Wall clock time and date at job start Mon Mar 30 2020 00:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50700 * 120.00166 * 2 1 4 4 N 1.46499 * 109.47363 * 124.99601 * 3 2 1 5 5 C 1.46500 * 120.00387 * 269.99914 * 4 3 2 6 6 C 1.50696 * 109.47031 * 270.00172 * 5 4 3 7 7 H 1.08001 * 120.00327 * 359.97438 * 6 5 4 8 8 C 1.37881 * 119.99737 * 179.97438 * 6 5 4 9 9 N 1.31510 * 119.99848 * 359.97438 * 8 6 5 10 10 Si 1.86792 * 119.99979 * 179.97438 * 8 6 5 11 11 H 1.48508 * 109.47183 * 60.00156 * 10 8 6 12 12 H 1.48506 * 109.47431 * 179.97438 * 10 8 6 13 13 H 1.48503 * 109.47105 * 300.00109 * 10 8 6 14 14 C 1.34782 * 120.00064 * 89.99776 * 4 3 2 15 15 O 1.21280 * 120.00276 * 180.02562 * 14 4 3 16 16 C 1.50698 * 119.99631 * 0.02562 * 14 4 3 17 17 H 1.08999 * 115.56683 * 309.24531 * 16 14 4 18 18 C 1.53008 * 117.49860 * 163.55981 * 16 14 4 19 19 C 1.52995 * 60.00059 * 252.51206 * 18 16 14 20 20 H 1.09003 * 117.49595 * 252.51184 * 19 18 16 21 21 C 1.50699 * 117.50006 * 107.51204 * 19 18 16 22 22 O 1.20821 * 120.00020 * 242.53492 * 21 19 18 23 23 O 1.34231 * 119.99593 * 62.54300 * 21 19 18 24 24 C 1.45201 * 116.99527 * 180.02562 * 23 21 19 25 25 H 1.07995 * 120.00536 * 179.97438 * 1 2 3 26 26 H 1.08002 * 119.99940 * 0.02562 * 1 2 3 27 27 H 1.08002 * 119.99940 * 179.97438 * 2 1 3 28 28 H 1.09002 * 109.47066 * 4.99479 * 3 2 1 29 29 H 1.08997 * 109.47130 * 244.99603 * 3 2 1 30 30 H 1.09005 * 109.46769 * 30.00053 * 5 4 3 31 31 H 1.09001 * 109.47362 * 149.99250 * 5 4 3 32 32 H 0.97001 * 120.00199 * 179.97438 * 9 8 6 33 33 H 1.08998 * 117.49820 * 145.01376 * 18 16 14 34 34 H 1.09003 * 117.49302 * 0.02562 * 18 16 14 35 35 H 1.08999 * 109.47073 * 180.02562 * 24 23 21 36 36 H 1.09001 * 109.46930 * 299.99775 * 24 23 21 37 37 H 1.08999 * 109.47352 * 59.99541 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1315 5 6 2.5588 1.8651 2.4249 6 6 2.8442 3.3437 2.4803 7 1 3.3040 3.8370 1.6366 8 6 2.5184 4.0669 3.6081 9 7 1.9581 3.4663 4.6352 10 14 2.8728 5.8996 3.6772 11 1 2.1379 6.5874 2.5852 12 1 2.4308 6.4403 4.9877 13 1 4.3309 6.1283 3.5131 14 6 4.2497 0.8661 0.9825 15 8 5.0196 0.8879 1.9193 16 6 4.6972 0.3182 -0.3481 17 1 4.0412 -0.4297 -0.7935 18 6 6.2020 0.1655 -0.5792 19 6 5.4265 1.2726 -1.2959 20 1 5.2501 1.1526 -2.3648 21 6 5.6425 2.6886 -0.8277 22 8 4.7214 3.3194 -0.3658 23 8 6.8584 3.2492 -0.9241 24 6 6.9932 4.6160 -0.4531 25 1 -0.5401 -0.9352 -0.0004 26 1 -0.5400 0.9353 -0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3586 2.1316 0.0895 29 1 2.6213 1.4025 -0.9313 30 1 1.4887 1.6968 2.5459 31 1 3.0988 1.3604 3.2260 32 1 1.7292 3.9749 5.4288 33 1 6.5359 -0.6829 -1.1765 34 1 6.8681 0.4609 0.2314 35 1 8.0229 4.9470 -0.5883 36 1 6.3262 5.2638 -1.0220 37 1 6.7316 4.6637 0.6039 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292566157.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:20 Heat of formation + Delta-G solvation = -65.073067 kcal Electronic energy + Delta-G solvation = -21247.217845 eV Core-core repulsion = 17991.859291 eV Total energy + Delta-G solvation = -3255.358554 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.50708 -39.02208 -36.49008 -35.87595 -35.36968 -33.06815 -31.93762 -28.07943 -27.64714 -25.53795 -24.64959 -23.88172 -21.75458 -20.55778 -19.77701 -18.45256 -17.30666 -16.71807 -16.39647 -16.26097 -15.69095 -15.19363 -14.87542 -14.50640 -14.17348 -13.78031 -13.30653 -12.81235 -12.75109 -12.53982 -12.15094 -11.87411 -11.77883 -11.53062 -11.23370 -11.01338 -10.82489 -10.69213 -10.58723 -10.51310 -10.44536 -10.07039 -10.05882 -9.47547 -9.12444 -8.91351 -8.31662 -7.56461 -5.92119 -3.93724 2.46472 2.50507 2.76379 3.21554 3.38739 3.41547 3.46125 3.76554 4.08241 4.53695 4.74434 4.79367 4.83188 5.10349 5.21070 5.30674 5.41042 5.43137 5.44423 5.48203 5.63397 5.69779 5.77960 5.83530 6.07917 6.10658 6.33517 6.64007 6.83595 6.97240 7.16934 7.53393 7.67306 7.99805 8.12907 8.39653 8.50466 9.04335 9.20972 9.69900 11.16596 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.012982 B = 0.009299 C = 0.006312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2156.377253 B = 3010.372370 C = 4435.236088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.168 4.168 3 C 0.142 3.858 4 N -0.574 5.574 5 C 0.248 3.752 6 C -0.516 4.516 7 H 0.070 0.930 8 C 0.057 3.943 9 N -0.901 5.901 10 Si 0.897 3.103 11 H -0.278 1.278 12 H -0.288 1.288 13 H -0.279 1.279 14 C 0.533 3.467 15 O -0.541 6.541 16 C -0.156 4.156 17 H 0.133 0.867 18 C -0.127 4.127 19 C -0.142 4.142 20 H 0.146 0.854 21 C 0.474 3.526 22 O -0.461 6.461 23 O -0.360 6.360 24 C 0.036 3.964 25 H 0.093 0.907 26 H 0.099 0.901 27 H 0.103 0.897 28 H 0.085 0.915 29 H 0.075 0.925 30 H 0.031 0.969 31 H 0.041 0.959 32 H 0.261 0.739 33 H 0.113 0.887 34 H 0.113 0.887 35 H 0.097 0.903 36 H 0.060 0.940 37 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.854 -5.481 -15.086 16.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.188 4.188 3 C 0.018 3.982 4 N -0.303 5.303 5 C 0.129 3.871 6 C -0.555 4.555 7 H 0.088 0.912 8 C -0.144 4.144 9 N -0.541 5.541 10 Si 0.725 3.275 11 H -0.204 1.204 12 H -0.214 1.214 13 H -0.204 1.204 14 C 0.319 3.681 15 O -0.420 6.420 16 C -0.178 4.178 17 H 0.151 0.849 18 C -0.164 4.164 19 C -0.161 4.161 20 H 0.164 0.836 21 C 0.314 3.686 22 O -0.345 6.345 23 O -0.277 6.277 24 C -0.058 4.058 25 H 0.112 0.888 26 H 0.117 0.883 27 H 0.121 0.879 28 H 0.104 0.896 29 H 0.093 0.907 30 H 0.049 0.951 31 H 0.059 0.941 32 H 0.071 0.929 33 H 0.131 0.869 34 H 0.132 0.868 35 H 0.116 0.884 36 H 0.079 0.921 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.883 -5.159 -14.204 15.881 hybrid contribution -0.065 1.193 0.095 1.199 sum 4.819 -3.966 -14.109 15.428 Atomic orbital electron populations 1.23806 0.95862 1.01693 1.00778 1.23486 0.96434 0.99101 0.99750 1.20499 0.92932 0.94824 0.89967 1.47970 1.10081 1.58838 1.13395 1.19275 0.95173 0.94073 0.78539 1.21592 1.39355 0.93197 1.01359 0.91195 1.24934 0.95464 0.98489 0.95498 1.69937 1.42833 1.36040 1.05251 0.86585 0.78658 0.85438 0.76836 1.20352 1.21406 1.20445 1.19206 0.82710 0.78524 0.87672 1.90669 1.52809 1.57073 1.41413 1.22581 0.97411 1.01218 0.96546 0.84876 1.23072 0.93310 0.98133 1.01934 1.21692 1.07969 0.86831 0.99656 0.83605 1.22545 0.81114 0.88576 0.76330 1.90858 1.42521 1.62791 1.38285 1.86431 1.33814 1.30596 1.76874 1.23246 1.02543 0.79156 1.00819 0.88844 0.88317 0.87880 0.89632 0.90730 0.95090 0.94142 0.92948 0.86897 0.86832 0.88437 0.92093 0.91406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.47 14.32 29.02 0.42 -2.06 16 2 C -0.17 -2.48 9.74 -36.03 -0.35 -2.83 16 3 C 0.14 2.50 5.60 -5.19 -0.03 2.47 16 4 N -0.57 -12.80 2.37 -176.43 -0.42 -13.21 16 5 C 0.25 6.81 5.16 -5.20 -0.03 6.79 16 6 C -0.52 -15.36 9.39 -34.44 -0.32 -15.68 16 7 H 0.07 2.13 6.91 -52.49 -0.36 1.77 16 8 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 9 N -0.90 -27.77 13.29 55.43 0.74 -27.03 16 10 Si 0.90 23.02 29.54 -169.99 -5.02 18.00 16 11 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 13 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 14 C 0.53 11.53 5.61 -10.98 -0.06 11.47 16 15 O -0.54 -14.14 15.97 5.56 0.09 -14.05 16 16 C -0.16 -2.34 4.37 -91.77 -0.40 -2.74 16 17 H 0.13 1.54 7.87 -51.93 -0.41 1.14 16 18 C -0.13 -1.61 9.74 -26.73 -0.26 -1.87 16 19 C -0.14 -1.90 6.17 -91.77 -0.57 -2.46 16 20 H 0.15 1.35 8.14 -51.93 -0.42 0.93 16 21 C 0.47 8.27 7.00 36.01 0.25 8.52 16 22 O -0.46 -9.90 14.69 -18.75 -0.28 -10.18 16 23 O -0.36 -5.68 10.57 -39.26 -0.41 -6.10 16 24 C 0.04 0.50 10.56 101.05 1.07 1.57 16 25 H 0.09 1.07 8.06 -52.49 -0.42 0.65 16 26 H 0.10 1.33 7.84 -52.49 -0.41 0.92 16 27 H 0.10 1.38 8.00 -52.49 -0.42 0.96 16 28 H 0.09 1.61 7.72 -51.93 -0.40 1.21 16 29 H 0.07 1.16 6.82 -51.93 -0.35 0.80 16 30 H 0.03 0.86 8.07 -51.93 -0.42 0.45 16 31 H 0.04 1.25 7.42 -51.93 -0.39 0.86 16 32 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 33 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.11 1.72 7.77 -51.93 -0.40 1.31 16 35 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.06 0.81 8.13 -51.93 -0.42 0.39 16 37 H 0.07 1.11 8.13 -51.93 -0.42 0.68 16 LS Contribution 326.35 15.07 4.92 4.92 Total: -1.00 -36.55 326.35 -6.01 -42.55 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: -5.24 Total: 0.33 kcal Atomic # 6 Polarization: 5.16 SS G_CDS: -0.38 Total: 4.78 kcal Atomic # 7 Polarization: -40.57 SS G_CDS: 0.32 Total: -40.25 kcal Atomic # 8 Polarization: -29.73 SS G_CDS: -0.60 Total: -30.33 kcal Atomic # 14 Polarization: 23.02 SS G_CDS: -5.02 Total: 18.00 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -36.55 -6.01 -42.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292566157.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.519 kcal (2) G-P(sol) polarization free energy of solvation -36.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds