Wall clock time and date at job start Mon Mar 30 2020 00:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46499 * 109.47020 * 2 1 4 4 C 1.36942 * 120.00078 * 82.93140 * 3 2 1 5 5 H 1.07999 * 120.00061 * 170.33975 * 4 3 2 6 6 C 1.38812 * 119.99864 * 350.34368 * 4 3 2 7 7 N 1.31618 * 120.00128 * 2.29214 * 6 4 3 8 8 Si 1.86802 * 119.99743 * 182.29361 * 6 4 3 9 9 H 1.48493 * 109.47146 * 0.02562 * 8 6 4 10 10 H 1.48511 * 109.46716 * 119.99714 * 8 6 4 11 11 H 1.48495 * 109.46890 * 239.99452 * 8 6 4 12 12 C 1.46497 * 119.99818 * 262.93110 * 3 2 1 13 13 H 1.09006 * 109.46966 * 174.31601 * 12 3 2 14 14 C 1.52997 * 109.47235 * 54.31985 * 12 3 2 15 15 C 1.50697 * 109.47194 * 294.31580 * 12 3 2 16 16 C 1.35174 * 125.60960 * 218.07133 * 15 12 3 17 17 C 1.40305 * 107.12749 * 180.02562 * 16 15 12 18 18 C 1.36641 * 106.70149 * 0.02562 * 17 16 15 19 19 C 1.46473 * 125.99314 * 179.73588 * 18 17 16 20 20 O 1.21620 * 120.00229 * 359.97438 * 19 18 17 21 21 O 1.34900 * 119.99832 * 179.97438 * 19 18 17 22 22 C 1.45193 * 117.00198 * 179.97438 * 21 19 18 23 23 O 1.33910 * 125.61138 * 38.10204 * 15 12 3 24 24 H 1.09001 * 109.46958 * 308.02035 * 1 2 3 25 25 H 1.08999 * 109.47653 * 68.02426 * 1 2 3 26 26 H 1.08998 * 109.47092 * 188.02648 * 1 2 3 27 27 H 1.08999 * 109.47260 * 239.99599 * 2 1 3 28 28 H 1.09006 * 109.46938 * 119.99876 * 2 1 3 29 29 H 0.96995 * 120.00159 * 180.02562 * 7 6 4 30 30 H 1.08999 * 109.47010 * 300.00068 * 14 12 3 31 31 H 1.09001 * 109.47247 * 59.99492 * 14 12 3 32 32 H 1.08998 * 109.47366 * 179.97438 * 14 12 3 33 33 H 1.08004 * 126.43208 * 0.06341 * 16 15 12 34 34 H 1.07994 * 126.64885 * 179.97438 * 17 16 15 35 35 H 1.09001 * 109.47018 * 300.00015 * 22 21 19 36 36 H 1.09006 * 109.47316 * 59.99811 * 22 21 19 37 37 H 1.08995 * 109.47415 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1089 2.0754 1.1769 5 1 2.6112 3.0312 1.2028 6 6 1.5553 1.5506 2.3367 7 7 0.9830 0.3656 2.3149 8 14 1.6226 2.5263 3.9282 9 1 2.3137 3.8185 3.6878 10 1 0.2415 2.7861 4.4083 11 1 2.3654 1.7503 4.9535 12 6 2.4096 2.0197 -1.2591 13 1 2.6473 3.0678 -1.0764 14 6 1.2555 1.9254 -2.2591 15 6 3.6203 1.3207 -1.8218 16 6 4.6555 1.9221 -2.4493 17 6 5.5612 0.9136 -2.8117 18 6 5.0260 -0.2678 -2.3819 19 6 5.6242 -1.5946 -2.5473 20 8 6.6947 -1.7128 -3.1122 21 8 4.9877 -2.6853 -2.0730 22 6 5.6388 -3.9675 -2.2730 23 8 3.8473 0.0016 -1.7828 24 1 -0.3633 0.6330 0.8096 25 1 -0.3634 0.3845 -0.9530 26 1 -0.3633 -1.0176 0.1435 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 0.5959 -0.0010 3.1252 30 1 1.0178 0.8774 -2.4417 31 1 0.3798 2.4310 -1.8520 32 1 1.5465 2.4009 -3.1957 33 1 4.7651 2.9802 -2.6361 34 1 6.4992 1.0456 -3.3305 35 1 5.7699 -4.1459 -3.3403 36 1 6.6127 -3.9608 -1.7835 37 1 5.0230 -4.7585 -1.8451 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298130829.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:35:17 Heat of formation + Delta-G solvation = -47.569264 kcal Electronic energy + Delta-G solvation = -21025.589753 eV Core-core repulsion = 17770.990221 eV Total energy + Delta-G solvation = -3254.599532 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.67508 -41.28687 -38.41500 -37.66531 -34.66812 -33.94025 -31.94209 -30.80538 -30.13677 -28.41978 -26.05021 -24.99655 -23.42813 -22.82207 -21.83056 -20.98371 -19.41590 -18.76645 -18.15925 -17.82293 -17.25715 -16.72096 -16.26197 -15.65515 -15.14613 -14.96132 -14.47555 -14.32178 -14.13874 -13.92162 -13.78473 -13.60577 -13.20019 -13.12671 -13.05750 -12.65796 -12.52392 -12.26248 -12.25229 -12.01102 -11.91540 -11.79328 -11.51427 -11.33031 -10.99003 -10.34444 -9.54292 -8.86862 -7.62704 -5.17043 -0.18832 1.30732 1.36583 1.50927 1.52955 1.61144 1.83443 2.08224 2.53795 3.37395 3.59299 3.66369 3.94730 3.96375 4.22432 4.29577 4.39688 4.48795 4.58480 4.64553 4.74248 4.80268 4.86247 5.03142 5.08744 5.10562 5.19026 5.28436 5.37611 5.43614 5.47576 5.62241 5.93548 6.02132 6.24087 6.45940 6.53551 7.24807 7.90851 8.29833 9.26149 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.020205 B = 0.005881 C = 0.005492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.469247 B = 4759.740045 C = 5097.159404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.180 3.820 3 N -0.602 5.602 4 C -0.254 4.254 5 H 0.084 0.916 6 C -0.056 4.056 7 N -0.923 5.923 8 Si 0.969 3.031 9 H -0.267 1.267 10 H -0.294 1.294 11 H -0.301 1.301 12 C 0.230 3.770 13 H 0.114 0.886 14 C -0.148 4.148 15 C 0.043 3.957 16 C -0.234 4.234 17 C -0.086 4.086 18 C -0.129 4.129 19 C 0.558 3.442 20 O -0.514 6.514 21 O -0.364 6.364 22 C 0.028 3.972 23 O -0.158 6.158 24 H 0.056 0.944 25 H 0.021 0.979 26 H 0.021 0.979 27 H 0.013 0.987 28 H 0.060 0.940 29 H 0.241 0.759 30 H 0.042 0.958 31 H 0.063 0.937 32 H 0.082 0.918 33 H 0.190 0.810 34 H 0.182 0.818 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.787 -0.848 -10.735 12.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.056 3.944 3 N -0.322 5.322 4 C -0.384 4.384 5 H 0.101 0.899 6 C -0.250 4.250 7 N -0.572 5.572 8 Si 0.799 3.201 9 H -0.192 1.192 10 H -0.221 1.221 11 H -0.229 1.229 12 C 0.121 3.879 13 H 0.131 0.869 14 C -0.206 4.206 15 C -0.014 4.014 16 C -0.254 4.254 17 C -0.106 4.106 18 C -0.178 4.178 19 C 0.405 3.595 20 O -0.406 6.406 21 O -0.280 6.280 22 C -0.064 4.064 23 O -0.053 6.053 24 H 0.075 0.925 25 H 0.040 0.960 26 H 0.040 0.960 27 H 0.031 0.969 28 H 0.078 0.922 29 H 0.052 0.948 30 H 0.061 0.939 31 H 0.082 0.918 32 H 0.101 0.899 33 H 0.207 0.793 34 H 0.200 0.800 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 5.834 -1.258 -10.597 12.162 hybrid contribution 0.118 -0.046 1.064 1.071 sum 5.952 -1.303 -9.533 11.314 Atomic orbital electron populations 1.22200 0.98384 0.98775 0.98419 1.20706 0.92804 0.83918 0.96994 1.44449 1.74409 1.11517 1.01864 1.19743 1.29511 1.02175 0.86933 0.89868 1.25530 1.00242 0.98256 1.00941 1.70499 1.43158 1.17403 1.26136 0.85156 0.76648 0.78243 0.80063 1.19182 1.22142 1.22863 1.19528 0.87545 0.95029 0.85809 0.86864 1.22224 0.97962 1.01707 0.98730 1.25161 1.00223 0.79882 0.96114 1.21933 0.94249 1.02303 1.06872 1.22217 1.00880 0.89252 0.98218 1.21021 0.91081 0.93662 1.12041 1.19275 0.81911 0.83364 0.74980 1.90865 1.21356 1.86427 1.41925 1.86716 1.51013 1.17336 1.72953 1.23680 0.99386 0.79885 1.03491 1.84260 1.33779 1.26836 1.60403 0.92538 0.96013 0.96026 0.96872 0.92157 0.94828 0.93862 0.91822 0.89924 0.79297 0.80018 0.90714 0.91253 0.85196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.61 9.01 71.98 0.65 -4.96 16 2 C 0.18 8.92 4.59 86.38 0.40 9.32 16 3 N -0.60 -28.45 2.43 -682.21 -1.66 -30.11 16 4 C -0.25 -13.06 9.74 84.03 0.82 -12.24 16 5 H 0.08 4.05 7.70 -2.91 -0.02 4.03 16 6 C -0.06 -2.99 5.17 84.86 0.44 -2.55 16 7 N -0.92 -51.56 7.30 21.65 0.16 -51.41 16 8 Si 0.97 43.81 29.55 68.60 2.03 45.83 16 9 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 10 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16 11 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 12 C 0.23 8.49 3.14 44.24 0.14 8.63 16 13 H 0.11 3.78 7.81 -2.38 -0.02 3.76 16 14 C -0.15 -4.70 8.14 71.98 0.59 -4.11 16 15 C 0.04 1.54 6.06 24.98 0.15 1.69 16 16 C -0.23 -6.74 10.77 22.07 0.24 -6.50 16 17 C -0.09 -2.54 10.62 22.40 0.24 -2.30 16 18 C -0.13 -4.58 7.18 24.04 0.17 -4.41 16 19 C 0.56 19.18 7.93 69.97 0.55 19.74 16 20 O -0.51 -17.77 16.66 19.44 0.32 -17.45 16 21 O -0.36 -11.86 10.58 -56.77 -0.60 -12.46 16 22 C 0.03 0.61 10.57 113.37 1.20 1.80 16 23 O -0.16 -6.36 8.54 -4.80 -0.04 -6.41 16 24 H 0.06 3.00 6.07 -2.39 -0.01 2.98 16 25 H 0.02 0.90 6.46 -2.39 -0.02 0.89 16 26 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.01 0.63 5.86 -2.39 -0.01 0.62 16 28 H 0.06 3.46 5.94 -2.38 -0.01 3.45 16 29 H 0.24 13.31 8.31 -92.71 -0.77 12.54 16 30 H 0.04 1.49 6.57 -2.39 -0.02 1.48 16 31 H 0.06 2.07 8.11 -2.39 -0.02 2.05 16 32 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.19 3.97 8.06 -2.91 -0.02 3.94 16 34 H 0.18 4.28 8.06 -2.91 -0.02 4.26 16 35 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 37 H 0.13 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -63.59 308.95 6.86 -56.73 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: 1.07 Total: 11.17 kcal Atomic # 6 Polarization: -1.47 SS G_CDS: 5.58 Total: 4.10 kcal Atomic # 7 Polarization: -80.01 SS G_CDS: -1.50 Total: -81.51 kcal Atomic # 8 Polarization: -36.00 SS G_CDS: -0.32 Total: -36.32 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.83 kcal Total: -63.59 6.86 -56.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298130829.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.157 kcal (2) G-P(sol) polarization free energy of solvation -63.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds