Wall clock time and date at job start Mon Mar 30 2020 00:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50696 * 119.99910 * 2 1 4 4 N 1.46504 * 109.47337 * 124.99830 * 3 2 1 5 5 C 1.46504 * 119.99989 * 269.99841 * 4 3 2 6 6 C 1.50695 * 109.47303 * 269.99993 * 5 4 3 7 7 H 1.08004 * 119.99892 * 359.97438 * 6 5 4 8 8 C 1.37872 * 119.99882 * 180.02562 * 6 5 4 9 9 N 1.31519 * 119.99747 * 179.97438 * 8 6 5 10 10 Si 1.86796 * 120.00130 * 0.02562 * 8 6 5 11 11 H 1.48505 * 109.47503 * 90.00113 * 10 8 6 12 12 H 1.48504 * 109.47080 * 209.99947 * 10 8 6 13 13 H 1.48494 * 109.47110 * 329.99577 * 10 8 6 14 14 C 1.34777 * 119.99901 * 89.99699 * 4 3 2 15 15 O 1.21284 * 119.99666 * 180.02562 * 14 4 3 16 16 C 1.50697 * 120.00030 * 0.02562 * 14 4 3 17 17 H 1.08990 * 115.56356 * 325.69207 * 16 14 4 18 18 C 1.53000 * 117.49504 * 111.38036 * 16 14 4 19 19 C 1.52997 * 60.00347 * 107.48912 * 18 16 14 20 20 H 1.08999 * 117.49685 * 252.51237 * 19 18 16 21 21 C 1.50696 * 117.52180 * 107.47447 * 19 18 16 22 22 O 1.20822 * 120.00705 * 291.38195 * 21 19 18 23 23 O 1.34238 * 119.99733 * 111.36996 * 21 19 18 24 24 C 1.45196 * 116.99712 * 180.02562 * 23 21 19 25 25 H 1.08001 * 119.99998 * 0.02562 * 1 2 3 26 26 H 1.08001 * 119.99825 * 179.97438 * 1 2 3 27 27 H 1.08001 * 119.99998 * 179.97438 * 2 1 3 28 28 H 1.08994 * 109.47436 * 4.99836 * 3 2 1 29 29 H 1.09005 * 109.47341 * 244.99488 * 3 2 1 30 30 H 1.09006 * 109.47120 * 30.00093 * 5 4 3 31 31 H 1.08996 * 109.46788 * 149.99578 * 5 4 3 32 32 H 0.97003 * 120.00070 * 180.02562 * 9 8 6 33 33 H 1.09002 * 117.49696 * 214.98125 * 18 16 14 34 34 H 1.09002 * 117.50343 * 0.02562 * 18 16 14 35 35 H 1.09001 * 109.46607 * 180.02562 * 24 23 21 36 36 H 1.08999 * 109.47205 * 299.99982 * 24 23 21 37 37 H 1.08997 * 109.47397 * 60.00468 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9937 1.3320 1.1315 5 6 2.5588 1.8651 2.4249 6 6 2.8441 3.3437 2.4804 7 1 3.3039 3.8370 1.6367 8 6 2.5192 4.0666 3.6085 9 7 2.7687 5.3570 3.6572 10 14 1.7259 3.2130 5.0685 11 1 2.7827 2.7228 5.9895 12 1 0.8495 4.1729 5.7868 13 1 0.9148 2.0649 4.5898 14 6 4.2497 0.8662 0.9825 15 8 5.0196 0.8880 1.9193 16 6 4.6972 0.3183 -0.3481 17 1 3.9327 -0.2046 -0.9226 18 6 5.7411 1.1207 -1.1274 19 6 6.1347 -0.1951 -0.4533 20 1 6.7566 -0.1367 0.4400 21 6 6.3849 -1.3856 -1.3428 22 8 5.4675 -1.8972 -1.9399 23 8 7.6272 -1.8776 -1.4719 24 6 7.7941 -3.0252 -2.3456 25 1 -0.5400 0.9353 -0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3586 2.1316 0.0895 29 1 2.6213 1.4026 -0.9314 30 1 1.4886 1.6967 2.5460 31 1 3.0988 1.3604 3.2260 32 1 2.5405 5.8656 4.4510 33 1 5.6634 1.1257 -2.2146 34 1 6.1046 2.0447 -0.6775 35 1 8.8430 -3.3214 -2.3597 36 1 7.1880 -3.8531 -1.9779 37 1 7.4768 -2.7627 -3.3548 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292566151.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:16 Heat of formation + Delta-G solvation = -88.384431 kcal Electronic energy + Delta-G solvation = -20249.106020 eV Core-core repulsion = 16992.736609 eV Total energy + Delta-G solvation = -3256.369411 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.89862 -40.85267 -38.15440 -37.37477 -36.73465 -35.02498 -33.77243 -30.55624 -29.14342 -27.04659 -26.32279 -25.13266 -23.44686 -21.62785 -21.04308 -19.95939 -19.12828 -19.02115 -18.11401 -17.51781 -17.39428 -17.16011 -16.35876 -15.93160 -15.71623 -15.25160 -14.87999 -14.54103 -14.33421 -14.20910 -13.74876 -13.54107 -13.44338 -13.06006 -12.94283 -12.87496 -12.52664 -12.30574 -11.97659 -11.93888 -11.83311 -11.77174 -11.70374 -11.61142 -10.82759 -10.77210 -10.33940 -9.49982 -8.33406 -6.38260 0.87704 1.26136 1.34082 1.36647 1.45154 1.47181 1.59055 2.31094 2.33571 2.70337 3.00925 3.39352 3.51804 3.63495 3.87253 4.02950 4.12287 4.22917 4.29936 4.34030 4.43596 4.54111 4.70565 4.72737 4.81615 4.84879 4.86899 4.93758 5.06292 5.25002 5.44449 5.50241 5.71667 5.89941 6.23282 6.58437 6.62051 6.63422 7.19177 7.32930 8.83169 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.023152 B = 0.004868 C = 0.004364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.087668 B = 5750.994054 C = 6414.514867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.187 4.187 3 C 0.132 3.868 4 N -0.588 5.588 5 C 0.227 3.773 6 C -0.535 4.535 7 H 0.034 0.966 8 C 0.015 3.985 9 N -0.942 5.942 10 Si 0.942 3.058 11 H -0.276 1.276 12 H -0.274 1.274 13 H -0.241 1.241 14 C 0.530 3.470 15 O -0.586 6.586 16 C -0.156 4.156 17 H 0.153 0.847 18 C -0.094 4.094 19 C -0.144 4.144 20 H 0.138 0.862 21 C 0.505 3.495 22 O -0.526 6.526 23 O -0.358 6.358 24 C 0.027 3.973 25 H 0.103 0.897 26 H 0.117 0.883 27 H 0.111 0.889 28 H 0.082 0.918 29 H 0.103 0.897 30 H 0.048 0.952 31 H 0.019 0.981 32 H 0.269 0.731 33 H 0.143 0.857 34 H 0.113 0.887 35 H 0.133 0.867 36 H 0.062 0.938 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.845 -15.319 -13.649 20.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.206 4.206 3 C 0.010 3.990 4 N -0.317 5.317 5 C 0.105 3.895 6 C -0.574 4.574 7 H 0.053 0.947 8 C -0.183 4.183 9 N -0.582 5.582 10 Si 0.765 3.235 11 H -0.202 1.202 12 H -0.199 1.199 13 H -0.164 1.164 14 C 0.319 3.681 15 O -0.467 6.467 16 C -0.177 4.177 17 H 0.170 0.830 18 C -0.132 4.132 19 C -0.164 4.164 20 H 0.156 0.844 21 C 0.349 3.651 22 O -0.415 6.415 23 O -0.274 6.274 24 C -0.066 4.066 25 H 0.121 0.879 26 H 0.135 0.865 27 H 0.129 0.871 28 H 0.101 0.899 29 H 0.121 0.879 30 H 0.065 0.935 31 H 0.037 0.963 32 H 0.078 0.922 33 H 0.161 0.839 34 H 0.131 0.869 35 H 0.151 0.849 36 H 0.081 0.919 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.952 -15.321 -13.251 20.471 hybrid contribution -0.210 0.033 0.920 0.944 sum 2.742 -15.289 -12.331 19.832 Atomic orbital electron populations 1.24080 0.95345 1.03074 0.97806 1.23304 0.96897 0.98034 1.02331 1.20864 0.92643 0.96476 0.88981 1.47852 1.11472 1.59338 1.13017 1.19331 0.95495 0.92384 0.82305 1.21526 1.40648 0.93197 1.02000 0.94734 1.25768 0.95886 0.95322 1.01331 1.70036 1.49321 1.08389 1.30491 0.85791 0.79139 0.79395 0.79130 1.20174 1.19921 1.16416 1.20019 0.81661 0.77349 0.89076 1.90644 1.53924 1.58636 1.43515 1.22284 0.93410 1.05515 0.96530 0.82981 1.23231 0.95889 0.92870 1.01182 1.21619 0.99085 0.93636 1.02054 0.84384 1.22384 0.80850 0.83021 0.78852 1.90643 1.45023 1.59850 1.46033 1.86496 1.30353 1.46972 1.63599 1.23636 1.05231 0.84846 0.92861 0.87876 0.86517 0.87141 0.89941 0.87872 0.93455 0.96328 0.92239 0.83914 0.86894 0.84910 0.91884 0.91243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.68 14.32 67.78 0.97 -2.71 16 2 C -0.19 -4.84 9.54 25.65 0.24 -4.60 16 3 C 0.13 4.08 5.49 85.63 0.47 4.55 16 4 N -0.59 -24.09 2.44 -830.50 -2.03 -26.11 16 5 C 0.23 11.11 4.23 85.63 0.36 11.47 16 6 C -0.54 -31.21 9.94 25.60 0.25 -30.95 16 7 H 0.03 2.23 8.06 -2.91 -0.02 2.21 16 8 C 0.02 0.90 5.47 84.65 0.46 1.36 16 9 N -0.94 -59.02 13.96 21.45 0.30 -58.72 16 10 Si 0.94 44.38 27.47 68.60 1.88 46.26 16 11 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 12 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 13 H -0.24 -10.29 6.54 99.48 0.65 -9.64 16 14 C 0.53 21.61 7.45 87.66 0.65 22.26 16 15 O -0.59 -29.11 15.84 -3.04 -0.05 -29.15 16 16 C -0.16 -4.61 4.31 -11.54 -0.05 -4.66 16 17 H 0.15 3.97 6.50 -2.39 -0.02 3.95 16 18 C -0.09 -2.25 9.94 30.59 0.30 -1.95 16 19 C -0.14 -3.89 5.81 -11.54 -0.07 -3.96 16 20 H 0.14 4.07 7.67 -2.39 -0.02 4.05 16 21 C 0.50 12.83 7.74 71.23 0.55 13.38 16 22 O -0.53 -14.98 16.01 21.98 0.35 -14.62 16 23 O -0.36 -7.86 10.57 -51.50 -0.54 -8.40 16 24 C 0.03 0.38 10.56 113.37 1.20 1.58 16 25 H 0.10 2.23 7.84 -2.91 -0.02 2.21 16 26 H 0.12 2.11 8.06 -2.91 -0.02 2.08 16 27 H 0.11 2.79 8.03 -2.91 -0.02 2.76 16 28 H 0.08 2.66 7.72 -2.39 -0.02 2.64 16 29 H 0.10 2.65 6.64 -2.38 -0.02 2.64 16 30 H 0.05 2.16 7.13 -2.38 -0.02 2.15 16 31 H 0.02 0.98 6.85 -2.39 -0.02 0.97 16 32 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 33 H 0.14 2.48 8.14 -2.39 -0.02 2.46 16 34 H 0.11 2.91 8.14 -2.39 -0.02 2.89 16 35 H 0.13 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.06 0.91 8.13 -2.39 -0.02 0.89 16 37 H 0.07 0.91 8.13 -2.39 -0.02 0.89 16 Total: -1.00 -76.24 325.33 6.27 -69.97 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: 1.00 Total: 15.01 kcal Atomic # 6 Polarization: 0.43 SS G_CDS: 5.35 Total: 5.78 kcal Atomic # 7 Polarization: -83.11 SS G_CDS: -1.73 Total: -84.83 kcal Atomic # 8 Polarization: -51.94 SS G_CDS: -0.24 Total: -52.18 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 1.88 Total: 46.26 kcal Total: -76.24 6.27 -69.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292566151.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.415 kcal (2) G-P(sol) polarization free energy of solvation -76.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds