Wall clock time and date at job start Mon Mar 30 2020 00:48:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34226 * 117.00265 * 2 1 4 4 O 1.20831 * 120.00085 * 359.97438 * 3 2 1 5 5 C 1.50703 * 120.00379 * 179.72549 * 3 2 1 6 6 H 1.08997 * 112.84541 * 64.37554 * 5 3 2 7 7 C 1.53782 * 113.61444 * 195.57556 * 5 3 2 8 8 C 1.53783 * 87.08314 * 139.97931 * 7 5 3 9 9 C 1.53781 * 113.61195 * 293.18053 * 5 3 2 10 10 H 1.08996 * 113.61699 * 105.46973 * 9 5 3 11 11 C 1.50703 * 113.61649 * 334.56567 * 9 5 3 12 12 O 1.21297 * 119.99594 * 323.55886 * 11 9 5 13 13 N 1.34772 * 120.00126 * 143.55715 * 11 9 5 14 14 C 1.37100 * 119.99765 * 179.97438 * 13 11 9 15 15 H 1.08000 * 119.99726 * 142.61220 * 14 13 11 16 16 C 1.38941 * 120.00129 * 322.60922 * 14 13 11 17 17 N 1.31415 * 119.99891 * 152.00518 * 16 14 13 18 18 Si 1.86804 * 120.00434 * 332.00610 * 16 14 13 19 19 H 1.48497 * 109.46878 * 96.28413 * 18 16 14 20 20 H 1.48496 * 109.47058 * 216.28525 * 18 16 14 21 21 H 1.48498 * 109.46585 * 336.28216 * 18 16 14 22 22 C 1.46503 * 120.00048 * 0.02562 * 13 11 9 23 23 C 1.53000 * 117.49766 * 182.67495 * 22 13 11 24 24 C 1.52997 * 117.50142 * 114.01244 * 22 13 11 25 25 H 1.08995 * 109.47048 * 299.99874 * 1 2 3 26 26 H 1.09003 * 109.46953 * 59.99470 * 1 2 3 27 27 H 1.08994 * 109.47177 * 179.97438 * 1 2 3 28 28 H 1.09004 * 113.61202 * 254.52612 * 7 5 3 29 29 H 1.08996 * 113.61944 * 25.42568 * 7 5 3 30 30 H 1.08997 * 113.61229 * 89.11091 * 8 7 5 31 31 H 1.08999 * 113.61157 * 220.01538 * 8 7 5 32 32 H 0.96999 * 120.00436 * 180.02562 * 17 16 14 33 33 H 1.09000 * 115.54864 * 328.34202 * 22 13 11 34 34 H 1.09000 * 117.49864 * 0.02562 * 23 22 13 35 35 H 1.08998 * 117.49669 * 145.02089 * 23 22 13 36 36 H 1.08996 * 117.50010 * 214.98230 * 24 22 13 37 37 H 1.09003 * 117.49838 * 359.97438 * 24 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2748 0.0063 6 1 4.0155 0.8612 -0.8966 7 6 4.1088 2.6634 0.3839 8 6 5.1915 1.9329 1.1957 9 6 4.2049 0.7560 1.3054 10 1 4.6762 -0.2212 1.2004 11 6 3.2934 0.8421 2.5025 12 8 2.5355 1.7816 2.6212 13 7 3.3204 -0.1248 3.4409 14 6 2.4915 -0.0462 4.5302 15 1 2.0417 -0.9420 4.9321 16 6 2.2304 1.1859 5.1169 17 7 1.0947 1.3859 5.7472 18 14 3.4934 2.5580 5.0099 19 1 3.1548 3.4551 3.8759 20 1 3.4879 3.3357 6.2749 21 1 4.8415 1.9740 4.7937 22 6 4.2362 -1.2593 3.2977 23 6 4.1753 -2.3553 4.3635 24 6 5.3636 -1.3911 4.3236 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 4.5026 3.2237 -0.4641 29 1 3.4233 3.2481 0.9972 30 1 6.0861 1.6985 0.6188 31 1 5.4150 2.4071 2.1514 32 1 0.9121 2.2461 6.1565 33 1 4.4497 -1.5647 2.2734 34 1 3.4535 -2.2325 5.1710 35 1 4.3491 -3.3817 4.0404 36 1 6.3186 -1.7836 3.9743 37 1 5.4242 -0.6335 5.1050 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000285002473.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:25 Heat of formation + Delta-G solvation = -45.203796 kcal Electronic energy + Delta-G solvation = -22089.452679 eV Core-core repulsion = 18834.955722 eV Total energy + Delta-G solvation = -3254.496958 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.69021 -39.08442 -37.46665 -36.00518 -35.59268 -32.84613 -31.44082 -28.21367 -27.01243 -25.90932 -24.24324 -22.02190 -21.61640 -21.14621 -20.08410 -18.68650 -17.58448 -16.57119 -16.35445 -15.94075 -15.78893 -15.34559 -14.61686 -14.12155 -13.88647 -13.55452 -13.15531 -12.82944 -12.74009 -12.48181 -12.38341 -11.84751 -11.54121 -11.50740 -11.19042 -11.06785 -10.71933 -10.68783 -10.34635 -10.25566 -10.19357 -10.05941 -9.95164 -9.71279 -9.60216 -8.54320 -8.34609 -7.50836 -6.24425 -3.88698 2.80364 3.20241 3.26212 3.46513 3.64520 3.71327 4.25315 4.46863 4.60049 4.65533 4.87849 5.01389 5.10044 5.24307 5.36222 5.40076 5.50208 5.58000 5.64120 5.64796 5.69249 5.76515 5.93792 6.00030 6.01176 6.15553 6.19080 6.26099 6.31294 6.64926 6.74653 6.83256 6.94840 7.81992 7.95734 8.34817 8.77729 8.92811 9.43820 9.84635 10.80801 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.016251 B = 0.009810 C = 0.009310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.511918 B = 2853.404625 C = 3006.932780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.359 6.359 3 C 0.479 3.521 4 O -0.496 6.496 5 C -0.090 4.090 6 H 0.124 0.876 7 C -0.114 4.114 8 C -0.127 4.127 9 C -0.116 4.116 10 H 0.097 0.903 11 C 0.458 3.542 12 O -0.531 6.531 13 N -0.422 5.422 14 C -0.359 4.359 15 H 0.097 0.903 16 C 0.104 3.896 17 N -0.851 5.851 18 Si 0.895 3.105 19 H -0.252 1.252 20 H -0.307 1.307 21 H -0.277 1.277 22 C 0.062 3.938 23 C -0.173 4.173 24 C -0.199 4.199 25 H 0.066 0.934 26 H 0.054 0.946 27 H 0.094 0.906 28 H 0.071 0.929 29 H 0.108 0.892 30 H 0.088 0.912 31 H 0.074 0.926 32 H 0.272 0.728 33 H 0.113 0.887 34 H 0.110 0.890 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.973 -4.736 -10.396 13.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.276 6.276 3 C 0.321 3.679 4 O -0.382 6.382 5 C -0.109 4.109 6 H 0.141 0.859 7 C -0.151 4.151 8 C -0.165 4.165 9 C -0.138 4.138 10 H 0.115 0.885 11 C 0.247 3.753 12 O -0.414 6.414 13 N -0.142 5.142 14 C -0.484 4.484 15 H 0.114 0.886 16 C -0.107 4.107 17 N -0.484 5.484 18 Si 0.725 3.275 19 H -0.177 1.177 20 H -0.236 1.236 21 H -0.203 1.203 22 C -0.043 4.043 23 C -0.211 4.211 24 C -0.238 4.238 25 H 0.085 0.915 26 H 0.072 0.928 27 H 0.113 0.887 28 H 0.089 0.911 29 H 0.127 0.873 30 H 0.107 0.893 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.131 0.869 34 H 0.128 0.872 35 H 0.106 0.894 36 H 0.105 0.895 37 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 7.177 -3.866 -10.213 13.068 hybrid contribution 0.429 0.517 0.149 0.688 sum 7.606 -3.349 -10.064 13.052 Atomic orbital electron populations 1.23141 0.76894 1.03003 1.02284 1.86444 1.23067 1.33736 1.84379 1.23202 0.91343 0.81388 0.71961 1.90608 1.66723 1.36410 1.44467 1.22403 0.87967 1.01019 0.99546 0.85864 1.22946 0.97734 0.94363 1.00059 1.22800 0.96369 0.95994 1.01301 1.22540 0.97339 1.00455 0.93492 0.88514 1.19495 0.86249 0.85945 0.83603 1.90616 1.41361 1.32444 1.76931 1.43082 1.32805 1.18749 1.19528 1.18681 1.24983 0.95946 1.08817 0.88591 1.25165 0.95008 0.97769 0.92774 1.69831 1.20300 1.24759 1.33537 0.86683 0.81143 0.83004 0.76681 1.17702 1.23612 1.20275 1.21864 0.95354 0.92612 0.94502 1.23136 1.01502 0.93745 1.02716 1.23287 0.92844 1.03469 1.04201 0.91471 0.92776 0.88723 0.91051 0.87324 0.89302 0.90750 0.91805 0.86940 0.87210 0.89432 0.89511 0.88647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.67 10.56 101.05 1.07 1.74 16 2 O -0.36 -6.85 10.56 -39.25 -0.41 -7.27 16 3 C 0.48 9.65 5.35 36.01 0.19 9.84 16 4 O -0.50 -11.47 15.64 -21.49 -0.34 -11.81 16 5 C -0.09 -1.47 4.20 -90.96 -0.38 -1.86 16 6 H 0.12 1.48 8.14 -51.93 -0.42 1.06 16 7 C -0.11 -1.89 6.88 -25.92 -0.18 -2.07 16 8 C -0.13 -1.96 7.67 -25.82 -0.20 -2.16 16 9 C -0.12 -2.06 3.84 -90.86 -0.35 -2.41 16 10 H 0.10 1.43 5.81 -51.93 -0.30 1.13 16 11 C 0.46 10.82 4.67 -10.99 -0.05 10.77 16 12 O -0.53 -14.73 9.31 2.08 0.02 -14.71 16 13 N -0.42 -10.09 2.56 -107.73 -0.28 -10.37 16 14 C -0.36 -10.00 8.78 -14.94 -0.13 -10.13 16 15 H 0.10 2.77 6.82 -52.49 -0.36 2.41 16 16 C 0.10 3.06 4.60 -17.47 -0.08 2.98 16 17 N -0.85 -26.12 13.96 55.50 0.77 -25.35 16 18 Si 0.90 24.04 25.16 -169.99 -4.28 19.76 16 19 H -0.25 -7.10 6.32 56.52 0.36 -6.74 16 20 H -0.31 -8.15 7.11 56.52 0.40 -7.75 16 21 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 22 C 0.06 1.16 5.79 -67.93 -0.39 0.76 16 23 C -0.17 -2.94 9.80 -26.69 -0.26 -3.20 16 24 C -0.20 -3.33 10.37 -26.69 -0.28 -3.61 16 25 H 0.07 1.29 8.13 -51.93 -0.42 0.87 16 26 H 0.05 0.79 8.13 -51.93 -0.42 0.37 16 27 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 28 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.11 2.29 6.62 -51.93 -0.34 1.95 16 30 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.07 1.30 8.10 -51.93 -0.42 0.88 16 32 H 0.27 7.93 8.31 -40.82 -0.34 7.59 16 33 H 0.11 1.75 6.31 -51.93 -0.33 1.42 16 34 H 0.11 2.13 6.43 -51.93 -0.33 1.80 16 35 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.10 1.83 8.14 -51.93 -0.42 1.41 16 LS Contribution 301.89 15.07 4.55 4.55 Total: -1.00 -35.32 301.89 -6.07 -41.39 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -5.07 Total: 3.14 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: -1.04 Total: 0.67 kcal Atomic # 7 Polarization: -36.21 SS G_CDS: 0.50 Total: -35.71 kcal Atomic # 8 Polarization: -33.06 SS G_CDS: -0.73 Total: -33.79 kcal Atomic # 14 Polarization: 24.04 SS G_CDS: -4.28 Total: 19.76 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -35.32 -6.07 -41.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285002473.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.813 kcal (2) G-P(sol) polarization free energy of solvation -35.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds