Wall clock time and date at job start Mon Mar 30 2020 00:35:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46897 * 109.47145 * 2 1 4 4 C 1.46901 * 111.00187 * 298.16111 * 3 2 1 5 5 C 1.50701 * 109.47470 * 293.04232 * 4 3 2 6 6 H 1.07997 * 119.99310 * 354.95816 * 5 4 3 7 7 C 1.37879 * 120.00064 * 174.96099 * 5 4 3 8 8 N 1.31509 * 120.00179 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99725 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47234 * 60.00001 * 9 7 5 11 11 H 1.48501 * 109.47029 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47307 * 299.99966 * 9 7 5 13 13 C 1.46898 * 111.00227 * 62.11982 * 3 2 1 14 14 C 1.50699 * 109.47237 * 66.04180 * 13 3 2 15 15 C 1.34844 * 119.48178 * 90.00383 * 14 13 3 16 16 C 1.41727 * 119.01807 * 180.02562 * 15 14 13 17 17 O 1.22170 * 120.92486 * 180.02562 * 16 15 14 18 18 C 1.42233 * 118.14571 * 359.97438 * 16 15 14 19 19 O 1.36095 * 120.55650 * 179.97438 * 18 16 15 20 20 C 1.42893 * 116.99968 * 179.97438 * 19 18 16 21 21 C 1.35102 * 118.88618 * 0.25003 * 18 16 15 22 22 O 1.33774 * 119.48639 * 269.97985 * 14 13 3 23 23 H 1.09007 * 109.46309 * 299.79782 * 1 2 3 24 24 H 1.08998 * 109.46942 * 59.79158 * 1 2 3 25 25 H 1.08991 * 109.47204 * 179.79992 * 1 2 3 26 26 H 1.08995 * 109.46368 * 240.00005 * 2 1 3 27 27 H 1.08996 * 109.47123 * 120.00563 * 2 1 3 28 28 H 1.09009 * 109.47001 * 53.03816 * 4 3 2 29 29 H 1.08999 * 109.47583 * 173.03421 * 4 3 2 30 30 H 0.96999 * 120.00291 * 180.02562 * 8 7 5 31 31 H 1.09002 * 109.46987 * 306.04502 * 13 3 2 32 32 H 1.08997 * 109.47238 * 186.04723 * 13 3 2 33 33 H 1.07997 * 120.48706 * 0.02562 * 15 14 13 34 34 H 1.08993 * 109.47545 * 299.99872 * 20 19 18 35 35 H 1.09005 * 109.47177 * 60.00170 * 20 19 18 36 36 H 1.09000 * 109.47284 * 179.97438 * 20 19 18 37 37 H 1.08000 * 119.56971 * 179.72524 * 21 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5850 2.0971 -1.2091 5 6 2.2613 1.4983 -2.4154 6 1 3.0063 0.7266 -2.2891 7 6 1.9291 1.9357 -3.6800 8 7 1.0223 2.8757 -3.8336 9 14 2.7679 1.1939 -5.1752 10 1 2.5012 -0.2663 -5.2189 11 1 2.2381 1.8315 -6.4072 12 1 4.2319 1.4272 -5.0880 13 6 1.5906 2.0951 1.2122 14 6 2.2552 1.4798 2.4167 15 6 3.4484 1.9527 2.8302 16 6 4.0648 1.3664 3.9638 17 8 5.1453 1.7678 4.3688 18 6 3.3900 0.2985 4.6173 19 8 3.9375 -0.3004 5.7099 20 6 3.1943 -1.3648 6.3070 21 6 2.1989 -0.1151 4.1320 22 8 1.6520 0.4734 3.0592 23 1 -0.3632 0.5107 0.8919 24 1 -0.3633 0.5171 -0.8881 25 1 -0.3633 -1.0276 -0.0036 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 0.5040 2.0055 -1.3158 29 1 1.8540 3.1502 -1.1271 30 1 0.7883 3.1831 -4.7233 31 1 0.5083 2.0171 1.3150 32 1 1.8737 3.1450 1.1377 33 1 3.9271 2.7661 2.3054 34 1 2.2235 -0.9918 6.6332 35 1 3.0508 -2.1617 5.5772 36 1 3.7419 -1.7532 7.1656 37 1 1.6790 -0.9280 4.6170 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351470430.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:35:09 Heat of formation + Delta-G solvation = -77.835256 kcal Electronic energy + Delta-G solvation = -20477.307660 eV Core-core repulsion = 17221.395696 eV Total energy + Delta-G solvation = -3255.911964 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.12348 -40.30921 -39.14803 -38.90393 -34.88659 -33.96902 -32.63290 -31.02573 -29.35282 -28.64440 -26.83595 -25.12733 -24.86292 -23.73079 -21.19305 -19.81471 -19.58056 -18.38151 -17.88147 -17.60586 -16.84919 -16.69585 -16.52235 -16.23854 -15.91404 -15.64324 -15.30868 -15.07878 -14.93466 -14.61388 -14.07494 -13.59150 -13.41757 -13.11284 -12.94805 -12.75896 -12.55189 -12.47192 -12.38144 -12.27015 -11.90450 -11.54900 -11.34971 -10.91904 -10.58242 -10.48959 -9.33467 -9.02803 -8.17092 -6.24874 -0.24577 0.07410 1.24898 1.43903 1.45757 1.53199 2.11368 2.29596 2.43507 3.16833 3.24698 3.32516 3.41945 3.49607 4.02810 4.24715 4.27911 4.34366 4.38860 4.40169 4.48952 4.55529 4.63832 4.70987 4.75181 4.93901 4.99791 5.05896 5.24178 5.39058 5.53685 5.68702 6.03826 6.06756 6.08578 6.27540 6.54886 6.63637 6.89795 7.43902 8.92884 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.031104 B = 0.004264 C = 0.004105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.991910 B = 6564.371426 C = 6819.179811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.057 3.943 3 N -0.540 5.540 4 C 0.204 3.796 5 C -0.520 4.520 6 H 0.058 0.942 7 C 0.009 3.991 8 N -0.930 5.930 9 Si 0.959 3.041 10 H -0.268 1.268 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.092 3.908 14 C 0.180 3.820 15 C -0.307 4.307 16 C 0.395 3.605 17 O -0.538 6.538 18 C -0.078 4.078 19 O -0.318 6.318 20 C 0.002 3.998 21 C 0.021 3.979 22 O -0.190 6.190 23 H 0.066 0.934 24 H 0.037 0.963 25 H 0.073 0.927 26 H 0.062 0.938 27 H 0.074 0.926 28 H -0.005 1.005 29 H 0.009 0.991 30 H 0.264 0.736 31 H 0.077 0.923 32 H 0.115 0.885 33 H 0.159 0.841 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.119 0.881 37 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.131 -9.260 16.813 19.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.070 4.070 3 N -0.265 5.265 4 C 0.079 3.921 5 C -0.559 4.559 6 H 0.076 0.924 7 C -0.190 4.190 8 N -0.571 5.571 9 Si 0.784 3.216 10 H -0.194 1.194 11 H -0.210 1.210 12 H -0.199 1.199 13 C -0.035 4.035 14 C 0.130 3.870 15 C -0.329 4.329 16 C 0.289 3.711 17 O -0.428 6.428 18 C -0.125 4.125 19 O -0.232 6.232 20 C -0.092 4.092 21 C -0.044 4.044 22 O -0.091 6.091 23 H 0.084 0.916 24 H 0.057 0.943 25 H 0.092 0.908 26 H 0.080 0.920 27 H 0.093 0.907 28 H 0.013 0.987 29 H 0.027 0.973 30 H 0.072 0.928 31 H 0.094 0.906 32 H 0.133 0.867 33 H 0.176 0.824 34 H 0.098 0.902 35 H 0.094 0.906 36 H 0.137 0.863 37 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -3.231 -9.025 16.886 19.417 hybrid contribution -0.291 -0.035 -0.929 0.975 sum -3.522 -9.060 15.957 18.685 Atomic orbital electron populations 1.22256 0.97380 1.02671 1.01345 1.22047 0.93780 0.89629 1.01580 1.62321 1.59864 1.03099 1.01177 1.19483 0.93890 0.92818 0.85956 1.21374 1.22047 1.21276 0.91169 0.92400 1.25724 0.95808 0.95572 1.01855 1.70034 1.33178 1.30165 1.23690 0.85597 0.78787 0.78807 0.78397 1.19350 1.21020 1.19918 1.21287 0.98962 0.98335 0.84944 1.22484 0.90895 0.83398 0.90267 1.22484 0.98182 1.09484 1.02701 1.17637 0.86327 0.82619 0.84534 1.90772 1.22521 1.63084 1.66437 1.20844 0.96528 1.00548 0.94548 1.86253 1.47563 1.49861 1.39547 1.23578 0.98300 0.87899 0.99373 1.24520 0.93927 0.98621 0.87355 1.82973 1.47302 1.41579 1.37221 0.91560 0.94347 0.90826 0.91980 0.90748 0.98714 0.97330 0.92753 0.90564 0.86725 0.82377 0.90243 0.90577 0.86298 0.73800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.36 9.26 71.98 0.67 -4.69 16 2 C 0.06 1.95 5.67 86.31 0.49 2.44 16 3 N -0.54 -20.62 4.69 -905.36 -4.24 -24.86 16 4 C 0.20 9.76 4.52 85.56 0.39 10.15 16 5 C -0.52 -27.81 8.40 25.60 0.21 -27.59 16 6 H 0.06 3.09 7.37 -2.91 -0.02 3.07 16 7 C 0.01 0.48 5.46 84.66 0.46 0.94 16 8 N -0.93 -53.29 13.29 21.45 0.28 -53.00 16 9 Si 0.96 43.05 29.54 68.60 2.03 45.08 16 10 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 11 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 12 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 13 C 0.09 2.74 5.06 85.56 0.43 3.17 16 14 C 0.18 4.86 5.64 24.91 0.14 5.00 16 15 C -0.31 -9.53 9.61 22.35 0.21 -9.31 16 16 C 0.40 13.55 6.81 24.13 0.16 13.71 16 17 O -0.54 -22.95 17.75 8.48 0.15 -22.80 16 18 C -0.08 -2.03 6.72 22.54 0.15 -1.88 16 19 O -0.32 -7.88 10.36 -80.28 -0.83 -8.71 16 20 C 0.00 0.02 9.82 113.37 1.11 1.14 16 21 C 0.02 0.38 10.43 67.10 0.70 1.08 16 22 O -0.19 -4.14 8.76 5.21 0.05 -4.09 16 23 H 0.07 1.72 6.33 -2.38 -0.02 1.70 16 24 H 0.04 1.42 6.29 -2.39 -0.02 1.40 16 25 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 26 H 0.06 2.40 6.98 -2.39 -0.02 2.39 16 27 H 0.07 2.17 6.51 -2.39 -0.02 2.16 16 28 H 0.00 -0.24 6.01 -2.38 -0.01 -0.26 16 29 H 0.01 0.44 7.91 -2.39 -0.02 0.42 16 30 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 31 H 0.08 2.04 6.07 -2.39 -0.01 2.02 16 32 H 0.11 3.31 7.84 -2.39 -0.02 3.29 16 33 H 0.16 5.02 8.06 -2.91 -0.02 4.99 16 34 H 0.08 0.49 7.68 -2.39 -0.02 0.47 16 35 H 0.08 0.53 7.66 -2.38 -0.02 0.51 16 36 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.25 1.73 6.22 -2.91 -0.02 1.71 16 Total: -1.00 -71.82 308.65 3.65 -68.17 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: 1.08 Total: 6.07 kcal Atomic # 6 Polarization: -10.98 SS G_CDS: 5.14 Total: -5.85 kcal Atomic # 7 Polarization: -73.91 SS G_CDS: -3.96 Total: -77.87 kcal Atomic # 8 Polarization: -34.97 SS G_CDS: -0.64 Total: -35.61 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Total: -71.82 3.65 -68.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351470430.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.666 kcal (2) G-P(sol) polarization free energy of solvation -71.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds