Wall clock time and date at job start Mon Mar 30 2020 00:36:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45206 * 109.46777 * 2 1 4 4 C 1.34899 * 116.99849 * 179.97438 * 3 2 1 5 5 O 1.21621 * 119.99770 * 359.97438 * 4 3 2 6 6 C 1.46472 * 119.99841 * 179.97438 * 4 3 2 7 7 C 1.36633 * 125.99579 * 180.02562 * 6 4 3 8 8 C 1.40313 * 106.70585 * 179.97438 * 7 6 4 9 9 C 1.35166 * 107.12115 * 359.97438 * 8 7 6 10 10 C 1.50704 * 125.60914 * 180.02562 * 9 8 7 11 11 N 1.46900 * 109.47073 * 89.99868 * 10 9 8 12 12 C 1.46905 * 110.99799 * 180.02562 * 11 10 9 13 13 C 1.52994 * 109.47009 * 180.02562 * 12 11 10 14 14 C 1.50705 * 109.47123 * 179.97438 * 13 12 11 15 15 H 1.07996 * 119.99810 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00087 * 180.02562 * 14 13 12 17 17 N 1.31517 * 120.00119 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 120.00175 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.46744 * 359.97438 * 18 16 14 20 20 H 1.48492 * 109.47075 * 119.99866 * 18 16 14 21 21 H 1.48497 * 109.46894 * 240.00244 * 18 16 14 22 22 O 1.33919 * 108.78686 * 359.75846 * 9 8 7 23 23 H 1.09001 * 109.47362 * 60.00671 * 1 2 3 24 24 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47486 * 299.99948 * 1 2 3 26 26 H 1.09000 * 109.47486 * 240.00051 * 2 1 3 27 27 H 1.09001 * 109.47362 * 119.99329 * 2 1 3 28 28 H 1.08007 * 126.65224 * 359.97438 * 7 6 4 29 29 H 1.07997 * 126.43611 * 180.02562 * 8 7 6 30 30 H 1.09003 * 109.47308 * 210.00368 * 10 9 8 31 31 H 1.08998 * 109.46716 * 330.00221 * 10 9 8 32 32 H 1.00899 * 110.99818 * 303.95311 * 11 10 9 33 33 H 1.09001 * 109.47178 * 300.00025 * 12 11 10 34 34 H 1.09001 * 109.47132 * 59.99941 * 12 11 10 35 35 H 1.09001 * 109.47170 * 300.00029 * 13 12 11 36 36 H 1.09001 * 109.47223 * 59.99995 * 13 12 11 37 37 H 0.96991 * 120.00394 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3513 1.5458 0.0005 5 8 4.0921 0.5813 0.0015 6 6 3.9110 2.8994 0.0000 7 6 5.2395 3.2190 0.0000 8 6 5.3172 4.6200 -0.0012 9 6 4.0495 5.0889 -0.0024 10 6 3.6516 6.5424 -0.0045 11 7 3.5230 7.0129 -1.3902 12 6 3.1358 8.4294 -1.4313 13 6 3.0114 8.8820 -2.8875 14 6 2.6137 10.3350 -2.9298 15 1 2.4641 10.8808 -2.0100 16 6 2.4397 10.9671 -4.1427 17 7 2.6213 10.3022 -5.2628 18 14 1.9459 12.7679 -4.1951 19 1 1.8049 13.2829 -2.8095 20 1 2.9892 13.5466 -4.9094 21 1 0.6505 12.9054 -4.9080 22 8 3.2052 4.0494 -0.0074 23 1 -0.3634 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5137 0.8900 28 1 6.0690 2.5273 0.0007 29 1 6.2203 5.2122 -0.0020 30 1 2.6970 6.6586 0.5088 31 1 4.4139 7.1285 0.5089 32 1 4.3760 6.8564 -1.9058 33 1 2.1778 8.5591 -0.9279 34 1 3.8948 9.0283 -0.9279 35 1 3.9693 8.7523 -3.3914 36 1 2.2523 8.2831 -3.3906 37 1 2.4985 10.7468 -6.1160 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346339675.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:36:49 Heat of formation + Delta-G solvation = -80.289564 kcal Electronic energy + Delta-G solvation = -19085.583655 eV Core-core repulsion = 15829.565264 eV Total energy + Delta-G solvation = -3256.018391 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.84252 -40.39965 -36.91454 -36.28967 -33.40967 -33.00820 -32.11560 -31.08799 -29.00351 -26.24074 -24.18880 -23.33494 -22.43018 -21.59806 -20.77202 -20.44028 -18.63223 -17.19897 -17.06623 -16.42404 -16.05231 -16.02771 -14.78362 -14.49645 -14.31719 -14.00958 -13.81359 -13.60762 -13.47457 -13.12004 -12.98409 -12.66472 -12.27096 -12.17265 -11.92660 -11.70842 -11.12071 -11.08106 -10.97868 -10.83911 -10.57802 -10.20487 -10.10038 -9.52588 -9.21132 -8.77667 -8.39472 -8.03305 -6.03109 -4.06280 0.67688 2.05837 2.11830 2.72165 2.80270 3.29417 3.36957 3.40509 4.30949 4.42551 4.60665 4.62689 4.67165 4.70891 4.85494 4.94766 5.22985 5.30105 5.33070 5.40164 5.43833 5.48049 5.64689 5.70283 5.73306 6.06258 6.15057 6.20039 6.25599 6.75731 6.86948 7.25821 7.43936 7.62474 7.69825 7.83682 8.01702 8.37373 9.01043 9.57915 11.08310 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.026961 B = 0.002913 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.279286 B = 9611.187248 C =10217.713643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.062 3.938 3 O -0.346 6.346 4 C 0.558 3.442 5 O -0.495 6.495 6 C -0.079 4.079 7 C -0.097 4.097 8 C -0.228 4.228 9 C 0.061 3.939 10 C 0.125 3.875 11 N -0.687 5.687 12 C 0.066 3.934 13 C 0.024 3.976 14 C -0.523 4.523 15 H 0.056 0.944 16 C 0.058 3.942 17 N -0.892 5.892 18 Si 0.893 3.107 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.283 1.283 22 O -0.139 6.139 23 H 0.070 0.930 24 H 0.081 0.919 25 H 0.068 0.932 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.163 0.837 29 H 0.161 0.839 30 H 0.093 0.907 31 H 0.067 0.933 32 H 0.342 0.658 33 H 0.063 0.937 34 H 0.021 0.979 35 H 0.015 0.985 36 H 0.027 0.973 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.565 -17.692 12.817 21.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.011 4.011 3 O -0.262 6.262 4 C 0.404 3.596 5 O -0.385 6.385 6 C -0.130 4.130 7 C -0.117 4.117 8 C -0.247 4.247 9 C 0.007 3.993 10 C -0.004 4.004 11 N -0.320 5.320 12 C -0.061 4.061 13 C -0.013 4.013 14 C -0.561 4.561 15 H 0.074 0.926 16 C -0.144 4.144 17 N -0.531 5.531 18 Si 0.721 3.279 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.210 1.210 22 O -0.033 6.033 23 H 0.089 0.911 24 H 0.100 0.900 25 H 0.087 0.913 26 H 0.091 0.909 27 H 0.090 0.910 28 H 0.181 0.819 29 H 0.178 0.822 30 H 0.111 0.889 31 H 0.084 0.916 32 H 0.160 0.840 33 H 0.082 0.918 34 H 0.039 0.961 35 H 0.033 0.967 36 H 0.045 0.955 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.745 -18.207 12.562 22.133 hybrid contribution 0.792 1.208 0.056 1.445 sum 1.536 -17.000 12.618 21.226 Atomic orbital electron populations 1.21824 0.92250 1.03057 1.03979 1.23126 0.95706 0.79464 1.02810 1.86698 1.22944 1.32800 1.83790 1.19141 0.81034 0.86474 0.72981 1.90928 1.60687 1.39771 1.47070 1.20602 0.90384 0.83901 1.18067 1.21937 0.94906 0.96119 0.98716 1.21648 0.97927 0.94170 1.11000 1.23101 0.88074 0.89743 0.98390 1.20554 1.02516 0.83875 0.93425 1.60641 1.39506 1.22260 1.09547 1.22237 0.98726 0.83202 1.01967 1.19085 0.97705 0.95759 0.88767 1.21184 1.46944 0.95669 0.92353 0.92600 1.25011 0.95446 0.98209 0.95720 1.69979 1.49450 1.36346 0.97349 0.86516 0.78197 0.85086 0.78073 1.19745 1.21016 1.20952 1.84147 1.36600 1.13135 1.69436 0.91116 0.90036 0.91311 0.90855 0.90969 0.81931 0.82178 0.88884 0.91562 0.83982 0.91844 0.96061 0.96658 0.95487 0.92973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 10.29 37.16 0.38 -0.67 16 2 C 0.06 0.57 6.20 37.16 0.23 0.80 16 3 O -0.35 -4.38 10.23 -42.48 -0.43 -4.82 16 4 C 0.56 7.62 7.93 34.05 0.27 7.89 16 5 O -0.49 -7.20 16.66 -19.36 -0.32 -7.52 16 6 C -0.08 -1.09 7.18 -36.85 -0.26 -1.36 16 7 C -0.10 -1.16 10.62 -39.38 -0.42 -1.58 16 8 C -0.23 -2.64 10.77 -39.89 -0.43 -3.07 16 9 C 0.06 0.82 6.82 -35.40 -0.24 0.58 16 10 C 0.13 1.67 6.21 -4.97 -0.03 1.64 16 11 N -0.69 -11.68 6.49 -115.05 -0.75 -12.43 16 12 C 0.07 1.31 5.62 -3.82 -0.02 1.29 16 13 C 0.02 0.62 5.23 -27.88 -0.15 0.47 16 14 C -0.52 -14.54 9.11 -34.44 -0.31 -14.86 16 15 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 16 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 17 N -0.89 -26.68 13.29 55.43 0.74 -25.94 16 18 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 19 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 O -0.14 -2.07 10.67 4.72 0.05 -2.02 16 23 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 24 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.16 1.60 8.06 -52.48 -0.42 1.18 16 29 H 0.16 1.46 8.06 -52.49 -0.42 1.04 16 30 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.34 5.59 8.72 -39.29 -0.34 5.24 16 33 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 330.10 15.07 4.97 4.97 Total: -1.00 -31.89 330.10 -7.22 -39.11 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: -5.38 Total: -0.40 kcal Atomic # 6 Polarization: -6.25 SS G_CDS: -1.08 Total: -7.33 kcal Atomic # 7 Polarization: -38.36 SS G_CDS: -0.01 Total: -38.37 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: -0.71 Total: -14.36 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.89 -7.22 -39.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346339675.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.175 kcal (2) G-P(sol) polarization free energy of solvation -31.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds