Wall clock time and date at job start Mon Mar 30 2020 00:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42904 * 114.00012 * 2 1 4 4 C 1.52998 * 109.47226 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.47516 * 174.99811 * 4 3 2 6 6 N 1.46506 * 109.47262 * 295.00149 * 4 3 2 7 7 C 1.34777 * 119.99873 * 275.00296 * 6 4 3 8 8 O 1.21284 * 119.99754 * 359.97438 * 7 6 4 9 9 C 1.50696 * 120.00137 * 179.97438 * 7 6 4 10 10 C 1.53002 * 109.47300 * 179.97438 * 9 7 6 11 11 C 1.50696 * 109.46919 * 179.97438 * 10 9 7 12 12 H 1.07999 * 120.00202 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99746 * 179.97438 * 11 10 9 14 14 N 1.31514 * 119.99981 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99781 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47237 * 60.00061 * 15 13 11 17 17 H 1.48503 * 109.46845 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47035 * 299.99817 * 15 13 11 19 19 C 1.50703 * 109.47302 * 54.99904 * 4 3 2 20 20 C 1.34514 * 125.78672 * 100.00035 * 19 4 3 21 21 C 1.41387 * 106.83556 * 180.02562 * 20 19 4 22 22 C 1.34510 * 106.84200 * 359.97438 * 21 20 19 23 23 O 1.34301 * 108.42201 * 359.73490 * 22 21 20 24 24 H 1.08998 * 109.47267 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47265 * 299.99621 * 1 2 3 26 26 H 1.09002 * 109.47304 * 59.99879 * 1 2 3 27 27 H 1.08996 * 109.46894 * 59.99925 * 3 2 1 28 28 H 1.08998 * 109.47064 * 299.99963 * 3 2 1 29 29 H 0.96995 * 120.00050 * 94.72411 * 6 4 3 30 30 H 1.09004 * 109.47043 * 299.99732 * 9 7 6 31 31 H 1.09000 * 109.46978 * 59.99653 * 9 7 6 32 32 H 1.09000 * 109.46497 * 299.99731 * 10 9 7 33 33 H 1.08987 * 109.47025 * 59.99846 * 10 9 7 34 34 H 0.96996 * 119.99730 * 179.97438 * 14 13 11 35 35 H 1.07990 * 126.58277 * 0.03303 * 20 19 4 36 36 H 1.08010 * 126.57529 * 179.97438 * 21 20 19 37 37 H 1.08004 * 125.78323 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.9785 2.1766 -0.0902 6 7 3.9767 0.5640 1.2509 7 6 4.1663 1.3222 2.3489 8 8 3.9720 2.5184 2.3008 9 6 4.6196 0.6837 3.6364 10 6 4.7574 1.7576 4.7175 11 6 5.2102 1.1189 6.0051 12 1 5.3828 0.0536 6.0481 13 6 5.4050 1.8947 7.1282 14 7 5.1953 3.1920 7.0758 15 14 5.9669 1.1031 8.7242 16 1 7.2795 0.4413 8.5132 17 1 6.1005 2.1454 9.7735 18 1 4.9669 0.0933 9.1548 19 6 3.9714 0.3328 -1.1648 20 6 4.4492 0.7878 -2.3371 21 6 4.7302 -0.3466 -3.1327 22 6 4.4079 -1.4269 -2.3989 23 8 3.9546 -1.0095 -1.2056 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.6886 1.8464 0.8900 28 1 1.6886 1.8464 -0.8900 29 1 4.1285 -0.3932 1.2903 30 1 3.8860 -0.0581 3.9521 31 1 5.5834 0.1986 3.4817 32 1 5.4913 2.4990 4.4015 33 1 3.7940 2.2430 4.8722 34 1 5.3320 3.7376 7.8660 35 1 4.5910 1.8212 -2.6167 36 1 5.1275 -0.3459 -4.1371 37 1 4.5025 -2.4556 -2.7141 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292139999.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:39 Heat of formation + Delta-G solvation = -75.383594 kcal Electronic energy + Delta-G solvation = -20075.217353 eV Core-core repulsion = 16819.411701 eV Total energy + Delta-G solvation = -3255.805652 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.66272 -39.39486 -37.80233 -34.91047 -33.42996 -33.08976 -31.41900 -30.33108 -28.37900 -26.39162 -25.53127 -23.42279 -21.97587 -21.46815 -20.27152 -19.60882 -17.83128 -16.86663 -16.51283 -16.39031 -15.93657 -15.58161 -15.36067 -15.12017 -14.57123 -14.40776 -13.60538 -13.09583 -12.94617 -12.90240 -12.67795 -12.59968 -12.26085 -12.03952 -11.92077 -11.36794 -11.14198 -10.89226 -10.60271 -10.01284 -9.93076 -9.79172 -9.65436 -9.20288 -9.04788 -8.90909 -8.55593 -8.29779 -5.94217 -3.98389 1.62314 2.48949 2.84418 3.21254 3.36288 3.40290 3.41744 3.47064 3.72661 4.43880 4.49489 4.88208 4.90967 5.00382 5.15632 5.25461 5.30022 5.32621 5.40732 5.49568 5.56126 5.67479 5.71531 5.81583 5.96753 6.25938 6.28202 6.34673 6.59906 6.91451 6.99527 7.10711 7.76103 7.86963 7.88231 8.08952 8.40596 8.73272 9.09788 9.64969 11.16735 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.026697 B = 0.003820 C = 0.003642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.563279 B = 7328.768916 C = 7685.395164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.380 6.380 3 C 0.048 3.952 4 C 0.233 3.767 5 H 0.127 0.873 6 N -0.732 5.732 7 C 0.514 3.486 8 O -0.537 6.537 9 C -0.129 4.129 10 C 0.038 3.962 11 C -0.527 4.527 12 H 0.055 0.945 13 C 0.058 3.942 14 N -0.890 5.890 15 Si 0.893 3.107 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.277 1.277 19 C -0.003 4.003 20 C -0.207 4.207 21 C -0.216 4.216 22 C -0.040 4.040 23 O -0.159 6.159 24 H 0.084 0.916 25 H 0.042 0.958 26 H 0.038 0.962 27 H 0.069 0.931 28 H 0.058 0.942 29 H 0.405 0.595 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.024 0.976 33 H 0.023 0.977 34 H 0.261 0.739 35 H 0.148 0.852 36 H 0.147 0.853 37 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.590 -8.429 -20.573 22.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.298 6.298 3 C -0.030 4.030 4 C 0.127 3.873 5 H 0.145 0.855 6 N -0.386 5.386 7 C 0.303 3.697 8 O -0.412 6.412 9 C -0.169 4.169 10 C 0.000 4.000 11 C -0.566 4.566 12 H 0.074 0.926 13 C -0.143 4.143 14 N -0.529 5.529 15 Si 0.721 3.279 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.203 1.203 19 C -0.054 4.054 20 C -0.226 4.226 21 C -0.235 4.235 22 C -0.108 4.108 23 O -0.054 6.054 24 H 0.103 0.897 25 H 0.061 0.939 26 H 0.056 0.944 27 H 0.087 0.913 28 H 0.077 0.923 29 H 0.240 0.760 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.042 0.958 33 H 0.042 0.958 34 H 0.071 0.929 35 H 0.166 0.834 36 H 0.164 0.836 37 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -5.706 -7.720 -20.229 22.392 hybrid contribution 0.205 -0.561 0.527 0.797 sum -5.502 -8.282 -19.702 22.069 Atomic orbital electron populations 1.22718 0.81226 1.02592 0.99880 1.87923 1.19453 1.27062 1.95405 1.23068 0.92820 0.85597 1.01489 1.19491 0.92440 0.95458 0.79893 0.85506 1.46197 1.70920 1.12079 1.09444 1.21641 0.75472 0.87303 0.85271 1.90663 1.50560 1.15311 1.84681 1.21874 1.01333 1.01871 0.91832 1.18896 0.98299 0.92401 0.90389 1.21196 1.46013 0.94108 0.95257 0.92633 1.25019 0.95570 0.94809 0.98943 1.69986 1.48859 1.04546 1.29512 0.86651 0.79215 0.78904 0.83146 1.20244 1.21303 1.20256 1.22271 1.04180 0.81179 0.97756 1.21567 1.06390 1.00445 0.94244 1.21783 1.07766 0.92114 1.01871 1.24040 1.02811 1.00078 0.83902 1.84042 1.65156 1.21764 1.34424 0.89741 0.93938 0.94387 0.91281 0.92345 0.76009 0.90062 0.90111 0.95785 0.95821 0.92918 0.83394 0.83557 0.78242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 101.05 1.11 1.44 16 2 O -0.38 -4.99 10.03 -35.23 -0.35 -5.34 16 3 C 0.05 0.62 5.73 37.16 0.21 0.83 16 4 C 0.23 3.15 2.83 -69.08 -0.20 2.95 16 5 H 0.13 1.73 7.57 -51.93 -0.39 1.34 16 6 N -0.73 -11.13 5.01 -54.93 -0.28 -11.40 16 7 C 0.51 9.94 7.79 -10.99 -0.09 9.85 16 8 O -0.54 -12.26 15.64 5.55 0.09 -12.17 16 9 C -0.13 -2.67 5.64 -27.88 -0.16 -2.82 16 10 C 0.04 1.02 4.26 -27.88 -0.12 0.90 16 11 C -0.53 -15.07 9.11 -34.44 -0.31 -15.39 16 12 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 13 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 14 N -0.89 -27.52 13.29 55.43 0.74 -26.78 16 15 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 16 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 C 0.00 -0.03 5.67 -35.62 -0.20 -0.23 16 20 C -0.21 -2.31 10.80 -39.70 -0.43 -2.74 16 21 C -0.22 -2.12 10.91 -39.70 -0.43 -2.56 16 22 C -0.04 -0.39 12.09 29.41 0.36 -0.03 16 23 O -0.16 -1.98 10.19 5.72 0.06 -1.92 16 24 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 25 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.41 5.55 8.31 -40.82 -0.34 5.21 16 30 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 31 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 32 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 33 H 0.02 0.69 8.10 -51.94 -0.42 0.27 16 34 H 0.26 7.59 8.31 -40.82 -0.34 7.26 16 35 H 0.15 1.39 8.06 -52.49 -0.42 0.97 16 36 H 0.15 1.08 8.06 -52.48 -0.42 0.66 16 37 H 0.20 1.17 8.06 -52.48 -0.42 0.74 16 LS Contribution 325.63 15.07 4.91 4.91 Total: -1.00 -34.49 325.63 -5.56 -40.04 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -5.34 Total: 2.09 kcal Atomic # 6 Polarization: -5.84 SS G_CDS: -0.35 Total: -6.20 kcal Atomic # 7 Polarization: -38.65 SS G_CDS: 0.46 Total: -38.19 kcal Atomic # 8 Polarization: -19.22 SS G_CDS: -0.21 Total: -19.43 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -34.49 -5.56 -40.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292139999.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.340 kcal (2) G-P(sol) polarization free energy of solvation -34.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds