Wall clock time and date at job start Mon Mar 30 2020 00:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42904 * 114.00012 * 2 1 4 4 C 1.52998 * 109.47226 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.47516 * 174.99811 * 4 3 2 6 6 N 1.46506 * 109.47262 * 295.00149 * 4 3 2 7 7 C 1.34777 * 119.99873 * 275.00296 * 6 4 3 8 8 O 1.21284 * 119.99754 * 359.97438 * 7 6 4 9 9 C 1.50696 * 120.00137 * 179.97438 * 7 6 4 10 10 C 1.53002 * 109.47300 * 179.97438 * 9 7 6 11 11 C 1.50696 * 109.46919 * 179.97438 * 10 9 7 12 12 H 1.07999 * 120.00202 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99746 * 179.97438 * 11 10 9 14 14 N 1.31514 * 119.99981 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99781 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47237 * 60.00061 * 15 13 11 17 17 H 1.48503 * 109.46845 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47035 * 299.99817 * 15 13 11 19 19 C 1.50703 * 109.47302 * 54.99904 * 4 3 2 20 20 C 1.34514 * 125.78672 * 100.00035 * 19 4 3 21 21 C 1.41387 * 106.83556 * 180.02562 * 20 19 4 22 22 C 1.34510 * 106.84200 * 359.97438 * 21 20 19 23 23 O 1.34301 * 108.42201 * 359.73490 * 22 21 20 24 24 H 1.08998 * 109.47267 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47265 * 299.99621 * 1 2 3 26 26 H 1.09002 * 109.47304 * 59.99879 * 1 2 3 27 27 H 1.08996 * 109.46894 * 59.99925 * 3 2 1 28 28 H 1.08998 * 109.47064 * 299.99963 * 3 2 1 29 29 H 0.96995 * 120.00050 * 94.72411 * 6 4 3 30 30 H 1.09004 * 109.47043 * 299.99732 * 9 7 6 31 31 H 1.09000 * 109.46978 * 59.99653 * 9 7 6 32 32 H 1.09000 * 109.46497 * 299.99731 * 10 9 7 33 33 H 1.08987 * 109.47025 * 59.99846 * 10 9 7 34 34 H 0.96996 * 119.99730 * 179.97438 * 14 13 11 35 35 H 1.07990 * 126.58277 * 0.03303 * 20 19 4 36 36 H 1.08010 * 126.57529 * 179.97438 * 21 20 19 37 37 H 1.08004 * 125.78323 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.9785 2.1766 -0.0902 6 7 3.9767 0.5640 1.2509 7 6 4.1663 1.3222 2.3489 8 8 3.9720 2.5184 2.3008 9 6 4.6196 0.6837 3.6364 10 6 4.7574 1.7576 4.7175 11 6 5.2102 1.1189 6.0051 12 1 5.3828 0.0536 6.0481 13 6 5.4050 1.8947 7.1282 14 7 5.1953 3.1920 7.0758 15 14 5.9669 1.1031 8.7242 16 1 7.2795 0.4413 8.5132 17 1 6.1005 2.1454 9.7735 18 1 4.9669 0.0933 9.1548 19 6 3.9714 0.3328 -1.1648 20 6 4.4492 0.7878 -2.3371 21 6 4.7302 -0.3466 -3.1327 22 6 4.4079 -1.4269 -2.3989 23 8 3.9546 -1.0095 -1.2056 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.6886 1.8464 0.8900 28 1 1.6886 1.8464 -0.8900 29 1 4.1285 -0.3932 1.2903 30 1 3.8860 -0.0581 3.9521 31 1 5.5834 0.1986 3.4817 32 1 5.4913 2.4990 4.4015 33 1 3.7940 2.2430 4.8722 34 1 5.3320 3.7376 7.8660 35 1 4.5910 1.8212 -2.6167 36 1 5.1275 -0.3459 -4.1371 37 1 4.5025 -2.4556 -2.7141 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292139999.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:38 Heat of formation + Delta-G solvation = -100.051248 kcal Electronic energy + Delta-G solvation = -20076.287023 eV Core-core repulsion = 16819.411701 eV Total energy + Delta-G solvation = -3256.875322 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.49528 -40.85280 -38.87647 -36.19812 -35.52092 -33.94587 -33.17130 -31.74285 -29.27327 -27.82535 -26.94685 -24.70100 -23.30460 -22.68469 -21.23204 -21.11573 -19.02930 -18.53602 -17.72990 -17.34891 -17.20120 -16.89492 -16.56335 -16.37588 -16.21123 -15.83333 -15.01588 -14.38991 -14.26998 -14.03143 -13.80779 -13.68915 -13.42288 -13.29663 -13.23931 -13.02385 -12.76852 -12.49882 -12.25353 -11.90942 -11.64007 -11.31740 -10.89986 -10.79860 -10.64750 -10.55165 -10.23699 -9.40126 -8.16916 -6.30736 0.77676 1.42866 1.47308 1.54983 1.63347 1.70521 2.02426 2.21253 2.45179 2.75851 3.15987 3.56395 3.89182 3.99250 4.16484 4.23811 4.27020 4.39093 4.44016 4.50893 4.53003 4.55281 4.56656 4.81586 4.90059 5.01545 5.07487 5.17964 5.31025 5.50958 5.63136 5.64525 5.86216 6.09780 6.19009 6.25443 6.50776 6.86862 7.24705 7.39218 8.95472 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.026697 B = 0.003820 C = 0.003642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.563279 B = 7328.768916 C = 7685.395164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.396 6.396 3 C 0.053 3.947 4 C 0.231 3.769 5 H 0.121 0.879 6 N -0.712 5.712 7 C 0.518 3.482 8 O -0.580 6.580 9 C -0.119 4.119 10 C 0.044 3.956 11 C -0.546 4.546 12 H 0.074 0.926 13 C -0.005 4.005 14 N -0.936 5.936 15 Si 0.973 3.027 16 H -0.263 1.263 17 H -0.287 1.287 18 H -0.263 1.263 19 C -0.027 4.027 20 C -0.207 4.207 21 C -0.226 4.226 22 C -0.036 4.036 23 O -0.176 6.176 24 H 0.099 0.901 25 H 0.038 0.962 26 H 0.053 0.947 27 H 0.047 0.953 28 H 0.080 0.920 29 H 0.415 0.585 30 H 0.102 0.898 31 H 0.103 0.897 32 H -0.015 1.015 33 H -0.015 1.015 34 H 0.263 0.737 35 H 0.160 0.840 36 H 0.171 0.829 37 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.285 -10.982 -21.600 24.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.315 6.315 3 C -0.025 4.025 4 C 0.126 3.874 5 H 0.138 0.862 6 N -0.365 5.365 7 C 0.307 3.693 8 O -0.460 6.460 9 C -0.159 4.159 10 C 0.006 3.994 11 C -0.583 4.583 12 H 0.092 0.908 13 C -0.203 4.203 14 N -0.576 5.576 15 Si 0.797 3.203 16 H -0.188 1.188 17 H -0.212 1.212 18 H -0.188 1.188 19 C -0.078 4.078 20 C -0.226 4.226 21 C -0.245 4.245 22 C -0.103 4.103 23 O -0.072 6.072 24 H 0.118 0.882 25 H 0.057 0.943 26 H 0.072 0.928 27 H 0.065 0.935 28 H 0.098 0.902 29 H 0.252 0.748 30 H 0.120 0.880 31 H 0.121 0.879 32 H 0.004 0.996 33 H 0.003 0.997 34 H 0.072 0.928 35 H 0.177 0.823 36 H 0.188 0.812 37 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -5.410 -10.326 -21.299 24.281 hybrid contribution 0.079 0.204 0.718 0.750 sum -5.330 -10.122 -20.581 23.547 Atomic orbital electron populations 1.22901 0.79739 1.03825 1.00472 1.87889 1.21121 1.26961 1.95507 1.22969 0.92319 0.85746 1.01453 1.19531 0.93023 0.95490 0.79324 0.86168 1.45926 1.69256 1.12225 1.09104 1.21304 0.75320 0.86714 0.85922 1.90651 1.52797 1.17112 1.85395 1.21640 1.03326 1.00130 0.90817 1.18678 0.94912 0.93227 0.92576 1.21685 1.45689 0.95097 0.95866 0.90793 1.26109 0.95471 0.95267 1.03404 1.70163 1.50159 1.06510 1.30800 0.85389 0.79346 0.77955 0.77644 1.18751 1.21238 1.18786 1.21999 1.06467 0.81506 0.97791 1.21891 1.05105 1.01663 0.93968 1.22133 1.07920 0.91501 1.02946 1.24852 1.00963 1.01775 0.82705 1.84020 1.65769 1.21557 1.35844 0.88220 0.94336 0.92816 0.93496 0.90160 0.74840 0.88017 0.87891 0.99627 0.99701 0.92834 0.82252 0.81163 0.74681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 11.01 113.37 1.25 1.75 16 2 O -0.40 -10.01 10.03 -148.98 -1.49 -11.51 16 3 C 0.05 1.35 5.73 71.98 0.41 1.76 16 4 C 0.23 6.22 2.83 44.24 0.13 6.35 16 5 H 0.12 3.37 7.57 -2.39 -0.02 3.36 16 6 N -0.71 -21.48 5.01 -446.09 -2.24 -23.72 16 7 C 0.52 20.46 7.79 87.66 0.68 21.14 16 8 O -0.58 -27.81 15.64 -3.04 -0.05 -27.86 16 9 C -0.12 -4.94 5.64 29.85 0.17 -4.77 16 10 C 0.04 2.46 4.26 29.85 0.13 2.58 16 11 C -0.55 -31.41 9.11 25.60 0.23 -31.18 16 12 H 0.07 3.89 7.74 -2.91 -0.02 3.87 16 13 C 0.00 -0.29 5.46 84.66 0.46 0.17 16 14 N -0.94 -59.58 13.29 21.45 0.28 -59.29 16 15 Si 0.97 44.59 29.54 68.60 2.03 46.62 16 16 H -0.26 -11.39 7.11 99.48 0.71 -10.69 16 17 H -0.29 -13.00 7.11 99.48 0.71 -12.30 16 18 H -0.26 -11.41 7.11 99.48 0.71 -10.71 16 19 C -0.03 -0.64 5.67 24.83 0.14 -0.50 16 20 C -0.21 -4.26 10.80 22.19 0.24 -4.02 16 21 C -0.23 -3.81 10.91 22.19 0.24 -3.57 16 22 C -0.04 -0.58 12.09 66.97 0.81 0.23 16 23 O -0.18 -4.04 10.19 -2.46 -0.03 -4.07 16 24 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 25 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.42 10.92 8.31 -92.71 -0.77 10.14 16 30 H 0.10 3.78 8.14 -2.38 -0.02 3.76 16 31 H 0.10 3.79 8.14 -2.39 -0.02 3.77 16 32 H -0.01 -0.93 8.10 -2.39 -0.02 -0.95 16 33 H -0.02 -0.97 8.10 -2.39 -0.02 -0.99 16 34 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 35 H 0.16 2.76 8.06 -2.92 -0.02 2.74 16 36 H 0.17 1.94 8.06 -2.91 -0.02 1.92 16 37 H 0.24 1.81 8.06 -2.91 -0.02 1.79 16 Total: -1.00 -76.87 325.63 3.69 -73.17 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: 0.29 Total: 16.71 kcal Atomic # 6 Polarization: -14.95 SS G_CDS: 4.89 Total: -10.06 kcal Atomic # 7 Polarization: -81.06 SS G_CDS: -1.95 Total: -83.01 kcal Atomic # 8 Polarization: -41.87 SS G_CDS: -1.57 Total: -43.44 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -76.87 3.69 -73.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292139999.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.877 kcal (2) G-P(sol) polarization free energy of solvation -76.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds