # 7 Polarization: -78.62 SS G_CDS: -1.49 Total: -80.12 kcal Atomic # 8 Polarization: -71.78 SS G_CDS: -0.24 Total: -72.02 kcal Atomic # 14 Polarization: 47.13 SS G_CDS: 2.03 Total: 49.16 kcal Total: -81.69 5.99 -75.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285002467.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.412 kcal (2) G-P(sol) polarization free energy of solvation -81.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds