Wall clock time and date at job start Mon Mar 30 2020 00:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34230 * 117.00299 * 2 1 4 4 O 1.20826 * 119.99735 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00276 * 179.97438 * 3 2 1 6 6 H 1.09003 * 115.55840 * 34.29751 * 5 3 2 7 7 C 1.52993 * 117.49925 * 248.60606 * 5 3 2 8 8 C 1.53004 * 60.03164 * 252.52117 * 7 5 3 9 9 H 1.09001 * 117.49598 * 107.47790 * 8 7 5 10 10 C 1.50697 * 117.49770 * 252.49809 * 8 7 5 11 11 O 1.21283 * 120.00039 * 68.60862 * 10 8 7 12 12 N 1.34782 * 119.99970 * 248.60729 * 10 8 7 13 13 C 1.46496 * 119.99816 * 180.02562 * 12 10 8 14 14 C 1.53006 * 109.47195 * 181.16042 * 13 12 10 15 15 C 1.50707 * 115.54521 * 39.68185 * 14 13 12 16 16 H 1.07996 * 119.99890 * 264.52989 * 15 14 13 17 17 C 1.37877 * 119.99619 * 84.53076 * 15 14 13 18 18 N 1.31510 * 120.00465 * 352.92474 * 17 15 14 19 19 Si 1.86804 * 119.99723 * 172.92625 * 17 15 14 20 20 H 1.48505 * 109.47178 * 89.99520 * 19 17 15 21 21 H 1.48493 * 109.47018 * 210.00068 * 19 17 15 22 22 H 1.48503 * 109.46970 * 330.00157 * 19 17 15 23 23 C 1.52994 * 117.50160 * 253.97688 * 14 13 12 24 24 C 1.52993 * 117.49909 * 185.34871 * 14 13 12 25 25 H 1.08994 * 109.47314 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47356 * 300.00826 * 1 2 3 27 27 H 1.09005 * 109.46605 * 60.00455 * 1 2 3 28 28 H 1.08997 * 117.50116 * 145.02451 * 7 5 3 29 29 H 1.09005 * 117.50031 * 0.02562 * 7 5 3 30 30 H 0.97000 * 120.00142 * 0.02562 * 12 10 8 31 31 H 1.08994 * 109.47273 * 301.16482 * 13 12 10 32 32 H 1.09005 * 109.47449 * 61.16268 * 13 12 10 33 33 H 0.96999 * 119.99953 * 185.03463 * 18 17 15 34 34 H 1.08998 * 117.49791 * 359.97438 * 23 14 13 35 35 H 1.08997 * 117.50408 * 145.02130 * 23 14 13 36 36 H 1.08998 * 117.49879 * 214.97904 * 24 14 13 37 37 H 1.09002 * 117.50108 * 0.02562 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 1 4.0788 0.4881 -0.5532 7 6 4.2454 1.8064 1.2643 8 6 4.2010 2.6678 0.0006 9 1 3.5298 3.5266 0.0002 10 6 5.4867 2.8470 -0.7649 11 8 5.9798 1.9066 -1.3508 12 7 6.0886 4.0525 -0.7983 13 6 7.3382 4.2269 -1.5428 14 6 7.8220 5.6710 -1.3963 15 6 7.6500 6.2783 -0.0277 16 1 6.7798 6.8796 0.1907 17 6 8.6035 6.0662 0.9453 18 7 9.5898 5.2241 0.7271 19 14 8.4944 6.9751 2.5737 20 1 7.6935 6.1748 3.5346 21 1 9.8605 7.1807 3.1183 22 1 7.8422 8.2925 2.3625 23 6 7.6629 6.5955 -2.6049 24 6 9.0508 6.0900 -2.2057 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8898 27 1 -0.3633 0.5138 -0.8901 28 1 5.2046 1.3695 1.5420 29 1 3.6037 2.0987 2.0955 30 1 5.6945 4.8046 -0.3294 31 1 8.0942 3.5485 -1.1477 32 1 7.1672 4.0062 -2.5965 33 1 10.2188 5.0196 1.4366 34 1 7.2141 6.1748 -3.5047 35 1 7.4338 7.6432 -2.4105 36 1 9.7346 6.8052 -1.7486 37 1 9.5144 5.3369 -2.8430 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337190217.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:13 Heat of formation + Delta-G solvation = -76.840105 kcal Electronic energy + Delta-G solvation = -19985.787425 eV Core-core repulsion = 16729.918614 eV Total energy + Delta-G solvation = -3255.868811 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.77944 -39.27589 -37.17814 -36.59854 -35.54728 -33.24638 -32.05001 -28.46607 -26.90957 -25.51221 -24.53057 -23.15545 -21.18469 -20.64212 -19.66588 -19.10484 -18.07741 -16.97581 -16.56141 -16.44457 -15.90587 -15.05602 -14.78183 -14.56137 -14.12430 -14.00788 -13.51410 -13.01953 -12.88994 -12.68003 -12.23155 -12.16198 -11.94551 -11.65271 -11.04862 -10.99527 -10.98038 -10.84299 -10.61579 -10.55810 -10.53923 -10.26113 -9.70964 -9.33560 -8.96669 -8.55648 -8.38310 -7.97262 -6.13773 -4.23388 1.93806 2.42706 2.95762 3.21296 3.30319 3.32542 3.75661 3.95935 4.30285 4.52994 4.69691 4.83347 4.88782 4.96300 5.08443 5.15607 5.24747 5.29852 5.45835 5.61275 5.88024 5.94265 6.03053 6.19282 6.28548 6.46660 6.53006 6.70154 6.87854 7.06469 7.23886 7.36019 7.46416 7.61028 7.75154 8.28919 8.35510 8.78750 8.89829 9.44409 10.93809 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.023288 B = 0.004410 C = 0.004030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.068247 B = 6347.842848 C = 6946.964009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.354 6.354 3 C 0.495 3.505 4 O -0.506 6.506 5 C -0.144 4.144 6 H 0.149 0.851 7 C -0.115 4.115 8 C -0.148 4.148 9 H 0.136 0.864 10 C 0.532 3.468 11 O -0.561 6.561 12 N -0.684 5.684 13 C 0.164 3.836 14 C 0.028 3.972 15 C -0.506 4.506 16 H 0.061 0.939 17 C 0.078 3.922 18 N -0.870 5.870 19 Si 0.888 3.112 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.273 1.273 23 C -0.211 4.211 24 C -0.152 4.152 25 H 0.101 0.899 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.118 0.882 29 H 0.110 0.890 30 H 0.407 0.593 31 H 0.069 0.931 32 H 0.038 0.962 33 H 0.262 0.738 34 H 0.066 0.934 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.784 -7.302 0.575 14.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.270 6.270 3 C 0.339 3.661 4 O -0.394 6.394 5 C -0.164 4.164 6 H 0.167 0.833 7 C -0.153 4.153 8 C -0.169 4.169 9 H 0.154 0.846 10 C 0.316 3.684 11 O -0.441 6.441 12 N -0.333 5.333 13 C 0.040 3.960 14 C 0.027 3.973 15 C -0.544 4.544 16 H 0.079 0.921 17 C -0.127 4.127 18 N -0.505 5.505 19 Si 0.716 3.284 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.197 1.197 23 C -0.248 4.248 24 C -0.190 4.190 25 H 0.120 0.880 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.137 0.863 29 H 0.128 0.872 30 H 0.244 0.756 31 H 0.087 0.913 32 H 0.056 0.944 33 H 0.072 0.928 34 H 0.084 0.916 35 H 0.096 0.904 36 H 0.101 0.899 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -12.422 -7.668 0.210 14.600 hybrid contribution -0.340 0.884 1.096 1.448 sum -12.762 -6.784 1.306 14.512 Atomic orbital electron populations 1.23283 0.76276 1.03692 1.02613 1.86501 1.23340 1.33128 1.84034 1.22640 0.90402 0.81235 0.71852 1.90667 1.66897 1.36398 1.45456 1.21674 0.87774 1.00521 1.06402 0.83323 1.23067 1.02576 0.99559 0.90078 1.22380 0.98297 0.94751 1.01449 0.84596 1.19305 0.84479 0.83558 0.81038 1.90651 1.66282 1.40539 1.46623 1.45864 1.25219 1.10635 1.51541 1.20904 0.84217 0.98416 0.92413 1.19027 0.97663 0.89539 0.91075 1.20303 1.06925 1.32585 0.94559 0.92051 1.24979 0.94657 0.94695 0.98367 1.69977 1.15219 1.32601 1.32696 0.86655 0.77473 0.80530 0.83773 1.20557 1.21153 1.19742 1.23091 1.02138 0.99956 0.99617 1.22500 0.90664 1.02630 1.03182 0.88038 0.91860 0.91830 0.86331 0.87184 0.75640 0.91289 0.94419 0.92797 0.91572 0.90351 0.89896 0.91664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 10.56 101.05 1.07 1.36 16 2 O -0.35 -4.15 10.57 -39.26 -0.41 -4.56 16 3 C 0.50 6.67 7.74 36.01 0.28 6.95 16 4 O -0.51 -7.86 16.01 -18.75 -0.30 -8.16 16 5 C -0.14 -1.94 5.82 -91.74 -0.53 -2.48 16 6 H 0.15 2.03 7.67 -51.93 -0.40 1.64 16 7 C -0.12 -1.44 9.93 -26.73 -0.27 -1.71 16 8 C -0.15 -2.20 5.70 -91.73 -0.52 -2.73 16 9 H 0.14 1.92 7.67 -51.93 -0.40 1.52 16 10 C 0.53 10.07 7.61 -10.98 -0.08 9.99 16 11 O -0.56 -12.25 16.26 5.56 0.09 -12.16 16 12 N -0.68 -13.65 5.33 -60.29 -0.32 -13.97 16 13 C 0.16 3.66 5.75 -4.04 -0.02 3.63 16 14 C 0.03 0.64 1.70 -155.66 -0.27 0.37 16 15 C -0.51 -12.55 7.44 -34.44 -0.26 -12.80 16 16 H 0.06 1.49 7.82 -52.49 -0.41 1.08 16 17 C 0.08 2.00 5.39 -17.82 -0.10 1.90 16 18 N -0.87 -23.43 12.97 55.43 0.72 -22.71 16 19 Si 0.89 19.86 29.55 -169.99 -5.02 14.84 16 20 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 21 H -0.29 -6.49 7.11 56.52 0.40 -6.08 16 22 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 23 C -0.21 -4.37 9.88 -26.73 -0.26 -4.64 16 24 C -0.15 -3.41 9.51 -26.73 -0.25 -3.67 16 25 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 27 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 28 H 0.12 1.47 8.14 -51.93 -0.42 1.05 16 29 H 0.11 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.41 7.72 7.46 -40.82 -0.30 7.42 16 31 H 0.07 1.73 8.14 -51.93 -0.42 1.31 16 32 H 0.04 0.82 7.95 -51.93 -0.41 0.40 16 33 H 0.26 6.82 8.32 -40.82 -0.34 6.48 16 34 H 0.07 1.26 8.08 -51.93 -0.42 0.84 16 35 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 36 H 0.08 1.98 8.14 -51.93 -0.42 1.56 16 37 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 LS Contribution 327.27 15.07 4.93 4.93 Total: -1.00 -29.83 327.27 -6.82 -36.65 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -5.28 Total: 8.95 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: -1.22 Total: -3.81 kcal Atomic # 7 Polarization: -37.08 SS G_CDS: 0.40 Total: -36.68 kcal Atomic # 8 Polarization: -24.25 SS G_CDS: -0.62 Total: -24.88 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.02 Total: 14.84 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.83 -6.82 -36.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337190217.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.187 kcal (2) G-P(sol) polarization free energy of solvation -29.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds