Wall clock time and date at job start Mon Mar 30 2020 00:48:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34226 * 117.00265 * 2 1 4 4 O 1.20831 * 120.00085 * 359.97438 * 3 2 1 5 5 C 1.50703 * 120.00379 * 179.72549 * 3 2 1 6 6 H 1.08997 * 112.84541 * 64.37554 * 5 3 2 7 7 C 1.53782 * 113.61444 * 195.57556 * 5 3 2 8 8 C 1.53783 * 87.08314 * 139.97931 * 7 5 3 9 9 C 1.53781 * 113.61195 * 293.18053 * 5 3 2 10 10 H 1.08996 * 113.61699 * 105.46973 * 9 5 3 11 11 C 1.50703 * 113.61649 * 334.56567 * 9 5 3 12 12 O 1.21297 * 119.99594 * 323.55886 * 11 9 5 13 13 N 1.34772 * 120.00126 * 143.55715 * 11 9 5 14 14 C 1.37100 * 119.99765 * 179.97438 * 13 11 9 15 15 H 1.08000 * 119.99726 * 142.61220 * 14 13 11 16 16 C 1.38941 * 120.00129 * 322.60922 * 14 13 11 17 17 N 1.31415 * 119.99891 * 152.00518 * 16 14 13 18 18 Si 1.86804 * 120.00434 * 332.00610 * 16 14 13 19 19 H 1.48497 * 109.46878 * 96.28413 * 18 16 14 20 20 H 1.48496 * 109.47058 * 216.28525 * 18 16 14 21 21 H 1.48498 * 109.46585 * 336.28216 * 18 16 14 22 22 C 1.46503 * 120.00048 * 0.02562 * 13 11 9 23 23 C 1.53000 * 117.49766 * 182.67495 * 22 13 11 24 24 C 1.52997 * 117.50142 * 114.01244 * 22 13 11 25 25 H 1.08995 * 109.47048 * 299.99874 * 1 2 3 26 26 H 1.09003 * 109.46953 * 59.99470 * 1 2 3 27 27 H 1.08994 * 109.47177 * 179.97438 * 1 2 3 28 28 H 1.09004 * 113.61202 * 254.52612 * 7 5 3 29 29 H 1.08996 * 113.61944 * 25.42568 * 7 5 3 30 30 H 1.08997 * 113.61229 * 89.11091 * 8 7 5 31 31 H 1.08999 * 113.61157 * 220.01538 * 8 7 5 32 32 H 0.96999 * 120.00436 * 180.02562 * 17 16 14 33 33 H 1.09000 * 115.54864 * 328.34202 * 22 13 11 34 34 H 1.09000 * 117.49864 * 0.02562 * 23 22 13 35 35 H 1.08998 * 117.49669 * 145.02089 * 23 22 13 36 36 H 1.08996 * 117.50010 * 214.98230 * 24 22 13 37 37 H 1.09003 * 117.49838 * 359.97438 * 24 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2748 0.0063 6 1 4.0155 0.8612 -0.8966 7 6 4.1088 2.6634 0.3839 8 6 5.1915 1.9329 1.1957 9 6 4.2049 0.7560 1.3054 10 1 4.6762 -0.2212 1.2004 11 6 3.2934 0.8421 2.5025 12 8 2.5355 1.7816 2.6212 13 7 3.3204 -0.1248 3.4409 14 6 2.4915 -0.0462 4.5302 15 1 2.0417 -0.9420 4.9321 16 6 2.2304 1.1859 5.1169 17 7 1.0947 1.3859 5.7472 18 14 3.4934 2.5580 5.0099 19 1 3.1548 3.4551 3.8759 20 1 3.4879 3.3357 6.2749 21 1 4.8415 1.9740 4.7937 22 6 4.2362 -1.2593 3.2977 23 6 4.1753 -2.3553 4.3635 24 6 5.3636 -1.3911 4.3236 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 4.5026 3.2237 -0.4641 29 1 3.4233 3.2481 0.9972 30 1 6.0861 1.6985 0.6188 31 1 5.4150 2.4071 2.1514 32 1 0.9121 2.2461 6.1565 33 1 4.4497 -1.5647 2.2734 34 1 3.4535 -2.2325 5.1710 35 1 4.3491 -3.3817 4.0404 36 1 6.3186 -1.7836 3.9743 37 1 5.4242 -0.6335 5.1050 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000285002473.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:25 Heat of formation + Delta-G solvation = -69.844975 kcal Electronic energy + Delta-G solvation = -22090.521201 eV Core-core repulsion = 18834.955722 eV Total energy + Delta-G solvation = -3255.565480 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.20321 -40.72098 -38.91729 -37.63266 -37.18300 -34.85409 -33.38671 -29.58547 -28.71131 -27.20519 -26.01834 -23.50701 -23.01984 -22.59904 -21.70796 -20.39220 -19.06920 -18.29870 -17.97294 -17.46551 -17.32538 -17.18286 -16.07897 -15.73725 -15.61055 -15.06233 -14.88818 -14.63992 -14.41116 -14.10929 -13.85389 -13.41252 -13.26054 -12.97933 -12.86487 -12.49404 -12.37353 -12.20640 -12.05330 -11.91363 -11.75549 -11.55586 -11.47557 -11.22564 -11.07119 -10.75172 -10.17791 -9.40742 -8.49135 -6.09036 1.14030 1.27750 1.29432 1.43957 1.84188 1.88168 2.40236 2.59637 2.96691 3.21129 3.33103 3.59459 3.70018 3.85143 4.01174 4.10223 4.20099 4.23883 4.28230 4.32687 4.36263 4.57595 4.64756 4.73790 4.81842 4.92143 4.93935 5.02375 5.07132 5.26706 5.47140 5.48296 5.48769 5.66512 5.85816 6.76347 6.83909 6.92767 7.38263 7.94035 8.59762 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.016251 B = 0.009810 C = 0.009310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.511918 B = 2853.404625 C = 3006.932780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.363 6.363 3 C 0.467 3.533 4 O -0.541 6.541 5 C -0.080 4.080 6 H 0.187 0.813 7 C -0.123 4.123 8 C -0.109 4.109 9 C -0.120 4.120 10 H 0.141 0.859 11 C 0.450 3.550 12 O -0.582 6.582 13 N -0.442 5.442 14 C -0.347 4.347 15 H 0.072 0.928 16 C 0.054 3.946 17 N -0.901 5.901 18 Si 0.947 3.053 19 H -0.281 1.281 20 H -0.309 1.309 21 H -0.255 1.255 22 C 0.041 3.959 23 C -0.172 4.172 24 C -0.181 4.181 25 H 0.026 0.974 26 H 0.071 0.929 27 H 0.131 0.869 28 H 0.110 0.890 29 H 0.050 0.950 30 H 0.151 0.849 31 H 0.046 0.954 32 H 0.269 0.731 33 H 0.157 0.843 34 H 0.071 0.929 35 H 0.130 0.870 36 H 0.136 0.864 37 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.905 -6.925 -13.397 19.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.279 6.279 3 C 0.311 3.689 4 O -0.430 6.430 5 C -0.099 4.099 6 H 0.204 0.796 7 C -0.161 4.161 8 C -0.147 4.147 9 C -0.142 4.142 10 H 0.159 0.841 11 C 0.241 3.759 12 O -0.466 6.466 13 N -0.162 5.162 14 C -0.473 4.473 15 H 0.089 0.911 16 C -0.151 4.151 17 N -0.538 5.538 18 Si 0.776 3.224 19 H -0.208 1.208 20 H -0.238 1.238 21 H -0.179 1.179 22 C -0.063 4.063 23 C -0.210 4.210 24 C -0.220 4.220 25 H 0.045 0.955 26 H 0.090 0.910 27 H 0.150 0.850 28 H 0.128 0.872 29 H 0.068 0.932 30 H 0.169 0.831 31 H 0.065 0.935 32 H 0.078 0.922 33 H 0.174 0.826 34 H 0.090 0.910 35 H 0.148 0.852 36 H 0.154 0.846 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 11.158 -6.107 -13.208 18.336 hybrid contribution -0.870 1.108 1.016 1.737 sum 10.287 -4.999 -12.191 16.717 Atomic orbital electron populations 1.23317 0.76097 1.05078 1.01137 1.86438 1.24026 1.33451 1.84008 1.24201 0.93178 0.80917 0.70566 1.90592 1.68057 1.37818 1.46497 1.22777 0.85086 1.00839 1.01211 0.79622 1.22900 0.97466 0.94756 1.00938 1.22924 0.97509 0.93635 1.00615 1.22580 0.97006 1.03860 0.90724 0.84119 1.20712 0.85937 0.84410 0.84829 1.90604 1.43446 1.34454 1.78128 1.43294 1.33775 1.20653 1.18471 1.18583 1.25150 0.94512 1.09080 0.91075 1.25789 0.96126 0.99849 0.93354 1.69926 1.22111 1.25168 1.36579 0.85840 0.80662 0.80726 0.75134 1.20779 1.23793 1.17854 1.22313 0.95483 0.91190 0.97281 1.23173 1.00939 0.95796 1.01072 1.23332 0.94442 1.02136 1.02077 0.95546 0.91018 0.85045 0.87200 0.93156 0.83104 0.93485 0.92173 0.82593 0.91005 0.85221 0.84606 0.91864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.22 10.56 113.37 1.20 2.42 16 2 O -0.36 -13.32 10.56 -51.38 -0.54 -13.86 16 3 C 0.47 18.29 5.35 71.24 0.38 18.67 16 4 O -0.54 -25.66 15.64 24.57 0.38 -25.27 16 5 C -0.08 -2.30 4.20 -11.01 -0.05 -2.34 16 6 H 0.19 3.03 8.14 -2.39 -0.02 3.01 16 7 C -0.12 -3.75 6.88 31.12 0.21 -3.53 16 8 C -0.11 -2.84 7.67 31.18 0.24 -2.60 16 9 C -0.12 -3.73 3.84 -10.95 -0.04 -3.77 16 10 H 0.14 3.10 5.81 -2.39 -0.01 3.09 16 11 C 0.45 20.86 4.67 87.66 0.41 21.27 16 12 O -0.58 -33.25 9.31 0.23 0.00 -33.25 16 13 N -0.44 -20.77 2.56 -613.13 -1.57 -22.34 16 14 C -0.35 -19.94 8.78 84.04 0.74 -19.20 16 15 H 0.07 4.34 6.82 -2.91 -0.02 4.32 16 16 C 0.05 3.34 4.60 84.92 0.39 3.73 16 17 N -0.90 -58.76 13.96 21.66 0.30 -58.46 16 18 Si 0.95 52.02 25.16 68.60 1.73 53.75 16 19 H -0.28 -16.63 6.32 99.48 0.63 -16.00 16 20 H -0.31 -16.68 7.11 99.48 0.71 -15.97 16 21 H -0.25 -12.72 7.11 99.48 0.71 -12.01 16 22 C 0.04 1.38 5.79 44.99 0.26 1.64 16 23 C -0.17 -5.35 9.80 30.62 0.30 -5.05 16 24 C -0.18 -5.34 10.37 30.62 0.32 -5.02 16 25 H 0.03 1.06 8.13 -2.39 -0.02 1.04 16 26 H 0.07 2.07 8.13 -2.39 -0.02 2.05 16 27 H 0.13 3.25 8.14 -2.39 -0.02 3.23 16 28 H 0.11 2.43 8.14 -2.38 -0.02 2.41 16 29 H 0.05 2.16 6.62 -2.39 -0.02 2.14 16 30 H 0.15 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.05 1.50 8.10 -2.39 -0.02 1.48 16 32 H 0.27 16.78 8.31 -92.71 -0.77 16.01 16 33 H 0.16 3.80 6.31 -2.39 -0.02 3.79 16 34 H 0.07 2.80 6.43 -2.39 -0.02 2.79 16 35 H 0.13 2.92 8.14 -2.39 -0.02 2.90 16 36 H 0.14 2.71 8.14 -2.39 -0.02 2.69 16 37 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 Total: -1.00 -87.53 301.89 5.66 -81.87 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: 1.00 Total: 11.37 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: 4.36 Total: 6.19 kcal Atomic # 7 Polarization: -79.53 SS G_CDS: -1.27 Total: -80.80 kcal Atomic # 8 Polarization: -72.22 SS G_CDS: -0.16 Total: -72.38 kcal Atomic # 14 Polarization: 52.02 SS G_CDS: 1.73 Total: 53.75 kcal Total: -87.53 5.66 -81.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285002473.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.022 kcal (2) G-P(sol) polarization free energy of solvation -87.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds