Wall clock time and date at job start Mon Mar 30 2020 00:35:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46499 * 109.47020 * 2 1 4 4 C 1.36942 * 120.00078 * 82.93140 * 3 2 1 5 5 H 1.07999 * 120.00061 * 170.33975 * 4 3 2 6 6 C 1.38812 * 119.99864 * 350.34368 * 4 3 2 7 7 N 1.31618 * 120.00128 * 2.29214 * 6 4 3 8 8 Si 1.86802 * 119.99743 * 182.29361 * 6 4 3 9 9 H 1.48493 * 109.47146 * 0.02562 * 8 6 4 10 10 H 1.48511 * 109.46716 * 119.99714 * 8 6 4 11 11 H 1.48495 * 109.46890 * 239.99452 * 8 6 4 12 12 C 1.46497 * 119.99818 * 262.93110 * 3 2 1 13 13 H 1.09006 * 109.46966 * 174.31601 * 12 3 2 14 14 C 1.52997 * 109.47235 * 54.31985 * 12 3 2 15 15 C 1.50697 * 109.47194 * 294.31580 * 12 3 2 16 16 C 1.35174 * 125.60960 * 218.07133 * 15 12 3 17 17 C 1.40305 * 107.12749 * 180.02562 * 16 15 12 18 18 C 1.36641 * 106.70149 * 0.02562 * 17 16 15 19 19 C 1.46473 * 125.99314 * 179.73588 * 18 17 16 20 20 O 1.21620 * 120.00229 * 359.97438 * 19 18 17 21 21 O 1.34900 * 119.99832 * 179.97438 * 19 18 17 22 22 C 1.45193 * 117.00198 * 179.97438 * 21 19 18 23 23 O 1.33910 * 125.61138 * 38.10204 * 15 12 3 24 24 H 1.09001 * 109.46958 * 308.02035 * 1 2 3 25 25 H 1.08999 * 109.47653 * 68.02426 * 1 2 3 26 26 H 1.08998 * 109.47092 * 188.02648 * 1 2 3 27 27 H 1.08999 * 109.47260 * 239.99599 * 2 1 3 28 28 H 1.09006 * 109.46938 * 119.99876 * 2 1 3 29 29 H 0.96995 * 120.00159 * 180.02562 * 7 6 4 30 30 H 1.08999 * 109.47010 * 300.00068 * 14 12 3 31 31 H 1.09001 * 109.47247 * 59.99492 * 14 12 3 32 32 H 1.08998 * 109.47366 * 179.97438 * 14 12 3 33 33 H 1.08004 * 126.43208 * 0.06341 * 16 15 12 34 34 H 1.07994 * 126.64885 * 179.97438 * 17 16 15 35 35 H 1.09001 * 109.47018 * 300.00015 * 22 21 19 36 36 H 1.09006 * 109.47316 * 59.99811 * 22 21 19 37 37 H 1.08995 * 109.47415 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1089 2.0754 1.1769 5 1 2.6112 3.0312 1.2028 6 6 1.5553 1.5506 2.3367 7 7 0.9830 0.3656 2.3149 8 14 1.6226 2.5263 3.9282 9 1 2.3137 3.8185 3.6878 10 1 0.2415 2.7861 4.4083 11 1 2.3654 1.7503 4.9535 12 6 2.4096 2.0197 -1.2591 13 1 2.6473 3.0678 -1.0764 14 6 1.2555 1.9254 -2.2591 15 6 3.6203 1.3207 -1.8218 16 6 4.6555 1.9221 -2.4493 17 6 5.5612 0.9136 -2.8117 18 6 5.0260 -0.2678 -2.3819 19 6 5.6242 -1.5946 -2.5473 20 8 6.6947 -1.7128 -3.1122 21 8 4.9877 -2.6853 -2.0730 22 6 5.6388 -3.9675 -2.2730 23 8 3.8473 0.0016 -1.7828 24 1 -0.3633 0.6330 0.8096 25 1 -0.3634 0.3845 -0.9530 26 1 -0.3633 -1.0176 0.1435 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 0.5959 -0.0010 3.1252 30 1 1.0178 0.8774 -2.4417 31 1 0.3798 2.4310 -1.8520 32 1 1.5465 2.4009 -3.1957 33 1 4.7651 2.9802 -2.6361 34 1 6.4992 1.0456 -3.3305 35 1 5.7699 -4.1459 -3.3403 36 1 6.6127 -3.9608 -1.7835 37 1 5.0230 -4.7585 -1.8451 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298130829.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:35:18 Heat of formation + Delta-G solvation = -31.864089 kcal Electronic energy + Delta-G solvation = -21024.908725 eV Core-core repulsion = 17770.990221 eV Total energy + Delta-G solvation = -3253.918505 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.29466 -40.00939 -36.68897 -36.38675 -33.07320 -32.45730 -30.19209 -29.22688 -28.53740 -27.33516 -24.33365 -23.50015 -21.81236 -21.40148 -20.35237 -19.47524 -18.08800 -16.91254 -16.89306 -16.52695 -15.55849 -15.29658 -14.75119 -13.88314 -13.86870 -13.29583 -13.11153 -12.98536 -12.86215 -12.60426 -12.16398 -12.14088 -11.92843 -11.56614 -11.33002 -10.89747 -10.81884 -10.78778 -10.74283 -10.58121 -10.40598 -9.95277 -9.68940 -9.62174 -9.45739 -8.38946 -8.17229 -6.98164 -5.65854 -3.20031 1.16180 2.56891 2.65779 3.14551 3.32677 3.39477 3.41821 3.43529 4.40530 4.91272 5.08881 5.14589 5.16774 5.20314 5.33078 5.45746 5.49931 5.79879 5.85298 5.96654 6.05459 6.12675 6.26489 6.34541 6.46764 6.70281 6.74054 6.78842 7.09077 7.17560 7.31567 7.34218 7.61726 7.82596 7.94778 8.18510 8.43052 9.21573 9.77894 10.19838 11.24038 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.020205 B = 0.005881 C = 0.005492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.469247 B = 4759.740045 C = 5097.159404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.167 3.833 3 N -0.586 5.586 4 C -0.251 4.251 5 H 0.076 0.924 6 C -0.004 4.004 7 N -0.901 5.901 8 Si 0.912 3.088 9 H -0.280 1.280 10 H -0.290 1.290 11 H -0.291 1.291 12 C 0.234 3.766 13 H 0.099 0.901 14 C -0.158 4.158 15 C 0.071 3.929 16 C -0.256 4.256 17 C -0.097 4.097 18 C -0.105 4.105 19 C 0.558 3.442 20 O -0.505 6.505 21 O -0.345 6.345 22 C 0.037 3.963 23 O -0.129 6.129 24 H 0.083 0.917 25 H 0.003 0.997 26 H 0.019 0.981 27 H 0.009 0.991 28 H 0.099 0.901 29 H 0.250 0.750 30 H 0.057 0.943 31 H 0.068 0.932 32 H 0.047 0.953 33 H 0.154 0.846 34 H 0.155 0.845 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.818 -2.054 -9.358 10.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.043 3.957 3 N -0.305 5.305 4 C -0.380 4.380 5 H 0.094 0.906 6 C -0.200 4.200 7 N -0.548 5.548 8 Si 0.742 3.258 9 H -0.205 1.205 10 H -0.216 1.216 11 H -0.218 1.218 12 C 0.123 3.877 13 H 0.117 0.883 14 C -0.217 4.217 15 C 0.013 3.987 16 C -0.276 4.276 17 C -0.117 4.117 18 C -0.155 4.155 19 C 0.405 3.595 20 O -0.396 6.396 21 O -0.260 6.260 22 C -0.057 4.057 23 O -0.022 6.022 24 H 0.102 0.898 25 H 0.022 0.978 26 H 0.039 0.961 27 H 0.028 0.972 28 H 0.117 0.883 29 H 0.061 0.939 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.066 0.934 33 H 0.172 0.828 34 H 0.173 0.827 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 4.851 -2.482 -9.181 10.677 hybrid contribution 0.335 0.380 0.736 0.894 sum 5.186 -2.102 -8.445 10.131 Atomic orbital electron populations 1.22399 0.98910 0.99252 0.98666 1.21059 0.92510 0.83290 0.98830 1.44367 1.73690 1.11780 1.00651 1.19420 1.30441 1.02072 0.86020 0.90605 1.24861 0.99535 0.97291 0.98304 1.70294 1.42028 1.16235 1.26233 0.86058 0.77239 0.79068 0.83406 1.20513 1.21647 1.21784 1.19269 0.86735 0.94576 0.87120 0.88346 1.22355 0.99074 1.02372 0.97870 1.25352 0.99476 0.79883 0.93994 1.21545 0.96079 1.00772 1.09215 1.21820 1.00239 0.90217 0.99375 1.20589 0.91218 0.92400 1.11260 1.19279 0.82037 0.83098 0.75111 1.90886 1.21107 1.86209 1.41349 1.86735 1.50191 1.15991 1.73132 1.23300 0.98672 0.81427 1.02263 1.84332 1.32597 1.25881 1.59407 0.89833 0.97828 0.96146 0.97248 0.88308 0.93912 0.92366 0.91339 0.93381 0.82826 0.82709 0.91872 0.91798 0.87824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.11 9.01 37.16 0.33 -2.77 16 2 C 0.17 4.05 4.59 -4.04 -0.02 4.03 16 3 N -0.59 -13.89 2.43 -166.98 -0.41 -14.30 16 4 C -0.25 -6.47 9.74 -15.06 -0.15 -6.62 16 5 H 0.08 1.89 7.70 -52.49 -0.40 1.49 16 6 C 0.00 -0.10 5.17 -17.43 -0.09 -0.19 16 7 N -0.90 -24.45 7.30 55.49 0.41 -24.04 16 8 Si 0.91 21.11 29.55 -169.99 -5.02 16.08 16 9 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 10 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 C 0.23 4.52 3.14 -69.09 -0.22 4.30 16 13 H 0.10 1.77 7.81 -51.93 -0.41 1.36 16 14 C -0.16 -2.67 8.14 37.16 0.30 -2.37 16 15 C 0.07 1.34 6.06 -35.40 -0.21 1.12 16 16 C -0.26 -4.12 10.77 -39.90 -0.43 -4.54 16 17 C -0.10 -1.56 10.62 -39.38 -0.42 -1.98 16 18 C -0.10 -1.92 7.18 -36.84 -0.26 -2.19 16 19 C 0.56 9.79 7.93 34.05 0.27 10.06 16 20 O -0.50 -9.03 16.66 -19.36 -0.32 -9.35 16 21 O -0.34 -5.67 10.58 -42.48 -0.45 -6.12 16 22 C 0.04 0.42 10.57 101.05 1.07 1.49 16 23 O -0.13 -2.63 8.54 4.76 0.04 -2.58 16 24 H 0.08 2.18 6.07 -51.93 -0.32 1.86 16 25 H 0.00 0.06 6.46 -51.93 -0.34 -0.27 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.01 0.22 5.86 -51.93 -0.30 -0.08 16 28 H 0.10 2.73 5.94 -51.93 -0.31 2.43 16 29 H 0.25 6.65 8.31 -40.82 -0.34 6.31 16 30 H 0.06 1.05 6.57 -51.93 -0.34 0.70 16 31 H 0.07 1.18 8.11 -51.93 -0.42 0.76 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.15 2.00 8.06 -52.48 -0.42 1.57 16 34 H 0.16 2.11 8.06 -52.49 -0.42 1.69 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 308.95 15.07 4.66 4.66 Total: -1.00 -29.18 308.95 -5.85 -35.03 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: -4.93 Total: 0.26 kcal Atomic # 6 Polarization: 0.18 SS G_CDS: 0.18 Total: 0.36 kcal Atomic # 7 Polarization: -38.34 SS G_CDS: 0.00 Total: -38.34 kcal Atomic # 8 Polarization: -17.32 SS G_CDS: -0.73 Total: -18.05 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -29.18 -5.85 -35.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298130829.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.169 kcal (2) G-P(sol) polarization free energy of solvation -29.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds