Wall clock time and date at job start Mon Mar 30 2020 00:47:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34230 * 116.99869 * 2 1 4 4 O 1.20821 * 120.00033 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00063 * 179.97438 * 3 2 1 6 6 H 1.09001 * 115.56385 * 34.28533 * 5 3 2 7 7 C 1.53034 * 117.50187 * 248.58013 * 5 3 2 8 8 C 1.52814 * 117.50254 * 179.97438 * 5 3 2 9 9 C 1.53188 * 117.71360 * 359.86351 * 8 5 3 10 10 C 1.53354 * 108.76595 * 158.87828 * 9 8 5 11 11 N 1.46834 * 108.81329 * 51.30593 * 10 9 8 12 12 C 1.34784 * 120.37834 * 123.10933 * 11 10 9 13 13 O 1.21688 * 119.99683 * 174.83127 * 12 11 10 14 14 C 1.46372 * 119.99943 * 354.83275 * 12 11 10 15 15 H 1.08002 * 120.00194 * 5.11506 * 14 12 11 16 16 C 1.40053 * 119.99925 * 185.12285 * 14 12 11 17 17 N 1.30665 * 119.99741 * 359.97438 * 16 14 12 18 18 Si 1.86802 * 119.99901 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.46824 * 89.99344 * 18 16 14 20 20 H 1.48493 * 109.46873 * 209.99642 * 18 16 14 21 21 H 1.48499 * 109.47084 * 329.99711 * 18 16 14 22 22 C 1.46843 * 119.24364 * 303.37808 * 11 10 9 23 23 C 1.52864 * 109.07695 * 56.58201 * 22 11 10 24 24 H 1.08999 * 109.46577 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47270 * 300.00445 * 1 2 3 26 26 H 1.08993 * 109.46772 * 60.00868 * 1 2 3 27 27 H 1.09004 * 117.50473 * 145.04192 * 7 5 3 28 28 H 1.09000 * 117.50127 * 359.97438 * 7 5 3 29 29 H 1.08998 * 109.58544 * 39.09432 * 9 8 5 30 30 H 1.08997 * 109.58599 * 278.66134 * 9 8 5 31 31 H 1.09000 * 109.57660 * 291.50595 * 10 9 8 32 32 H 1.08996 * 109.57680 * 171.10939 * 10 9 8 33 33 H 0.97000 * 119.99883 * 180.02562 * 17 16 14 34 34 H 1.08999 * 109.58218 * 176.41880 * 22 11 10 35 35 H 1.09001 * 109.58024 * 296.82139 * 22 11 10 36 36 H 1.09001 * 109.66884 * 189.04542 * 23 22 11 37 37 H 1.09000 * 109.56431 * 68.72873 * 23 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 4.0788 0.4881 -0.5530 7 6 4.2456 1.8072 1.2644 8 6 4.2001 2.6655 -0.0001 9 6 3.2615 3.8761 -0.0045 10 6 4.0283 5.0968 0.5188 11 7 5.2865 5.2213 -0.2278 12 6 5.5745 6.3572 -0.8936 13 8 6.6581 6.4892 -1.4313 14 6 4.5838 7.4321 -0.9698 15 1 3.6552 7.3502 -0.4245 16 6 4.8401 8.5666 -1.7500 17 7 5.9638 8.6657 -2.4094 18 14 3.5755 9.9380 -1.8478 19 1 3.8329 10.9264 -0.7698 20 1 3.6743 10.6090 -3.1688 21 1 2.2140 9.3685 -1.6824 22 6 6.2248 4.0919 -0.2457 23 6 5.5054 2.8531 -0.7793 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5137 -0.8900 27 1 5.2050 1.3707 1.5422 28 1 3.6039 2.1007 2.0952 29 1 2.4061 3.6776 0.6412 30 1 2.9180 4.0685 -1.0209 31 1 4.2441 4.9655 1.5791 32 1 3.4276 5.9947 0.3747 33 1 6.1414 9.4517 -2.9495 34 1 7.0693 4.3287 -0.8929 35 1 6.5808 3.8966 0.7659 36 1 6.1389 1.9759 -0.6478 37 1 5.2830 2.9878 -1.8378 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408313225.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:50 Heat of formation + Delta-G solvation = -112.164079 kcal Electronic energy + Delta-G solvation = -20770.695822 eV Core-core repulsion = 17513.295248 eV Total energy + Delta-G solvation = -3257.400574 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.91020 -40.34872 -38.80301 -37.30236 -35.78798 -34.64348 -32.25250 -30.76980 -28.91792 -28.23070 -25.25503 -24.55735 -24.23760 -21.82085 -21.31416 -19.67161 -18.67669 -18.32530 -17.79254 -17.44559 -17.14699 -16.31355 -16.00447 -15.62095 -15.50698 -14.84597 -14.64927 -14.39195 -14.20859 -14.17346 -13.58027 -13.34097 -13.23183 -12.89437 -12.80445 -12.75884 -12.54195 -12.39528 -12.15141 -11.95992 -11.76685 -11.61150 -11.10220 -10.95266 -10.93710 -10.83257 -9.75456 -9.00590 -8.28903 -6.82829 1.05579 1.38015 1.39575 1.54372 1.69724 2.23611 2.45723 2.72790 2.89536 3.52287 3.63146 3.67676 3.79548 3.95041 4.07735 4.29574 4.33515 4.33836 4.42974 4.56394 4.60092 4.70833 4.80235 4.84357 4.88667 4.97801 5.00181 5.07816 5.14586 5.24448 5.40707 5.42811 5.51937 5.81881 6.16598 6.46769 6.76837 6.88686 7.43843 8.48169 8.68028 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.025397 B = 0.005027 C = 0.004393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.232749 B = 5569.075411 C = 6372.788439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.360 6.360 3 C 0.488 3.512 4 O -0.527 6.527 5 C -0.162 4.162 6 H 0.158 0.842 7 C -0.113 4.113 8 C -0.098 4.098 9 C -0.088 4.088 10 C 0.121 3.879 11 N -0.643 5.643 12 C 0.540 3.460 13 O -0.633 6.633 14 C -0.572 4.572 15 H 0.090 0.910 16 C 0.030 3.970 17 N -0.822 5.822 18 Si 0.992 3.008 19 H -0.259 1.259 20 H -0.272 1.272 21 H -0.252 1.252 22 C 0.120 3.880 23 C -0.084 4.084 24 H 0.133 0.867 25 H 0.063 0.937 26 H 0.057 0.943 27 H 0.140 0.860 28 H 0.105 0.895 29 H 0.098 0.902 30 H 0.035 0.965 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.274 0.726 34 H 0.052 0.948 35 H 0.070 0.930 36 H 0.109 0.891 37 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.638 -17.657 7.735 21.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.277 6.277 3 C 0.333 3.667 4 O -0.417 6.417 5 C -0.181 4.181 6 H 0.175 0.825 7 C -0.149 4.149 8 C -0.099 4.099 9 C -0.126 4.126 10 C -0.002 4.002 11 N -0.380 5.380 12 C 0.346 3.654 13 O -0.520 6.520 14 C -0.609 4.609 15 H 0.107 0.893 16 C -0.185 4.185 17 N -0.452 5.452 18 Si 0.812 3.188 19 H -0.184 1.184 20 H -0.197 1.197 21 H -0.175 1.175 22 C -0.003 4.003 23 C -0.122 4.122 24 H 0.151 0.849 25 H 0.081 0.919 26 H 0.075 0.925 27 H 0.158 0.842 28 H 0.123 0.877 29 H 0.116 0.884 30 H 0.054 0.946 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.084 0.916 34 H 0.070 0.930 35 H 0.088 0.912 36 H 0.127 0.873 37 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -9.173 -17.233 7.342 20.858 hybrid contribution -0.574 0.871 -0.540 1.175 sum -9.747 -16.362 6.803 20.223 Atomic orbital electron populations 1.23534 0.74880 1.05646 1.02403 1.86485 1.24825 1.32652 1.83698 1.23088 0.91202 0.81120 0.71261 1.90644 1.67742 1.36726 1.46552 1.22002 0.87304 1.00871 1.07901 0.82492 1.23315 1.02828 0.99112 0.89687 1.21475 0.96842 0.89660 1.01883 1.21684 0.97002 0.92705 1.01212 1.21617 0.85202 0.98679 0.94714 1.47984 1.20848 1.14607 1.54527 1.18614 0.87184 0.82282 0.77284 1.90524 1.27277 1.81856 1.52378 1.21529 1.04330 1.03195 1.31807 0.89251 1.26952 0.97543 1.01403 0.92589 1.70183 1.24615 1.27863 1.22555 0.85099 0.78343 0.76871 0.78512 1.18388 1.19668 1.17506 1.21148 0.92510 0.86070 1.00593 1.21401 0.94232 0.98428 0.98123 0.84919 0.91866 0.92451 0.84241 0.87661 0.88389 0.94572 0.91643 0.90698 0.91645 0.92965 0.91224 0.87305 0.93701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.56 113.37 1.20 1.62 16 2 O -0.36 -7.46 10.57 -51.41 -0.54 -8.00 16 3 C 0.49 12.06 7.72 71.24 0.55 12.61 16 4 O -0.53 -16.22 12.80 21.98 0.28 -15.93 16 5 C -0.16 -3.41 6.03 -11.59 -0.07 -3.48 16 6 H 0.16 2.53 8.14 -2.39 -0.02 2.51 16 7 C -0.11 -2.10 9.65 30.57 0.29 -1.80 16 8 C -0.10 -2.65 1.94 -52.16 -0.10 -2.75 16 9 C -0.09 -2.99 4.46 30.78 0.14 -2.86 16 10 C 0.12 4.71 6.35 86.43 0.55 5.26 16 11 N -0.64 -30.34 2.93 -824.75 -2.41 -32.76 16 12 C 0.54 32.55 7.61 86.36 0.66 33.21 16 13 O -0.63 -43.55 14.44 -4.31 -0.06 -43.62 16 14 C -0.57 -33.59 8.87 24.83 0.22 -33.37 16 15 H 0.09 4.77 5.61 -2.91 -0.02 4.76 16 16 C 0.03 1.72 5.50 85.31 0.47 2.19 16 17 N -0.82 -51.64 11.84 21.84 0.26 -51.38 16 18 Si 0.99 42.38 29.56 68.60 2.03 44.41 16 19 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 20 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 21 H -0.25 -10.11 7.11 99.48 0.71 -9.41 16 22 C 0.12 4.66 6.40 86.27 0.55 5.21 16 23 C -0.08 -2.48 5.81 30.61 0.18 -2.31 16 24 H 0.13 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.06 0.95 8.13 -2.39 -0.02 0.93 16 26 H 0.06 0.94 8.13 -2.39 -0.02 0.92 16 27 H 0.14 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.10 3.18 5.70 -2.39 -0.01 3.16 16 30 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.07 3.17 5.25 -2.39 -0.01 3.16 16 33 H 0.27 15.55 8.29 -92.71 -0.77 14.78 16 34 H 0.05 2.37 6.98 -2.39 -0.02 2.36 16 35 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 36 H 0.11 2.30 8.10 -2.39 -0.02 2.28 16 37 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -81.66 305.68 5.26 -76.40 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: 1.08 Total: 17.35 kcal Atomic # 6 Polarization: 8.91 SS G_CDS: 4.63 Total: 13.54 kcal Atomic # 7 Polarization: -81.98 SS G_CDS: -2.16 Total: -84.14 kcal Atomic # 8 Polarization: -67.23 SS G_CDS: -0.32 Total: -67.55 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Total: -81.66 5.26 -76.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408313225.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.763 kcal (2) G-P(sol) polarization free energy of solvation -81.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds