Wall clock time and date at job start Mon Mar 30 2020 00:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50696 * 119.99910 * 2 1 4 4 N 1.46504 * 109.47337 * 124.99830 * 3 2 1 5 5 C 1.46504 * 119.99989 * 269.99841 * 4 3 2 6 6 C 1.50695 * 109.47303 * 269.99993 * 5 4 3 7 7 H 1.08004 * 119.99892 * 359.97438 * 6 5 4 8 8 C 1.37872 * 119.99882 * 180.02562 * 6 5 4 9 9 N 1.31519 * 119.99747 * 179.97438 * 8 6 5 10 10 Si 1.86796 * 120.00130 * 0.02562 * 8 6 5 11 11 H 1.48505 * 109.47503 * 90.00113 * 10 8 6 12 12 H 1.48504 * 109.47080 * 209.99947 * 10 8 6 13 13 H 1.48494 * 109.47110 * 329.99577 * 10 8 6 14 14 C 1.34777 * 119.99901 * 89.99699 * 4 3 2 15 15 O 1.21284 * 119.99666 * 180.02562 * 14 4 3 16 16 C 1.50697 * 120.00030 * 0.02562 * 14 4 3 17 17 H 1.08990 * 115.56356 * 325.69207 * 16 14 4 18 18 C 1.53000 * 117.49504 * 111.38036 * 16 14 4 19 19 C 1.52997 * 60.00347 * 107.48912 * 18 16 14 20 20 H 1.08999 * 117.49685 * 252.51237 * 19 18 16 21 21 C 1.50696 * 117.52180 * 107.47447 * 19 18 16 22 22 O 1.20822 * 120.00705 * 291.38195 * 21 19 18 23 23 O 1.34238 * 119.99733 * 111.36996 * 21 19 18 24 24 C 1.45196 * 116.99712 * 180.02562 * 23 21 19 25 25 H 1.08001 * 119.99998 * 0.02562 * 1 2 3 26 26 H 1.08001 * 119.99825 * 179.97438 * 1 2 3 27 27 H 1.08001 * 119.99998 * 179.97438 * 2 1 3 28 28 H 1.08994 * 109.47436 * 4.99836 * 3 2 1 29 29 H 1.09005 * 109.47341 * 244.99488 * 3 2 1 30 30 H 1.09006 * 109.47120 * 30.00093 * 5 4 3 31 31 H 1.08996 * 109.46788 * 149.99578 * 5 4 3 32 32 H 0.97003 * 120.00070 * 180.02562 * 9 8 6 33 33 H 1.09002 * 117.49696 * 214.98125 * 18 16 14 34 34 H 1.09002 * 117.50343 * 0.02562 * 18 16 14 35 35 H 1.09001 * 109.46607 * 180.02562 * 24 23 21 36 36 H 1.08999 * 109.47205 * 299.99982 * 24 23 21 37 37 H 1.08997 * 109.47397 * 60.00468 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9937 1.3320 1.1315 5 6 2.5588 1.8651 2.4249 6 6 2.8441 3.3437 2.4804 7 1 3.3039 3.8370 1.6367 8 6 2.5192 4.0666 3.6085 9 7 2.7687 5.3570 3.6572 10 14 1.7259 3.2130 5.0685 11 1 2.7827 2.7228 5.9895 12 1 0.8495 4.1729 5.7868 13 1 0.9148 2.0649 4.5898 14 6 4.2497 0.8662 0.9825 15 8 5.0196 0.8880 1.9193 16 6 4.6972 0.3183 -0.3481 17 1 3.9327 -0.2046 -0.9226 18 6 5.7411 1.1207 -1.1274 19 6 6.1347 -0.1951 -0.4533 20 1 6.7566 -0.1367 0.4400 21 6 6.3849 -1.3856 -1.3428 22 8 5.4675 -1.8972 -1.9399 23 8 7.6272 -1.8776 -1.4719 24 6 7.7941 -3.0252 -2.3456 25 1 -0.5400 0.9353 -0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3586 2.1316 0.0895 29 1 2.6213 1.4026 -0.9314 30 1 1.4886 1.6967 2.5460 31 1 3.0988 1.3604 3.2260 32 1 2.5405 5.8656 4.4510 33 1 5.6634 1.1257 -2.2146 34 1 6.1046 2.0447 -0.6775 35 1 8.8430 -3.3214 -2.3597 36 1 7.1880 -3.8531 -1.9779 37 1 7.4768 -2.7627 -3.3548 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292566151.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:17 Heat of formation + Delta-G solvation = -66.550500 kcal Electronic energy + Delta-G solvation = -20248.159229 eV Core-core repulsion = 16992.736609 eV Total energy + Delta-G solvation = -3255.422620 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.80288 -39.43448 -37.04306 -36.04531 -35.42745 -33.17519 -32.12142 -28.77892 -28.22780 -25.74859 -24.92831 -23.86326 -21.78010 -20.51738 -19.91914 -18.60915 -17.85269 -17.03115 -16.91208 -16.47814 -16.15852 -15.66761 -14.78444 -14.50289 -14.18937 -14.02420 -13.61491 -13.29937 -13.02729 -12.66749 -12.43652 -12.15617 -12.09761 -11.70756 -11.64718 -11.24300 -10.99659 -10.96684 -10.80192 -10.63723 -10.54254 -10.50732 -10.14530 -9.57916 -9.25644 -9.14040 -8.59973 -7.80211 -6.10139 -4.09137 1.93381 2.35047 2.46628 2.98815 3.29097 3.35134 3.37344 3.71953 3.95553 4.38896 4.53460 4.66801 4.76731 4.88411 4.95466 4.98616 5.12048 5.22884 5.29270 5.29931 5.37401 5.54742 5.63301 5.90489 5.92441 5.97164 6.14568 6.19131 6.68023 6.74689 6.85758 6.92285 7.30589 7.58916 7.60700 8.16555 8.44252 8.85416 8.93805 9.50090 11.03064 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.023152 B = 0.004868 C = 0.004364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.087668 B = 5750.994054 C = 6414.514867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.170 4.170 3 C 0.135 3.865 4 N -0.581 5.581 5 C 0.217 3.783 6 C -0.530 4.530 7 H 0.076 0.924 8 C 0.074 3.926 9 N -0.897 5.897 10 Si 0.875 3.125 11 H -0.273 1.273 12 H -0.285 1.285 13 H -0.265 1.265 14 C 0.538 3.462 15 O -0.536 6.536 16 C -0.151 4.151 17 H 0.135 0.865 18 C -0.115 4.115 19 C -0.145 4.145 20 H 0.150 0.850 21 C 0.497 3.503 22 O -0.508 6.508 23 O -0.353 6.353 24 C 0.035 3.965 25 H 0.100 0.900 26 H 0.094 0.906 27 H 0.106 0.894 28 H 0.091 0.909 29 H 0.080 0.920 30 H 0.032 0.968 31 H 0.037 0.963 32 H 0.265 0.735 33 H 0.109 0.891 34 H 0.120 0.880 35 H 0.101 0.899 36 H 0.063 0.937 37 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.643 -13.369 -12.563 18.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.189 4.189 3 C 0.012 3.988 4 N -0.311 5.311 5 C 0.097 3.903 6 C -0.568 4.568 7 H 0.094 0.906 8 C -0.129 4.129 9 N -0.535 5.535 10 Si 0.701 3.299 11 H -0.199 1.199 12 H -0.210 1.210 13 H -0.190 1.190 14 C 0.324 3.676 15 O -0.413 6.413 16 C -0.173 4.173 17 H 0.153 0.847 18 C -0.153 4.153 19 C -0.165 4.165 20 H 0.168 0.832 21 C 0.340 3.660 22 O -0.396 6.396 23 O -0.269 6.269 24 C -0.059 4.059 25 H 0.118 0.882 26 H 0.113 0.887 27 H 0.124 0.876 28 H 0.109 0.891 29 H 0.099 0.901 30 H 0.050 0.950 31 H 0.055 0.945 32 H 0.075 0.925 33 H 0.128 0.872 34 H 0.139 0.861 35 H 0.120 0.880 36 H 0.081 0.919 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.762 -13.350 -12.112 18.415 hybrid contribution -0.523 -0.591 0.668 1.034 sum 3.240 -13.941 -11.444 18.325 Atomic orbital electron populations 1.23838 0.95824 1.01825 1.00551 1.23472 0.96467 0.99120 0.99890 1.20646 0.93063 0.95392 0.89716 1.47777 1.10339 1.59827 1.13129 1.19696 0.95046 0.95204 0.80386 1.21316 1.41282 0.91049 1.03158 0.90634 1.24835 0.95234 0.94714 0.98106 1.69895 1.47740 1.06600 1.29276 0.86873 0.79909 0.79710 0.83369 1.19881 1.21042 1.19011 1.19224 0.82369 0.78254 0.87777 1.90682 1.52676 1.56545 1.41410 1.22478 0.92218 1.03812 0.98755 0.84696 1.23084 0.98679 0.93840 0.99688 1.21677 1.00455 0.92418 1.01902 0.83248 1.22636 0.80502 0.83466 0.79378 1.90652 1.44428 1.59325 1.45209 1.86512 1.31513 1.45884 1.63001 1.23282 1.03117 0.86183 0.93275 0.88192 0.88731 0.87597 0.89066 0.90138 0.95018 0.94510 0.92540 0.87235 0.86125 0.88025 0.91861 0.91872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.30 14.32 29.01 0.42 -1.88 16 2 C -0.17 -2.39 9.54 -36.03 -0.34 -2.73 16 3 C 0.14 2.16 5.49 -5.19 -0.03 2.13 16 4 N -0.58 -11.86 2.44 -176.43 -0.43 -12.29 16 5 C 0.22 5.28 4.23 -5.19 -0.02 5.26 16 6 C -0.53 -15.00 9.94 -34.44 -0.34 -15.34 16 7 H 0.08 2.33 8.06 -52.48 -0.42 1.90 16 8 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 9 N -0.90 -27.37 13.96 55.43 0.77 -26.60 16 10 Si 0.87 21.49 27.47 -169.99 -4.67 16.82 16 11 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 13 H -0.27 -6.17 6.54 56.52 0.37 -5.80 16 14 C 0.54 10.82 7.45 -10.99 -0.08 10.74 16 15 O -0.54 -12.86 15.84 5.55 0.09 -12.77 16 16 C -0.15 -2.30 4.31 -91.77 -0.40 -2.69 16 17 H 0.14 1.89 6.50 -51.93 -0.34 1.56 16 18 C -0.12 -1.46 9.94 -26.73 -0.27 -1.73 16 19 C -0.15 -2.02 5.81 -91.77 -0.53 -2.55 16 20 H 0.15 2.17 7.67 -51.93 -0.40 1.77 16 21 C 0.50 6.71 7.74 36.00 0.28 6.99 16 22 O -0.51 -7.74 16.01 -18.75 -0.30 -8.04 16 23 O -0.35 -4.19 10.57 -39.28 -0.42 -4.61 16 24 C 0.04 0.29 10.56 101.05 1.07 1.36 16 25 H 0.10 1.22 7.84 -52.49 -0.41 0.80 16 26 H 0.09 1.03 8.06 -52.49 -0.42 0.61 16 27 H 0.11 1.45 8.03 -52.49 -0.42 1.03 16 28 H 0.09 1.50 7.72 -51.93 -0.40 1.10 16 29 H 0.08 1.10 6.64 -51.93 -0.34 0.75 16 30 H 0.03 0.74 7.13 -51.93 -0.37 0.37 16 31 H 0.04 0.96 6.85 -51.93 -0.36 0.60 16 32 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 33 H 0.11 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.12 1.58 8.14 -51.93 -0.42 1.16 16 35 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 37 H 0.06 0.49 8.13 -51.93 -0.42 0.07 16 LS Contribution 325.33 15.07 4.90 4.90 Total: -1.00 -34.20 325.33 -5.57 -39.77 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: -5.17 Total: 1.24 kcal Atomic # 6 Polarization: 1.92 SS G_CDS: -0.35 Total: 1.57 kcal Atomic # 7 Polarization: -39.23 SS G_CDS: 0.34 Total: -38.89 kcal Atomic # 8 Polarization: -24.79 SS G_CDS: -0.63 Total: -25.41 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.67 Total: 16.82 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -34.20 -5.57 -39.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292566151.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.785 kcal (2) G-P(sol) polarization free energy of solvation -34.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds