Wall clock time and date at job start Mon Mar 30 2020 00:47:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34230 * 116.99869 * 2 1 4 4 O 1.20821 * 120.00033 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00063 * 179.97438 * 3 2 1 6 6 H 1.09001 * 115.56385 * 34.28533 * 5 3 2 7 7 C 1.53034 * 117.50187 * 248.58013 * 5 3 2 8 8 C 1.52814 * 117.50254 * 179.97438 * 5 3 2 9 9 C 1.53188 * 117.71360 * 359.86351 * 8 5 3 10 10 C 1.53354 * 108.76595 * 158.87828 * 9 8 5 11 11 N 1.46834 * 108.81329 * 51.30593 * 10 9 8 12 12 C 1.34784 * 120.37834 * 123.10933 * 11 10 9 13 13 O 1.21688 * 119.99683 * 174.83127 * 12 11 10 14 14 C 1.46372 * 119.99943 * 354.83275 * 12 11 10 15 15 H 1.08002 * 120.00194 * 5.11506 * 14 12 11 16 16 C 1.40053 * 119.99925 * 185.12285 * 14 12 11 17 17 N 1.30665 * 119.99741 * 359.97438 * 16 14 12 18 18 Si 1.86802 * 119.99901 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.46824 * 89.99344 * 18 16 14 20 20 H 1.48493 * 109.46873 * 209.99642 * 18 16 14 21 21 H 1.48499 * 109.47084 * 329.99711 * 18 16 14 22 22 C 1.46843 * 119.24364 * 303.37808 * 11 10 9 23 23 C 1.52864 * 109.07695 * 56.58201 * 22 11 10 24 24 H 1.08999 * 109.46577 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47270 * 300.00445 * 1 2 3 26 26 H 1.08993 * 109.46772 * 60.00868 * 1 2 3 27 27 H 1.09004 * 117.50473 * 145.04192 * 7 5 3 28 28 H 1.09000 * 117.50127 * 359.97438 * 7 5 3 29 29 H 1.08998 * 109.58544 * 39.09432 * 9 8 5 30 30 H 1.08997 * 109.58599 * 278.66134 * 9 8 5 31 31 H 1.09000 * 109.57660 * 291.50595 * 10 9 8 32 32 H 1.08996 * 109.57680 * 171.10939 * 10 9 8 33 33 H 0.97000 * 119.99883 * 180.02562 * 17 16 14 34 34 H 1.08999 * 109.58218 * 176.41880 * 22 11 10 35 35 H 1.09001 * 109.58024 * 296.82139 * 22 11 10 36 36 H 1.09001 * 109.66884 * 189.04542 * 23 22 11 37 37 H 1.09000 * 109.56431 * 68.72873 * 23 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 4.0788 0.4881 -0.5530 7 6 4.2456 1.8072 1.2644 8 6 4.2001 2.6655 -0.0001 9 6 3.2615 3.8761 -0.0045 10 6 4.0283 5.0968 0.5188 11 7 5.2865 5.2213 -0.2278 12 6 5.5745 6.3572 -0.8936 13 8 6.6581 6.4892 -1.4313 14 6 4.5838 7.4321 -0.9698 15 1 3.6552 7.3502 -0.4245 16 6 4.8401 8.5666 -1.7500 17 7 5.9638 8.6657 -2.4094 18 14 3.5755 9.9380 -1.8478 19 1 3.8329 10.9264 -0.7698 20 1 3.6743 10.6090 -3.1688 21 1 2.2140 9.3685 -1.6824 22 6 6.2248 4.0919 -0.2457 23 6 5.5054 2.8531 -0.7793 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5137 -0.8900 27 1 5.2050 1.3707 1.5422 28 1 3.6039 2.1007 2.0952 29 1 2.4061 3.6776 0.6412 30 1 2.9180 4.0685 -1.0209 31 1 4.2441 4.9655 1.5791 32 1 3.4276 5.9947 0.3747 33 1 6.1414 9.4517 -2.9495 34 1 7.0693 4.3287 -0.8929 35 1 6.5808 3.8966 0.7659 36 1 6.1389 1.9759 -0.6478 37 1 5.2830 2.9878 -1.8378 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408313225.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:50 Heat of formation + Delta-G solvation = -88.709566 kcal Electronic energy + Delta-G solvation = -20769.678758 eV Core-core repulsion = 17513.295248 eV Total energy + Delta-G solvation = -3256.383510 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.85341 -38.96427 -37.16821 -36.14030 -34.06141 -32.47800 -30.75697 -29.29405 -27.99447 -26.22841 -24.32004 -22.99037 -22.73836 -20.56971 -19.80172 -18.17511 -17.67264 -16.67441 -16.44777 -16.08682 -15.65347 -14.66806 -14.46020 -14.16992 -14.01580 -13.68425 -13.28439 -13.07697 -12.91495 -12.54464 -12.25151 -12.01074 -11.74288 -11.59168 -11.18936 -11.10147 -10.93438 -10.89261 -10.73321 -10.59247 -10.25530 -10.15984 -9.72807 -9.68156 -9.61271 -8.82020 -7.53351 -7.14229 -6.16327 -4.60379 2.07458 2.58092 3.16421 3.23375 3.26818 3.73859 4.12232 4.54476 4.58678 4.62979 4.73034 4.80932 4.93626 4.99796 5.04207 5.24081 5.34152 5.59910 5.66995 5.73022 5.77913 5.87441 5.93700 6.05642 6.21582 6.25439 6.31165 6.54913 6.55430 6.64901 6.72091 6.90112 7.50218 7.70053 7.76295 8.19788 8.40682 9.06199 9.48341 10.61349 10.80097 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.025397 B = 0.005027 C = 0.004393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.232749 B = 5569.075411 C = 6372.788439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.361 6.361 3 C 0.490 3.510 4 O -0.494 6.494 5 C -0.174 4.174 6 H 0.131 0.869 7 C -0.141 4.141 8 C -0.067 4.067 9 C -0.102 4.102 10 C 0.123 3.877 11 N -0.641 5.641 12 C 0.559 3.441 13 O -0.580 6.580 14 C -0.544 4.544 15 H 0.073 0.927 16 C 0.088 3.912 17 N -0.769 5.769 18 Si 0.905 3.095 19 H -0.272 1.272 20 H -0.280 1.280 21 H -0.264 1.264 22 C 0.125 3.875 23 C -0.098 4.098 24 H 0.098 0.902 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.108 0.892 28 H 0.100 0.900 29 H 0.089 0.911 30 H 0.070 0.930 31 H 0.040 0.960 32 H 0.095 0.905 33 H 0.268 0.732 34 H 0.086 0.914 35 H 0.042 0.958 36 H 0.065 0.935 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.120 -15.757 6.141 18.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.278 6.278 3 C 0.334 3.666 4 O -0.381 6.381 5 C -0.193 4.193 6 H 0.149 0.851 7 C -0.178 4.178 8 C -0.067 4.067 9 C -0.141 4.141 10 C -0.002 4.002 11 N -0.379 5.379 12 C 0.365 3.635 13 O -0.463 6.463 14 C -0.581 4.581 15 H 0.091 0.909 16 C -0.131 4.131 17 N -0.398 5.398 18 Si 0.729 3.271 19 H -0.197 1.197 20 H -0.205 1.205 21 H -0.188 1.188 22 C 0.001 3.999 23 C -0.136 4.136 24 H 0.117 0.883 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.127 0.873 28 H 0.118 0.882 29 H 0.107 0.893 30 H 0.088 0.912 31 H 0.058 0.942 32 H 0.113 0.887 33 H 0.078 0.922 34 H 0.105 0.895 35 H 0.060 0.940 36 H 0.084 0.916 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.624 -15.258 5.709 17.987 hybrid contribution -1.009 0.403 -0.086 1.090 sum -8.634 -14.855 5.623 18.078 Atomic orbital electron populations 1.23238 0.76545 1.03426 1.02614 1.86498 1.23196 1.33805 1.84292 1.22815 0.90623 0.81092 0.72090 1.90656 1.66953 1.35582 1.44922 1.21922 0.87817 1.02452 1.07155 0.85098 1.23143 1.01593 1.02190 0.90877 1.21728 0.97464 0.89281 0.98238 1.21920 0.96496 0.92319 1.03325 1.21490 0.86711 0.98200 0.93767 1.48113 1.19245 1.15056 1.55493 1.18248 0.87670 0.80485 0.77088 1.90580 1.25441 1.80271 1.49995 1.21006 1.03591 1.02377 1.31102 0.90857 1.25721 0.95202 0.98473 0.93738 1.70016 1.21840 1.26501 1.21433 0.86417 0.81558 0.81084 0.78018 1.19718 1.20488 1.18847 1.20947 0.93669 0.85714 0.99575 1.21566 0.93245 0.98979 0.99828 0.88318 0.91951 0.91865 0.87348 0.88201 0.89278 0.91151 0.94187 0.88694 0.92163 0.89542 0.93951 0.91616 0.91008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.56 101.05 1.07 1.38 16 2 O -0.36 -4.24 10.57 -39.26 -0.41 -4.66 16 3 C 0.49 6.63 7.72 36.01 0.28 6.91 16 4 O -0.49 -7.88 12.80 -18.75 -0.24 -8.12 16 5 C -0.17 -2.15 6.03 -91.85 -0.55 -2.70 16 6 H 0.13 1.36 8.14 -51.93 -0.42 0.94 16 7 C -0.14 -1.63 9.65 -26.77 -0.26 -1.89 16 8 C -0.07 -0.98 1.94 -154.47 -0.30 -1.28 16 9 C -0.10 -1.76 4.46 -26.45 -0.12 -1.88 16 10 C 0.12 2.38 6.35 -3.68 -0.02 2.36 16 11 N -0.64 -14.74 2.93 -174.67 -0.51 -15.25 16 12 C 0.56 16.08 7.61 -12.99 -0.10 15.98 16 13 O -0.58 -18.86 14.44 5.20 0.08 -18.79 16 14 C -0.54 -15.45 8.87 -35.63 -0.32 -15.76 16 15 H 0.07 1.91 5.61 -52.49 -0.29 1.62 16 16 C 0.09 2.48 5.50 -17.37 -0.10 2.38 16 17 N -0.77 -23.22 11.84 55.55 0.66 -22.56 16 18 Si 0.90 20.35 29.56 -169.99 -5.02 15.33 16 19 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 20 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 21 H -0.26 -5.77 7.11 56.52 0.40 -5.37 16 22 C 0.13 2.43 6.40 -3.92 -0.03 2.40 16 23 C -0.10 -1.52 5.81 -26.71 -0.16 -1.68 16 24 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 26 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 27 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.09 1.48 5.70 -51.93 -0.30 1.19 16 30 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 31 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.09 1.96 5.25 -51.93 -0.27 1.69 16 33 H 0.27 7.34 8.29 -40.82 -0.34 7.00 16 34 H 0.09 1.88 6.98 -51.93 -0.36 1.52 16 35 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.07 0.82 8.10 -51.93 -0.42 0.40 16 37 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 305.68 15.07 4.61 4.61 Total: -1.00 -35.05 305.68 -6.46 -41.51 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -5.01 Total: 1.70 kcal Atomic # 6 Polarization: 6.83 SS G_CDS: -0.60 Total: 6.23 kcal Atomic # 7 Polarization: -37.96 SS G_CDS: 0.15 Total: -37.81 kcal Atomic # 8 Polarization: -30.98 SS G_CDS: -0.58 Total: -31.56 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -35.05 -6.46 -41.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408313225.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.202 kcal (2) G-P(sol) polarization free energy of solvation -35.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds