Wall clock time and date at job start Mon Mar 30 2020 00:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46504 * 109.46979 * 266.10826 * 3 2 1 5 5 C 1.37097 * 119.99475 * 82.19989 * 4 3 2 6 6 H 1.08001 * 119.99581 * 169.22593 * 5 4 3 7 7 C 1.38943 * 120.00614 * 349.22530 * 5 4 3 8 8 N 1.31417 * 119.99799 * 0.73786 * 7 5 4 9 9 Si 1.86803 * 120.00208 * 180.73794 * 7 5 4 10 10 H 1.48498 * 109.46948 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47355 * 120.00174 * 9 7 5 12 12 H 1.48499 * 109.47012 * 240.00032 * 9 7 5 13 13 C 1.34774 * 120.00284 * 262.20042 * 4 3 2 14 14 O 1.21290 * 120.00061 * 183.11326 * 13 4 3 15 15 C 1.50702 * 119.99550 * 2.83365 * 13 4 3 16 16 O 1.42903 * 109.54539 * 310.21684 * 15 13 4 17 17 C 1.42889 * 114.00174 * 302.96577 * 16 15 13 18 18 C 1.53176 * 109.54196 * 189.95409 * 15 13 4 19 19 C 1.53097 * 109.16357 * 297.11583 * 18 15 13 20 20 O 1.42909 * 109.41198 * 302.39041 * 19 18 15 21 21 C 1.42906 * 114.09637 * 61.15754 * 20 19 18 22 22 C 1.53089 * 109.41681 * 298.84048 * 21 20 19 23 23 H 4.40642 * 5.51427 * 179.97438 * 4 1 2 24 24 H 1.08997 * 109.47219 * 146.11178 * 3 2 1 25 25 H 1.09000 * 109.47069 * 26.11019 * 3 2 1 26 26 H 0.97003 * 119.99822 * 180.02562 * 8 7 5 27 27 H 1.09001 * 109.47376 * 175.13910 * 17 16 15 28 28 H 1.09002 * 109.47282 * 295.13729 * 17 16 15 29 29 H 1.09001 * 109.47402 * 55.13795 * 17 16 15 30 30 H 1.09001 * 109.52385 * 57.01761 * 18 15 13 31 31 H 1.09000 * 109.52281 * 177.20828 * 18 15 13 32 32 H 1.09001 * 109.48116 * 182.41043 * 19 18 15 33 33 H 1.09002 * 109.49068 * 62.37737 * 19 18 15 34 34 H 1.08996 * 109.47838 * 178.85544 * 21 20 19 35 35 H 1.09004 * 109.48569 * 58.83250 * 21 20 19 36 36 H 1.09005 * 109.52133 * 297.70482 * 22 21 20 37 37 H 1.09000 * 109.52289 * 177.51434 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1343 0.0946 1.3781 5 6 3.2113 -1.0315 2.1562 6 1 3.7287 -0.9988 3.1036 7 6 2.6236 -2.2148 1.7261 8 7 2.0065 -2.2584 0.5667 9 14 2.7109 -3.7437 2.7958 10 1 3.4560 -3.4338 4.0424 11 1 1.3357 -4.1877 3.1379 12 1 3.4108 -4.8253 2.0573 13 6 3.5077 1.2880 1.8809 14 8 3.9649 1.3575 3.0021 15 6 3.3630 2.5352 1.0474 16 8 3.9388 2.3179 -0.2423 17 6 5.3127 1.9270 -0.2070 18 6 4.0775 3.6999 1.7398 19 6 3.4029 3.9741 3.0865 20 8 2.0182 4.2573 2.8752 21 6 1.2887 3.1858 2.2736 22 6 1.8784 2.8799 0.8944 23 1 -1.0500 0.0002 -0.0001 24 1 3.0089 0.8539 -0.5730 25 1 3.0097 -0.9220 -0.4523 26 1 1.5959 -3.0844 0.2666 27 1 5.6515 1.6981 -1.2175 28 1 5.9118 2.7409 0.2013 29 1 5.4232 1.0436 0.4220 30 1 5.1236 3.4404 1.9027 31 1 4.0152 4.5896 1.1133 32 1 3.8801 4.8296 3.5646 33 1 3.5010 3.0979 3.7275 34 1 0.2429 3.4734 2.1662 35 1 1.3590 2.2992 2.9039 36 1 1.7717 3.7532 0.2508 37 1 1.3517 2.0340 0.4525 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000285002724.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:27 Heat of formation + Delta-G solvation = -51.625360 kcal Electronic energy + Delta-G solvation = -22488.274398 eV Core-core repulsion = 19233.498980 eV Total energy + Delta-G solvation = -3254.775418 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.10158 -39.23988 -38.33624 -37.21043 -34.07131 -33.34919 -33.04109 -32.01230 -28.42728 -27.95073 -27.05792 -25.20341 -24.52208 -22.89282 -20.22564 -19.73728 -18.65986 -18.39743 -17.58124 -17.16902 -16.84560 -16.46697 -16.33392 -15.82330 -15.67177 -15.24690 -15.17494 -14.48395 -14.37643 -13.96764 -13.92443 -13.36709 -13.20239 -13.03743 -12.90341 -12.64139 -12.45228 -12.35663 -12.17498 -11.93004 -11.58173 -11.40521 -11.07158 -10.89712 -10.57849 -10.29463 -10.02745 -9.73815 -8.20439 -5.95884 1.29054 1.37825 1.49874 1.75674 2.08563 2.32416 2.44849 2.59050 2.89350 3.08853 3.11534 3.61017 3.75417 3.93922 3.99213 4.11194 4.25622 4.36543 4.43279 4.47620 4.57207 4.67739 4.72856 4.80731 4.85309 4.96208 4.99745 5.04129 5.18095 5.25850 5.43989 5.52941 5.85103 6.06455 6.17258 6.44460 7.10278 7.20617 7.41194 7.92396 8.62793 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.021651 B = 0.008174 C = 0.007975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.948116 B = 3424.663201 C = 3510.244931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.275 4.275 2 C -0.122 4.122 3 C 0.202 3.798 4 N -0.435 5.435 5 C -0.342 4.342 6 H 0.078 0.922 7 C 0.002 3.998 8 N -0.874 5.874 9 Si 0.987 3.013 10 H -0.277 1.277 11 H -0.277 1.277 12 H -0.268 1.268 13 C 0.419 3.581 14 O -0.615 6.615 15 C 0.113 3.887 16 O -0.370 6.370 17 C 0.020 3.980 18 C -0.149 4.149 19 C 0.048 3.952 20 O -0.389 6.389 21 C 0.070 3.930 22 C -0.150 4.150 23 H 0.230 0.770 24 H 0.118 0.882 25 H 0.102 0.898 26 H 0.270 0.730 27 H 0.117 0.883 28 H 0.062 0.938 29 H 0.020 0.980 30 H 0.077 0.923 31 H 0.100 0.900 32 H 0.116 0.884 33 H 0.058 0.942 34 H 0.124 0.876 35 H 0.019 0.981 36 H 0.104 0.896 37 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.748 8.118 -3.977 9.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.294 4.294 2 C -0.123 4.123 3 C 0.080 3.920 4 N -0.152 5.152 5 C -0.470 4.470 6 H 0.096 0.904 7 C -0.200 4.200 8 N -0.513 5.513 9 Si 0.811 3.189 10 H -0.202 1.202 11 H -0.202 1.202 12 H -0.193 1.193 13 C 0.208 3.792 14 O -0.503 6.503 15 C 0.071 3.929 16 O -0.289 6.289 17 C -0.076 4.076 18 C -0.187 4.187 19 C -0.028 4.028 20 O -0.308 6.308 21 C -0.007 4.007 22 C -0.187 4.187 23 H 0.247 0.753 24 H 0.135 0.865 25 H 0.120 0.880 26 H 0.081 0.919 27 H 0.135 0.865 28 H 0.080 0.920 29 H 0.039 0.961 30 H 0.095 0.905 31 H 0.118 0.882 32 H 0.133 0.867 33 H 0.076 0.924 34 H 0.142 0.858 35 H 0.038 0.962 36 H 0.123 0.877 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 0.721 8.149 -3.689 8.974 hybrid contribution 0.133 -1.650 0.732 1.810 sum 0.854 6.500 -2.956 7.191 Atomic orbital electron populations 1.25041 0.96263 1.07083 1.01015 1.23360 0.94888 0.94801 0.99295 1.19394 0.84867 1.04321 0.83390 1.43951 1.53645 1.05857 1.11722 1.19758 1.35183 0.88463 1.03601 0.90439 1.25957 0.94911 1.01341 0.97828 1.70152 1.34235 1.27909 1.19001 0.84959 0.78007 0.77766 0.78119 1.20178 1.20232 1.19295 1.21118 0.84578 0.85394 0.88136 1.90408 1.51786 1.85864 1.22291 1.21687 0.95979 0.92036 0.83200 1.87783 1.26286 1.88072 1.26726 1.22981 0.81668 0.98830 1.04140 1.22442 1.00431 0.97631 0.98183 1.22947 0.80924 1.02772 0.96191 1.87806 1.21647 1.39744 1.81589 1.22487 0.97095 0.89611 0.91467 1.22446 0.92149 1.04591 0.99551 0.75348 0.86495 0.88019 0.91899 0.86467 0.91976 0.96101 0.90489 0.88164 0.86654 0.92413 0.85846 0.96245 0.87748 0.89241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -11.08 18.88 74.32 1.40 -9.68 16 2 C -0.12 -5.46 8.60 31.13 0.27 -5.19 16 3 C 0.20 9.25 4.60 84.57 0.39 9.64 16 4 N -0.44 -22.05 2.53 -645.41 -1.63 -23.68 16 5 C -0.34 -19.05 9.48 84.04 0.80 -18.25 16 6 H 0.08 4.63 7.20 -2.91 -0.02 4.61 16 7 C 0.00 0.08 5.37 84.92 0.46 0.54 16 8 N -0.87 -44.51 7.99 21.66 0.17 -44.34 16 9 Si 0.99 42.36 29.55 68.60 2.03 44.39 16 10 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 11 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 12 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 13 C 0.42 19.94 3.77 87.66 0.33 20.27 16 14 O -0.62 -32.90 13.18 -3.06 -0.04 -32.94 16 15 C 0.11 4.27 0.45 -11.42 -0.01 4.27 16 16 O -0.37 -12.78 7.33 -148.98 -1.09 -13.87 16 17 C 0.02 0.60 10.06 113.37 1.14 1.74 16 18 C -0.15 -4.87 4.38 30.69 0.13 -4.73 16 19 C 0.05 1.65 6.56 72.01 0.47 2.12 16 20 O -0.39 -13.65 10.77 -148.98 -1.60 -15.25 16 21 C 0.07 2.49 6.62 72.01 0.48 2.97 16 22 C -0.15 -5.25 5.10 30.68 0.16 -5.10 16 23 H 0.23 7.19 7.80 -4.42 -0.03 7.16 16 24 H 0.12 4.86 4.10 -9.36 -0.04 4.82 16 25 H 0.10 5.06 6.16 -2.39 -0.01 5.05 16 26 H 0.27 13.10 8.31 -92.71 -0.77 12.33 16 27 H 0.12 2.79 8.14 -2.39 -0.02 2.77 16 28 H 0.06 1.64 6.82 -2.39 -0.02 1.62 16 29 H 0.02 0.77 6.84 -2.39 -0.02 0.75 16 30 H 0.08 2.50 6.90 -2.39 -0.02 2.48 16 31 H 0.10 2.76 8.14 -2.39 -0.02 2.74 16 32 H 0.12 3.18 8.14 -2.39 -0.02 3.16 16 33 H 0.06 2.44 5.47 -2.39 -0.01 2.43 16 34 H 0.12 3.57 8.14 -2.39 -0.02 3.55 16 35 H 0.02 0.83 7.38 -2.38 -0.02 0.81 16 36 H 0.10 3.11 8.14 -2.38 -0.02 3.09 16 37 H 0.09 3.39 3.89 -2.39 -0.01 3.38 16 Total: -1.00 -63.86 288.10 4.91 -58.95 By element: Atomic # 1 Polarization: 27.11 SS G_CDS: 1.06 Total: 28.17 kcal Atomic # 6 Polarization: -7.44 SS G_CDS: 6.02 Total: -1.42 kcal Atomic # 7 Polarization: -66.56 SS G_CDS: -1.46 Total: -68.02 kcal Atomic # 8 Polarization: -59.33 SS G_CDS: -2.74 Total: -62.07 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.39 kcal Total: -63.86 4.91 -58.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285002724.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.323 kcal (2) G-P(sol) polarization free energy of solvation -63.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds