Wall clock time and date at job start Mon Mar 30 2020 00:35:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46897 * 109.47145 * 2 1 4 4 C 1.46901 * 111.00187 * 298.16111 * 3 2 1 5 5 C 1.50701 * 109.47470 * 293.04232 * 4 3 2 6 6 H 1.07997 * 119.99310 * 354.95816 * 5 4 3 7 7 C 1.37879 * 120.00064 * 174.96099 * 5 4 3 8 8 N 1.31509 * 120.00179 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99725 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47234 * 60.00001 * 9 7 5 11 11 H 1.48501 * 109.47029 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47307 * 299.99966 * 9 7 5 13 13 C 1.46898 * 111.00227 * 62.11982 * 3 2 1 14 14 C 1.50699 * 109.47237 * 66.04180 * 13 3 2 15 15 C 1.34844 * 119.48178 * 90.00383 * 14 13 3 16 16 C 1.41727 * 119.01807 * 180.02562 * 15 14 13 17 17 O 1.22170 * 120.92486 * 180.02562 * 16 15 14 18 18 C 1.42233 * 118.14571 * 359.97438 * 16 15 14 19 19 O 1.36095 * 120.55650 * 179.97438 * 18 16 15 20 20 C 1.42893 * 116.99968 * 179.97438 * 19 18 16 21 21 C 1.35102 * 118.88618 * 0.25003 * 18 16 15 22 22 O 1.33774 * 119.48639 * 269.97985 * 14 13 3 23 23 H 1.09007 * 109.46309 * 299.79782 * 1 2 3 24 24 H 1.08998 * 109.46942 * 59.79158 * 1 2 3 25 25 H 1.08991 * 109.47204 * 179.79992 * 1 2 3 26 26 H 1.08995 * 109.46368 * 240.00005 * 2 1 3 27 27 H 1.08996 * 109.47123 * 120.00563 * 2 1 3 28 28 H 1.09009 * 109.47001 * 53.03816 * 4 3 2 29 29 H 1.08999 * 109.47583 * 173.03421 * 4 3 2 30 30 H 0.96999 * 120.00291 * 180.02562 * 8 7 5 31 31 H 1.09002 * 109.46987 * 306.04502 * 13 3 2 32 32 H 1.08997 * 109.47238 * 186.04723 * 13 3 2 33 33 H 1.07997 * 120.48706 * 0.02562 * 15 14 13 34 34 H 1.08993 * 109.47545 * 299.99872 * 20 19 18 35 35 H 1.09005 * 109.47177 * 60.00170 * 20 19 18 36 36 H 1.09000 * 109.47284 * 179.97438 * 20 19 18 37 37 H 1.08000 * 119.56971 * 179.72524 * 21 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5850 2.0971 -1.2091 5 6 2.2613 1.4983 -2.4154 6 1 3.0063 0.7266 -2.2891 7 6 1.9291 1.9357 -3.6800 8 7 1.0223 2.8757 -3.8336 9 14 2.7679 1.1939 -5.1752 10 1 2.5012 -0.2663 -5.2189 11 1 2.2381 1.8315 -6.4072 12 1 4.2319 1.4272 -5.0880 13 6 1.5906 2.0951 1.2122 14 6 2.2552 1.4798 2.4167 15 6 3.4484 1.9527 2.8302 16 6 4.0648 1.3664 3.9638 17 8 5.1453 1.7678 4.3688 18 6 3.3900 0.2985 4.6173 19 8 3.9375 -0.3004 5.7099 20 6 3.1943 -1.3648 6.3070 21 6 2.1989 -0.1151 4.1320 22 8 1.6520 0.4734 3.0592 23 1 -0.3632 0.5107 0.8919 24 1 -0.3633 0.5171 -0.8881 25 1 -0.3633 -1.0276 -0.0036 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 0.5040 2.0055 -1.3158 29 1 1.8540 3.1502 -1.1271 30 1 0.7883 3.1831 -4.7233 31 1 0.5083 2.0171 1.3150 32 1 1.8737 3.1450 1.1377 33 1 3.9271 2.7661 2.3054 34 1 2.2235 -0.9918 6.6332 35 1 3.0508 -2.1617 5.5772 36 1 3.7419 -1.7532 7.1656 37 1 1.6790 -0.9280 4.6170 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351470430.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:35:09 Heat of formation + Delta-G solvation = -55.853906 kcal Electronic energy + Delta-G solvation = -20476.354477 eV Core-core repulsion = 17221.395696 eV Total energy + Delta-G solvation = -3254.958781 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.00164 -39.28398 -37.97150 -37.43911 -33.12390 -32.46167 -31.51674 -29.54058 -28.06244 -27.66847 -25.29948 -23.94138 -23.40307 -22.30650 -19.67728 -18.86178 -18.49865 -16.77686 -16.64822 -16.17181 -15.65804 -15.42439 -15.24403 -14.86046 -14.74312 -14.39291 -14.10263 -13.80492 -13.55353 -13.08794 -12.63306 -12.24446 -11.97125 -11.85914 -11.73027 -11.42782 -11.22603 -11.06974 -10.81238 -10.62785 -10.19355 -9.99107 -9.68066 -9.44887 -9.26627 -8.50774 -8.25138 -7.45976 -6.10652 -4.12189 0.90088 1.19958 2.33809 2.95432 3.30009 3.34499 3.37595 3.49718 4.22563 4.35862 4.43516 4.55549 4.80836 4.82228 4.86063 5.16467 5.25323 5.25673 5.31730 5.61929 5.66223 5.71692 5.83289 5.89607 6.02109 6.16444 6.30264 6.55172 6.77164 6.88831 7.09385 7.22291 7.26227 7.66451 7.81773 7.88791 8.00672 8.37087 8.94811 9.52431 10.99903 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.031104 B = 0.004264 C = 0.004105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.991910 B = 6564.371426 C = 6819.179811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.057 3.943 3 N -0.527 5.527 4 C 0.189 3.811 5 C -0.509 4.509 6 H 0.064 0.936 7 C 0.058 3.942 8 N -0.898 5.898 9 Si 0.898 3.102 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.275 1.275 13 C 0.091 3.909 14 C 0.164 3.836 15 C -0.297 4.297 16 C 0.411 3.589 17 O -0.481 6.481 18 C -0.055 4.055 19 O -0.287 6.287 20 C 0.015 3.985 21 C -0.014 4.014 22 O -0.199 6.199 23 H 0.046 0.954 24 H 0.071 0.929 25 H 0.049 0.951 26 H 0.086 0.914 27 H 0.051 0.949 28 H 0.009 0.991 29 H 0.030 0.970 30 H 0.263 0.737 31 H 0.059 0.941 32 H 0.110 0.890 33 H 0.166 0.834 34 H 0.055 0.945 35 H 0.056 0.944 36 H 0.104 0.896 37 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.808 -7.122 15.809 17.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.071 4.071 3 N -0.252 5.252 4 C 0.065 3.935 5 C -0.547 4.547 6 H 0.082 0.918 7 C -0.144 4.144 8 N -0.537 5.537 9 Si 0.726 3.274 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.201 1.201 13 C -0.037 4.037 14 C 0.114 3.886 15 C -0.318 4.318 16 C 0.299 3.701 17 O -0.367 6.367 18 C -0.103 4.103 19 O -0.200 6.200 20 C -0.080 4.080 21 C -0.080 4.080 22 O -0.101 6.101 23 H 0.065 0.935 24 H 0.089 0.911 25 H 0.068 0.932 26 H 0.105 0.895 27 H 0.070 0.930 28 H 0.027 0.973 29 H 0.048 0.952 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.128 0.872 33 H 0.184 0.816 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.123 0.877 37 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -1.881 -6.858 15.870 17.390 hybrid contribution -0.636 -0.622 -0.718 1.143 sum -2.516 -7.480 15.151 17.084 Atomic orbital electron populations 1.22370 0.98858 1.01361 1.02069 1.22047 0.92574 0.90807 1.01691 1.62523 1.59084 1.02304 1.01268 1.19861 0.95143 0.93792 0.84703 1.21050 1.22269 1.21587 0.89816 0.91827 1.24955 0.95197 0.95164 0.99066 1.69928 1.31815 1.28880 1.23119 0.86554 0.79918 0.79234 0.81693 1.20266 1.21350 1.20094 1.21299 0.97902 0.98261 0.86212 1.22878 0.91769 0.83212 0.90707 1.22516 0.97643 1.09148 1.02543 1.17162 0.86754 0.81868 0.84293 1.90806 1.20251 1.60907 1.64705 1.21166 0.95570 1.00269 0.93263 1.86289 1.45792 1.48182 1.39747 1.23166 0.97365 0.88850 0.98610 1.23724 0.95259 0.99536 0.89456 1.82947 1.47626 1.42583 1.36951 0.93510 0.91057 0.93166 0.89531 0.93036 0.97300 0.95239 0.92764 0.92314 0.87153 0.81637 0.92603 0.92516 0.87732 0.79015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.04 9.26 37.16 0.34 -2.70 16 2 C 0.06 1.02 5.67 -3.82 -0.02 0.99 16 3 N -0.53 -10.22 4.69 -237.52 -1.11 -11.34 16 4 C 0.19 4.46 4.52 -4.98 -0.02 4.44 16 5 C -0.51 -13.44 8.40 -34.44 -0.29 -13.73 16 6 H 0.06 1.69 7.37 -52.49 -0.39 1.30 16 7 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -25.41 13.29 55.43 0.74 -24.67 16 9 Si 0.90 20.97 29.54 -169.99 -5.02 15.94 16 10 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 11 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 13 C 0.09 1.42 5.06 -4.98 -0.03 1.39 16 14 C 0.16 2.37 5.64 -35.51 -0.20 2.17 16 15 C -0.30 -4.62 9.61 -39.45 -0.38 -5.00 16 16 C 0.41 6.97 6.81 -36.72 -0.25 6.72 16 17 O -0.48 -9.81 17.75 -10.25 -0.18 -9.99 16 18 C -0.06 -0.78 6.72 -39.16 -0.26 -1.04 16 19 O -0.29 -3.80 10.36 -35.05 -0.36 -4.16 16 20 C 0.02 0.11 9.82 101.05 0.99 1.10 16 21 C -0.01 -0.16 10.43 29.62 0.31 0.15 16 22 O -0.20 -2.56 8.76 7.86 0.07 -2.49 16 23 H 0.05 0.68 6.33 -51.92 -0.33 0.36 16 24 H 0.07 1.35 6.29 -51.93 -0.33 1.02 16 25 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.09 1.71 6.98 -51.93 -0.36 1.34 16 27 H 0.05 0.83 6.51 -51.93 -0.34 0.49 16 28 H 0.01 0.23 6.01 -51.92 -0.31 -0.08 16 29 H 0.03 0.74 7.91 -51.93 -0.41 0.33 16 30 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 31 H 0.06 0.86 6.07 -51.93 -0.32 0.54 16 32 H 0.11 1.62 7.84 -51.93 -0.41 1.21 16 33 H 0.17 2.52 8.06 -52.49 -0.42 2.10 16 34 H 0.06 0.30 7.68 -51.93 -0.40 -0.10 16 35 H 0.06 0.33 7.66 -51.93 -0.40 -0.07 16 36 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.19 1.31 6.22 -52.49 -0.33 0.99 16 LS Contribution 308.65 15.07 4.65 4.65 Total: -1.00 -31.86 308.65 -5.84 -37.70 By element: Atomic # 1 Polarization: 3.10 SS G_CDS: -4.71 Total: -1.61 kcal Atomic # 6 Polarization: -4.13 SS G_CDS: 0.10 Total: -4.03 kcal Atomic # 7 Polarization: -35.63 SS G_CDS: -0.38 Total: -36.01 kcal Atomic # 8 Polarization: -16.16 SS G_CDS: -0.48 Total: -16.64 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -31.86 -5.84 -37.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351470430.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.158 kcal (2) G-P(sol) polarization free energy of solvation -31.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds