Wall clock time and date at job start Mon Mar 30 2020 00:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46504 * 109.46979 * 266.10826 * 3 2 1 5 5 C 1.37097 * 119.99475 * 82.19989 * 4 3 2 6 6 H 1.08001 * 119.99581 * 169.22593 * 5 4 3 7 7 C 1.38943 * 120.00614 * 349.22530 * 5 4 3 8 8 N 1.31417 * 119.99799 * 0.73786 * 7 5 4 9 9 Si 1.86803 * 120.00208 * 180.73794 * 7 5 4 10 10 H 1.48498 * 109.46948 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47355 * 120.00174 * 9 7 5 12 12 H 1.48499 * 109.47012 * 240.00032 * 9 7 5 13 13 C 1.34774 * 120.00284 * 262.20042 * 4 3 2 14 14 O 1.21290 * 120.00061 * 183.11326 * 13 4 3 15 15 C 1.50702 * 119.99550 * 2.83365 * 13 4 3 16 16 O 1.42903 * 109.54539 * 310.21684 * 15 13 4 17 17 C 1.42889 * 114.00174 * 302.96577 * 16 15 13 18 18 C 1.53176 * 109.54196 * 189.95409 * 15 13 4 19 19 C 1.53097 * 109.16357 * 297.11583 * 18 15 13 20 20 O 1.42909 * 109.41198 * 302.39041 * 19 18 15 21 21 C 1.42906 * 114.09637 * 61.15754 * 20 19 18 22 22 C 1.53089 * 109.41681 * 298.84048 * 21 20 19 23 23 H 4.40642 * 5.51427 * 179.97438 * 4 1 2 24 24 H 1.08997 * 109.47219 * 146.11178 * 3 2 1 25 25 H 1.09000 * 109.47069 * 26.11019 * 3 2 1 26 26 H 0.97003 * 119.99822 * 180.02562 * 8 7 5 27 27 H 1.09001 * 109.47376 * 175.13910 * 17 16 15 28 28 H 1.09002 * 109.47282 * 295.13729 * 17 16 15 29 29 H 1.09001 * 109.47402 * 55.13795 * 17 16 15 30 30 H 1.09001 * 109.52385 * 57.01761 * 18 15 13 31 31 H 1.09000 * 109.52281 * 177.20828 * 18 15 13 32 32 H 1.09001 * 109.48116 * 182.41043 * 19 18 15 33 33 H 1.09002 * 109.49068 * 62.37737 * 19 18 15 34 34 H 1.08996 * 109.47838 * 178.85544 * 21 20 19 35 35 H 1.09004 * 109.48569 * 58.83250 * 21 20 19 36 36 H 1.09005 * 109.52133 * 297.70482 * 22 21 20 37 37 H 1.09000 * 109.52289 * 177.51434 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1343 0.0946 1.3781 5 6 3.2113 -1.0315 2.1562 6 1 3.7287 -0.9988 3.1036 7 6 2.6236 -2.2148 1.7261 8 7 2.0065 -2.2584 0.5667 9 14 2.7109 -3.7437 2.7958 10 1 3.4560 -3.4338 4.0424 11 1 1.3357 -4.1877 3.1379 12 1 3.4108 -4.8253 2.0573 13 6 3.5077 1.2880 1.8809 14 8 3.9649 1.3575 3.0021 15 6 3.3630 2.5352 1.0474 16 8 3.9388 2.3179 -0.2423 17 6 5.3127 1.9270 -0.2070 18 6 4.0775 3.6999 1.7398 19 6 3.4029 3.9741 3.0865 20 8 2.0182 4.2573 2.8752 21 6 1.2887 3.1858 2.2736 22 6 1.8784 2.8799 0.8944 23 1 -1.0500 0.0002 -0.0001 24 1 3.0089 0.8539 -0.5730 25 1 3.0097 -0.9220 -0.4523 26 1 1.5959 -3.0844 0.2666 27 1 5.6515 1.6981 -1.2175 28 1 5.9118 2.7409 0.2013 29 1 5.4232 1.0436 0.4220 30 1 5.1236 3.4404 1.9027 31 1 4.0152 4.5896 1.1133 32 1 3.8801 4.8296 3.5646 33 1 3.5010 3.0979 3.7275 34 1 0.2429 3.4734 2.1662 35 1 1.3590 2.2992 2.9039 36 1 1.7717 3.7532 0.2508 37 1 1.3517 2.0340 0.4525 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000285002724.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:27 Heat of formation + Delta-G solvation = -32.739310 kcal Electronic energy + Delta-G solvation = -22487.455438 eV Core-core repulsion = 19233.498980 eV Total energy + Delta-G solvation = -3253.956457 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.50212 -37.64762 -36.78671 -35.35972 -32.38451 -31.66105 -31.31230 -30.55305 -26.74147 -26.45113 -25.30846 -23.61108 -23.07592 -21.26130 -18.56458 -17.92788 -17.12664 -16.62592 -16.00741 -15.66250 -15.10884 -14.92055 -14.79421 -14.22256 -14.03461 -13.61678 -13.54706 -12.93575 -12.85192 -12.31473 -12.18322 -11.87926 -11.70772 -11.28312 -11.23994 -11.14880 -10.90215 -10.50743 -10.44389 -10.34279 -10.11213 -9.70482 -9.40792 -9.24595 -9.03465 -8.56774 -8.19622 -7.91815 -6.28372 -3.95032 3.05497 3.19614 3.25410 3.48550 3.83379 4.02843 4.11333 4.20116 4.31531 4.79108 5.00305 5.08801 5.24899 5.40366 5.57624 5.64986 5.70165 5.70504 5.78477 5.83908 5.97803 6.04685 6.08916 6.13911 6.27460 6.39508 6.49157 6.57812 6.73881 7.07130 7.20529 7.35419 7.48175 7.61614 7.94324 8.36467 8.89883 9.04109 9.28826 9.79075 10.58725 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.021651 B = 0.008174 C = 0.007975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.948116 B = 3424.663201 C = 3510.244931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.293 4.293 2 C -0.081 4.081 3 C 0.192 3.808 4 N -0.423 5.423 5 C -0.307 4.307 6 H 0.106 0.894 7 C 0.030 3.970 8 N -0.870 5.870 9 Si 0.930 3.070 10 H -0.268 1.268 11 H -0.281 1.281 12 H -0.280 1.280 13 C 0.421 3.579 14 O -0.583 6.583 15 C 0.110 3.890 16 O -0.369 6.369 17 C 0.023 3.977 18 C -0.153 4.153 19 C 0.049 3.951 20 O -0.390 6.390 21 C 0.068 3.932 22 C -0.152 4.152 23 H 0.196 0.804 24 H 0.101 0.899 25 H 0.124 0.876 26 H 0.268 0.732 27 H 0.085 0.915 28 H 0.041 0.959 29 H 0.053 0.947 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.057 0.943 36 H 0.077 0.923 37 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.374 6.987 -2.875 7.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.312 4.312 2 C -0.083 4.083 3 C 0.070 3.930 4 N -0.140 5.140 5 C -0.435 4.435 6 H 0.124 0.876 7 C -0.173 4.173 8 N -0.509 5.509 9 Si 0.757 3.243 10 H -0.193 1.193 11 H -0.207 1.207 12 H -0.206 1.206 13 C 0.208 3.792 14 O -0.469 6.469 15 C 0.068 3.932 16 O -0.288 6.288 17 C -0.073 4.073 18 C -0.192 4.192 19 C -0.027 4.027 20 O -0.309 6.309 21 C -0.009 4.009 22 C -0.189 4.189 23 H 0.213 0.787 24 H 0.118 0.882 25 H 0.142 0.858 26 H 0.079 0.921 27 H 0.104 0.896 28 H 0.060 0.940 29 H 0.072 0.928 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.101 0.899 33 H 0.111 0.889 34 H 0.112 0.888 35 H 0.076 0.924 36 H 0.096 0.904 37 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 1.349 7.015 -2.556 7.587 hybrid contribution -0.071 -1.318 0.383 1.374 sum 1.278 5.698 -2.173 6.230 Atomic orbital electron populations 1.24215 0.95361 1.08878 1.02793 1.23150 0.94332 0.93189 0.97658 1.19527 0.84341 1.04745 0.84389 1.43813 1.53111 1.05882 1.11154 1.19888 1.33406 0.86580 1.03598 0.87634 1.25338 0.95573 0.99589 0.96760 1.70018 1.34771 1.27435 1.18701 0.85788 0.78085 0.80605 0.79819 1.19276 1.20656 1.20638 1.20304 0.86273 0.84470 0.88114 1.90425 1.50808 1.85092 1.20603 1.21736 0.94658 0.93665 0.83157 1.87813 1.25095 1.88237 1.27683 1.22804 0.82394 0.99492 1.02659 1.22433 1.00806 0.97603 0.98323 1.22940 0.80759 1.02844 0.96168 1.87802 1.21403 1.40119 1.81581 1.22469 0.95372 0.90851 0.92205 1.22438 0.93188 1.04011 0.99307 0.78685 0.88156 0.85823 0.92076 0.89609 0.93996 0.92848 0.90559 0.90976 0.89878 0.88853 0.88803 0.92424 0.90421 0.88093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -6.15 18.88 29.55 0.56 -5.59 16 2 C -0.08 -1.84 8.60 -37.12 -0.32 -2.16 16 3 C 0.19 4.35 4.60 -6.82 -0.03 4.32 16 4 N -0.42 -10.40 2.53 -117.93 -0.30 -10.70 16 5 C -0.31 -8.21 9.48 -14.94 -0.14 -8.35 16 6 H 0.11 2.97 7.20 -52.49 -0.38 2.59 16 7 C 0.03 0.76 5.37 -17.47 -0.09 0.67 16 8 N -0.87 -22.02 7.99 55.50 0.44 -21.58 16 9 Si 0.93 20.39 29.55 -169.99 -5.02 15.37 16 10 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 11 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 12 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 13 C 0.42 9.77 3.77 -10.99 -0.04 9.73 16 14 O -0.58 -14.93 13.18 5.55 0.07 -14.85 16 15 C 0.11 2.13 0.45 -91.59 -0.04 2.09 16 16 O -0.37 -6.69 7.33 -35.23 -0.26 -6.95 16 17 C 0.02 0.36 10.06 101.05 1.02 1.38 16 18 C -0.15 -2.66 4.38 -26.59 -0.12 -2.78 16 19 C 0.05 0.88 6.56 37.21 0.24 1.12 16 20 O -0.39 -7.19 10.77 -35.23 -0.38 -7.57 16 21 C 0.07 1.24 6.62 37.20 0.25 1.49 16 22 C -0.15 -2.79 5.10 -26.59 -0.14 -2.93 16 23 H 0.20 3.37 7.80 -54.09 -0.42 2.95 16 24 H 0.10 2.09 4.10 -52.37 -0.21 1.88 16 25 H 0.12 3.00 6.16 -51.93 -0.32 2.69 16 26 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 27 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.04 0.59 6.82 -51.93 -0.35 0.24 16 29 H 0.05 0.98 6.84 -51.93 -0.36 0.63 16 30 H 0.08 1.30 6.90 -51.93 -0.36 0.94 16 31 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.09 1.93 5.47 -51.93 -0.28 1.65 16 34 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 35 H 0.06 1.21 7.38 -51.93 -0.38 0.83 16 36 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 37 H 0.10 1.98 3.89 -51.93 -0.20 1.78 16 LS Contribution 288.10 15.07 4.34 4.34 Total: -1.00 -28.92 288.10 -4.48 -33.39 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: -4.52 Total: 9.55 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: 1.14 Total: -1.01 kcal Atomic # 7 Polarization: -32.42 SS G_CDS: 0.15 Total: -32.28 kcal Atomic # 8 Polarization: -28.80 SS G_CDS: -0.56 Total: -29.37 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -28.92 -4.48 -33.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285002724.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.652 kcal (2) G-P(sol) polarization free energy of solvation -28.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds