Wall clock time and date at job start Mon Mar 30 2020 00:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50700 * 120.00166 * 2 1 4 4 N 1.46499 * 109.47363 * 124.99601 * 3 2 1 5 5 C 1.46500 * 120.00387 * 269.99914 * 4 3 2 6 6 C 1.50696 * 109.47031 * 270.00172 * 5 4 3 7 7 H 1.08001 * 120.00327 * 359.97438 * 6 5 4 8 8 C 1.37881 * 119.99737 * 179.97438 * 6 5 4 9 9 N 1.31510 * 119.99848 * 359.97438 * 8 6 5 10 10 Si 1.86792 * 119.99979 * 179.97438 * 8 6 5 11 11 H 1.48508 * 109.47183 * 60.00156 * 10 8 6 12 12 H 1.48506 * 109.47431 * 179.97438 * 10 8 6 13 13 H 1.48503 * 109.47105 * 300.00109 * 10 8 6 14 14 C 1.34782 * 120.00064 * 89.99776 * 4 3 2 15 15 O 1.21280 * 120.00276 * 180.02562 * 14 4 3 16 16 C 1.50698 * 119.99631 * 0.02562 * 14 4 3 17 17 H 1.08999 * 115.56683 * 309.24531 * 16 14 4 18 18 C 1.53008 * 117.49860 * 163.55981 * 16 14 4 19 19 C 1.52995 * 60.00059 * 252.51206 * 18 16 14 20 20 H 1.09003 * 117.49595 * 252.51184 * 19 18 16 21 21 C 1.50699 * 117.50006 * 107.51204 * 19 18 16 22 22 O 1.20821 * 120.00020 * 242.53492 * 21 19 18 23 23 O 1.34231 * 119.99593 * 62.54300 * 21 19 18 24 24 C 1.45201 * 116.99527 * 180.02562 * 23 21 19 25 25 H 1.07995 * 120.00536 * 179.97438 * 1 2 3 26 26 H 1.08002 * 119.99940 * 0.02562 * 1 2 3 27 27 H 1.08002 * 119.99940 * 179.97438 * 2 1 3 28 28 H 1.09002 * 109.47066 * 4.99479 * 3 2 1 29 29 H 1.08997 * 109.47130 * 244.99603 * 3 2 1 30 30 H 1.09005 * 109.46769 * 30.00053 * 5 4 3 31 31 H 1.09001 * 109.47362 * 149.99250 * 5 4 3 32 32 H 0.97001 * 120.00199 * 179.97438 * 9 8 6 33 33 H 1.08998 * 117.49820 * 145.01376 * 18 16 14 34 34 H 1.09003 * 117.49302 * 0.02562 * 18 16 14 35 35 H 1.08999 * 109.47073 * 180.02562 * 24 23 21 36 36 H 1.09001 * 109.46930 * 299.99775 * 24 23 21 37 37 H 1.08999 * 109.47352 * 59.99541 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1315 5 6 2.5588 1.8651 2.4249 6 6 2.8442 3.3437 2.4803 7 1 3.3040 3.8370 1.6366 8 6 2.5184 4.0669 3.6081 9 7 1.9581 3.4663 4.6352 10 14 2.8728 5.8996 3.6772 11 1 2.1379 6.5874 2.5852 12 1 2.4308 6.4403 4.9877 13 1 4.3309 6.1283 3.5131 14 6 4.2497 0.8661 0.9825 15 8 5.0196 0.8879 1.9193 16 6 4.6972 0.3182 -0.3481 17 1 4.0412 -0.4297 -0.7935 18 6 6.2020 0.1655 -0.5792 19 6 5.4265 1.2726 -1.2959 20 1 5.2501 1.1526 -2.3648 21 6 5.6425 2.6886 -0.8277 22 8 4.7214 3.3194 -0.3658 23 8 6.8584 3.2492 -0.9241 24 6 6.9932 4.6160 -0.4531 25 1 -0.5401 -0.9352 -0.0004 26 1 -0.5400 0.9353 -0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3586 2.1316 0.0895 29 1 2.6213 1.4025 -0.9313 30 1 1.4887 1.6968 2.5459 31 1 3.0988 1.3604 3.2260 32 1 1.7292 3.9749 5.4288 33 1 6.5359 -0.6829 -1.1765 34 1 6.8681 0.4609 0.2314 35 1 8.0229 4.9470 -0.5883 36 1 6.3262 5.2638 -1.0220 37 1 6.7316 4.6637 0.6039 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292566157.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:20 Heat of formation + Delta-G solvation = -89.902571 kcal Electronic energy + Delta-G solvation = -21248.294533 eV Core-core repulsion = 17991.859291 eV Total energy + Delta-G solvation = -3256.435242 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.86130 -40.57401 -37.81400 -37.34357 -36.87160 -35.06941 -33.64259 -29.89266 -29.08412 -26.97058 -26.24494 -25.33568 -23.43987 -21.81762 -20.99076 -19.91326 -18.74887 -18.55281 -18.06468 -17.63435 -17.33979 -16.75090 -16.24686 -16.14566 -15.77951 -15.19299 -14.77261 -14.29432 -14.17631 -14.11770 -13.94669 -13.37155 -13.15142 -13.03694 -12.89933 -12.84663 -12.65737 -12.23350 -12.21191 -11.82301 -11.80560 -11.67792 -11.58228 -11.38294 -10.66037 -10.65059 -10.30102 -9.42528 -8.22446 -6.34099 1.14990 1.28243 1.32720 1.33557 1.40847 1.54422 1.79749 2.31840 2.46455 2.71251 3.05860 3.54233 3.65775 3.68446 3.88953 4.11171 4.22033 4.25407 4.26378 4.34405 4.46948 4.61401 4.70537 4.85699 4.88035 4.99450 5.07653 5.10606 5.20920 5.37449 5.58077 5.70938 5.78319 5.98279 6.10414 6.67810 6.77820 6.84639 7.29086 7.47609 8.84842 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.012982 B = 0.009299 C = 0.006312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2156.377253 B = 3010.372370 C = 4435.236088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.181 4.181 3 C 0.142 3.858 4 N -0.581 5.581 5 C 0.267 3.733 6 C -0.531 4.531 7 H 0.057 0.943 8 C 0.005 3.995 9 N -0.930 5.930 10 Si 0.962 3.038 11 H -0.265 1.265 12 H -0.274 1.274 13 H -0.281 1.281 14 C 0.521 3.479 15 O -0.604 6.604 16 C -0.168 4.168 17 H 0.179 0.821 18 C -0.108 4.108 19 C -0.130 4.130 20 H 0.203 0.797 21 C 0.463 3.537 22 O -0.513 6.513 23 O -0.357 6.357 24 C 0.032 3.968 25 H 0.121 0.879 26 H 0.092 0.908 27 H 0.124 0.876 28 H 0.062 0.938 29 H 0.101 0.899 30 H 0.018 0.982 31 H -0.006 1.006 32 H 0.266 0.734 33 H 0.169 0.831 34 H 0.080 0.920 35 H 0.140 0.860 36 H 0.065 0.935 37 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.282 -6.283 -18.042 19.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.200 4.200 3 C 0.019 3.981 4 N -0.309 5.309 5 C 0.145 3.855 6 C -0.570 4.570 7 H 0.075 0.925 8 C -0.193 4.193 9 N -0.571 5.571 10 Si 0.786 3.214 11 H -0.189 1.189 12 H -0.198 1.198 13 H -0.207 1.207 14 C 0.310 3.690 15 O -0.486 6.486 16 C -0.188 4.188 17 H 0.196 0.804 18 C -0.145 4.145 19 C -0.148 4.148 20 H 0.219 0.781 21 C 0.306 3.694 22 O -0.401 6.401 23 O -0.274 6.274 24 C -0.061 4.061 25 H 0.139 0.861 26 H 0.110 0.890 27 H 0.142 0.858 28 H 0.081 0.919 29 H 0.119 0.881 30 H 0.036 0.964 31 H 0.012 0.988 32 H 0.074 0.926 33 H 0.187 0.813 34 H 0.099 0.901 35 H 0.158 0.842 36 H 0.084 0.916 37 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 5.305 -5.977 -17.215 18.980 hybrid contribution -0.190 1.463 1.043 1.807 sum 5.116 -4.514 -16.172 17.552 Atomic orbital electron populations 1.24041 0.95612 1.02755 0.98511 1.23373 0.96752 0.98177 1.01685 1.20666 0.92263 0.95982 0.89149 1.47947 1.11671 1.58574 1.12685 1.18645 0.93505 0.92836 0.80493 1.21776 1.39480 0.94468 1.01280 0.92473 1.25820 0.95080 1.03422 0.95028 1.70049 1.43384 1.37912 1.05760 0.85565 0.78305 0.79701 0.77786 1.18939 1.19841 1.20667 1.20364 0.81516 0.77293 0.89782 1.90624 1.54203 1.59489 1.44292 1.22578 0.99956 1.03033 0.93257 0.80406 1.23268 0.90894 0.99280 1.01103 1.22048 1.06995 0.83980 1.01818 0.78057 1.23564 0.80723 0.90120 0.75032 1.90845 1.44019 1.64455 1.40733 1.86443 1.33195 1.31341 1.76407 1.23438 1.05274 0.78718 0.98690 0.86079 0.88973 0.85796 0.91900 0.88128 0.96366 0.98841 0.92561 0.81318 0.90116 0.84205 0.91603 0.94825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.28 14.32 67.78 0.97 -3.31 16 2 C -0.18 -4.99 9.74 25.65 0.25 -4.74 16 3 C 0.14 4.95 5.60 85.63 0.48 5.43 16 4 N -0.58 -26.72 2.37 -830.50 -1.97 -28.69 16 5 C 0.27 15.53 5.16 85.63 0.44 15.97 16 6 C -0.53 -33.19 9.39 25.60 0.24 -32.95 16 7 H 0.06 3.66 6.91 -2.91 -0.02 3.64 16 8 C 0.00 0.28 5.46 84.66 0.46 0.74 16 9 N -0.93 -59.32 13.29 21.45 0.28 -59.04 16 10 Si 0.96 48.42 29.54 68.60 2.03 50.45 16 11 H -0.26 -12.68 7.11 99.48 0.71 -11.98 16 12 H -0.27 -13.04 7.11 99.48 0.71 -12.33 16 13 H -0.28 -14.15 7.11 99.48 0.71 -13.44 16 14 C 0.52 22.97 5.61 87.66 0.49 23.46 16 15 O -0.60 -33.24 15.97 -3.03 -0.05 -33.29 16 16 C -0.17 -4.57 4.37 -11.54 -0.05 -4.62 16 17 H 0.18 3.23 7.87 -2.39 -0.02 3.21 16 18 C -0.11 -2.37 9.74 30.60 0.30 -2.07 16 19 C -0.13 -3.01 6.17 -11.54 -0.07 -3.08 16 20 H 0.20 2.44 8.14 -2.39 -0.02 2.42 16 21 C 0.46 15.77 7.00 71.24 0.50 16.27 16 22 O -0.51 -22.51 14.69 21.98 0.32 -22.18 16 23 O -0.36 -10.96 10.57 -51.43 -0.54 -11.50 16 24 C 0.03 0.89 10.56 113.37 1.20 2.09 16 25 H 0.12 2.38 8.06 -2.91 -0.02 2.35 16 26 H 0.09 2.41 7.84 -2.91 -0.02 2.38 16 27 H 0.12 2.92 8.00 -2.91 -0.02 2.90 16 28 H 0.06 2.44 7.72 -2.39 -0.02 2.42 16 29 H 0.10 2.94 6.82 -2.39 -0.02 2.92 16 30 H 0.02 1.09 8.07 -2.38 -0.02 1.07 16 31 H -0.01 -0.43 7.42 -2.39 -0.02 -0.45 16 32 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 33 H 0.17 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.08 2.36 7.77 -2.39 -0.02 2.34 16 35 H 0.14 2.58 8.14 -2.39 -0.02 2.56 16 36 H 0.07 1.74 8.13 -2.39 -0.02 1.72 16 37 H 0.03 1.14 8.13 -2.39 -0.02 1.12 16 Total: -1.00 -87.62 326.35 6.33 -81.29 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: 1.05 Total: 9.77 kcal Atomic # 6 Polarization: 8.00 SS G_CDS: 5.21 Total: 13.20 kcal Atomic # 7 Polarization: -86.04 SS G_CDS: -1.69 Total: -87.73 kcal Atomic # 8 Polarization: -66.71 SS G_CDS: -0.27 Total: -66.98 kcal Atomic # 14 Polarization: 48.42 SS G_CDS: 2.03 Total: 50.45 kcal Total: -87.62 6.33 -81.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292566157.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.611 kcal (2) G-P(sol) polarization free energy of solvation -87.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds