Wall clock time and date at job start Mon Mar 30 2020 00:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42903 * 114.00217 * 2 1 4 4 C 1.52995 * 109.47258 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.47253 * 64.99563 * 4 3 2 6 6 C 1.37091 * 119.99977 * 270.00103 * 5 4 3 7 7 H 1.08001 * 119.99820 * 145.14144 * 6 5 4 8 8 C 1.38953 * 120.00286 * 325.14328 * 6 5 4 9 9 N 1.31408 * 119.99738 * 337.44276 * 8 6 5 10 10 Si 1.86802 * 120.00183 * 157.44366 * 8 6 5 11 11 H 1.48493 * 109.46947 * 59.99594 * 10 8 6 12 12 H 1.48499 * 109.46893 * 179.97438 * 10 8 6 13 13 H 1.48504 * 109.46718 * 299.99931 * 10 8 6 14 14 C 1.34778 * 119.99764 * 89.99981 * 5 4 3 15 15 O 1.21294 * 120.00012 * 4.90353 * 14 5 4 16 16 C 1.50700 * 119.99837 * 184.89868 * 14 5 4 17 17 C 1.53005 * 109.46988 * 177.65787 * 16 14 5 18 18 C 1.50700 * 109.46988 * 179.97438 * 17 16 14 19 19 C 1.41379 * 126.57645 * 90.00023 * 18 17 16 20 20 C 1.34515 * 106.84280 * 180.26170 * 19 18 17 21 21 O 1.34311 * 108.41547 * 359.63445 * 20 19 18 22 22 C 1.34301 * 109.47784 * 0.38031 * 21 20 19 23 23 H 1.08993 * 109.47057 * 300.00722 * 1 2 3 24 24 H 1.09004 * 109.46802 * 60.00534 * 1 2 3 25 25 H 1.09002 * 109.46941 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46901 * 59.99214 * 3 2 1 27 27 H 1.09002 * 109.46787 * 299.99743 * 3 2 1 28 28 H 1.08995 * 109.47066 * 304.99859 * 4 3 2 29 29 H 1.09003 * 109.47313 * 184.99844 * 4 3 2 30 30 H 0.96998 * 120.00257 * 185.01928 * 9 8 6 31 31 H 1.08997 * 109.46968 * 57.66402 * 16 14 5 32 32 H 1.08999 * 109.47489 * 297.66097 * 16 14 5 33 33 H 1.08997 * 109.46764 * 60.00490 * 17 16 14 34 34 H 1.08999 * 109.47259 * 300.00451 * 17 16 14 35 35 H 1.07999 * 126.58470 * 0.02562 * 19 18 17 36 36 H 1.08000 * 125.79197 * 179.77720 * 20 19 18 37 37 H 1.07993 * 125.79258 * 179.79329 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5638 -1.2509 6 6 4.0980 -0.7992 -1.3344 7 1 3.8652 -1.3063 -2.2591 8 6 4.5204 -1.5282 -0.2295 9 7 5.2119 -0.9399 0.7205 10 14 4.1053 -3.3445 -0.0945 11 1 4.6891 -4.0728 -1.2494 12 1 4.6669 -3.8881 1.1681 13 1 2.6302 -3.5164 -0.0952 14 6 4.2634 1.3327 -2.3200 15 8 4.2424 2.5414 -2.2209 16 6 4.6103 0.6907 -3.6386 17 6 4.8332 1.7777 -4.6921 18 6 5.1807 1.1357 -6.0105 19 6 4.2732 0.7390 -7.0195 20 6 5.0054 0.2094 -8.0159 21 8 6.3016 0.2713 -7.6691 22 6 6.4135 0.8292 -6.4526 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 1.6886 1.8464 0.8899 27 1 1.6887 1.8463 -0.8900 28 1 3.8508 0.5685 0.8427 29 1 3.9785 2.1765 0.0902 30 1 5.5691 -1.4628 1.4553 31 1 3.7926 0.0422 -3.9531 32 1 5.5199 0.1006 -3.5273 33 1 5.6508 2.4262 -4.3775 34 1 3.9236 2.3678 -4.8034 35 1 3.1981 0.8384 -6.9936 36 1 4.6172 -0.1947 -8.9391 37 1 7.3368 1.0028 -5.9199 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457204630.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:49 Heat of formation + Delta-G solvation = -64.702355 kcal Electronic energy + Delta-G solvation = -20497.448379 eV Core-core repulsion = 17242.105900 eV Total energy + Delta-G solvation = -3255.342479 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.32048 -38.65372 -36.96397 -34.84451 -34.18039 -31.51300 -31.08748 -29.47502 -28.42712 -25.82202 -24.80949 -23.95038 -21.53632 -21.37336 -19.86531 -18.92697 -17.21872 -16.75314 -16.05407 -15.68499 -15.38483 -15.25999 -14.58603 -14.54735 -14.29374 -14.15479 -13.87673 -13.00959 -12.72711 -12.61323 -12.01528 -11.91304 -11.70236 -11.51457 -11.26493 -11.08131 -10.99088 -10.92145 -10.52691 -10.33024 -10.23316 -10.00013 -9.42227 -9.08495 -8.93427 -8.44248 -8.21643 -7.42791 -6.27246 -3.90067 1.96257 2.83135 3.21376 3.29007 3.33389 3.34994 3.94998 4.22823 4.54982 4.80736 4.99599 5.11651 5.21577 5.39085 5.68230 5.73063 5.75056 5.91165 5.94531 6.00389 6.06099 6.10153 6.18865 6.24785 6.34432 6.38812 6.53444 6.70554 6.75244 6.82595 6.88685 7.32643 7.33934 7.58054 7.86800 8.06566 8.45429 9.19306 9.59916 10.01445 10.76027 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.017522 B = 0.005565 C = 0.004972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.613522 B = 5030.690476 C = 5629.902379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.362 6.362 3 C 0.055 3.945 4 C 0.107 3.893 5 N -0.429 5.429 6 C -0.324 4.324 7 H 0.087 0.913 8 C 0.052 3.948 9 N -0.866 5.866 10 Si 0.914 3.086 11 H -0.276 1.276 12 H -0.286 1.286 13 H -0.271 1.271 14 C 0.465 3.535 15 O -0.614 6.614 16 C -0.110 4.110 17 C -0.035 4.035 18 C -0.166 4.166 19 C -0.207 4.207 20 C -0.053 4.053 21 O -0.183 6.183 22 C -0.048 4.048 23 H 0.029 0.971 24 H 0.031 0.969 25 H 0.076 0.924 26 H 0.038 0.962 27 H 0.037 0.963 28 H 0.117 0.883 29 H 0.071 0.929 30 H 0.269 0.731 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.145 0.855 36 H 0.198 0.802 37 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.259 0.538 -8.570 9.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.280 6.280 3 C -0.023 4.023 4 C -0.017 4.017 5 N -0.147 5.147 6 C -0.452 4.452 7 H 0.104 0.896 8 C -0.154 4.154 9 N -0.503 5.503 10 Si 0.742 3.258 11 H -0.201 1.201 12 H -0.212 1.212 13 H -0.196 1.196 14 C 0.255 3.745 15 O -0.502 6.502 16 C -0.150 4.150 17 C -0.073 4.073 18 C -0.167 4.167 19 C -0.226 4.226 20 C -0.120 4.120 21 O -0.079 6.079 22 C -0.115 4.115 23 H 0.048 0.952 24 H 0.050 0.950 25 H 0.095 0.905 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.135 0.865 29 H 0.089 0.911 30 H 0.079 0.921 31 H 0.095 0.905 32 H 0.103 0.897 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.163 0.837 36 H 0.214 0.786 37 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -2.883 0.798 -8.438 8.953 hybrid contribution -0.751 -0.804 0.299 1.140 sum -3.634 -0.006 -8.139 8.914 Atomic orbital electron populations 1.22643 0.83620 1.01678 0.98744 1.88171 1.17182 1.27623 1.94987 1.23026 0.96621 0.84320 0.98338 1.21526 0.89193 0.99248 0.91716 1.43342 1.55894 1.06293 1.09130 1.19238 1.45588 0.80648 0.99744 0.89563 1.25197 0.94379 0.99775 0.96019 1.69804 1.30703 1.36896 1.12926 0.86208 0.79395 0.82795 0.77448 1.20127 1.21207 1.19611 1.20445 0.80366 0.86711 0.86969 1.90501 1.58958 1.14758 1.85992 1.21294 1.03158 0.97976 0.92543 1.19753 1.02518 0.96670 0.88331 1.20696 0.92781 1.04725 0.98521 1.21793 1.00771 1.05171 0.94841 1.23918 0.80711 1.05996 1.01401 1.84029 1.28160 1.63671 1.32013 1.23899 1.00044 1.02492 0.85031 0.95229 0.95050 0.90499 0.94381 0.94480 0.86509 0.91061 0.92075 0.90533 0.89672 0.90810 0.91024 0.83720 0.78556 0.78228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 11.01 101.05 1.11 1.61 16 2 O -0.36 -7.87 10.18 -35.23 -0.36 -8.23 16 3 C 0.05 1.16 6.28 37.15 0.23 1.39 16 4 C 0.11 2.60 5.47 -4.04 -0.02 2.58 16 5 N -0.43 -10.91 2.52 -114.81 -0.29 -11.20 16 6 C -0.32 -8.37 8.23 -14.93 -0.12 -8.49 16 7 H 0.09 2.16 6.96 -52.49 -0.37 1.79 16 8 C 0.05 1.33 4.95 -17.47 -0.09 1.24 16 9 N -0.87 -23.23 11.34 55.50 0.63 -22.60 16 10 Si 0.91 20.35 29.61 -169.99 -5.03 15.32 16 11 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 12 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 13 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 14 C 0.47 11.35 7.62 -10.98 -0.08 11.26 16 15 O -0.61 -16.04 15.54 5.55 0.09 -15.96 16 16 C -0.11 -2.22 4.31 -27.88 -0.12 -2.34 16 17 C -0.03 -0.61 5.02 -27.88 -0.14 -0.75 16 18 C -0.17 -2.58 5.42 -104.74 -0.57 -3.15 16 19 C -0.21 -2.86 10.87 -39.70 -0.43 -3.30 16 20 C -0.05 -0.64 12.09 29.42 0.36 -0.29 16 21 O -0.18 -2.52 10.65 5.69 0.06 -2.46 16 22 C -0.05 -0.67 12.01 29.42 0.35 -0.32 16 23 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 25 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 26 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.12 3.05 5.37 -51.93 -0.28 2.77 16 29 H 0.07 1.73 7.36 -51.93 -0.38 1.35 16 30 H 0.27 6.86 8.32 -40.82 -0.34 6.52 16 31 H 0.08 1.51 7.68 -51.93 -0.40 1.12 16 32 H 0.08 1.73 8.10 -51.93 -0.42 1.31 16 33 H 0.07 1.32 8.07 -51.93 -0.42 0.90 16 34 H 0.07 1.29 8.12 -51.93 -0.42 0.87 16 35 H 0.14 1.79 8.06 -52.49 -0.42 1.37 16 36 H 0.20 1.57 8.06 -52.49 -0.42 1.14 16 37 H 0.20 2.30 8.06 -52.49 -0.42 1.87 16 LS Contribution 319.30 15.07 4.81 4.81 Total: -1.00 -30.82 319.30 -4.82 -35.64 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -5.20 Total: 5.23 kcal Atomic # 6 Polarization: -1.03 SS G_CDS: 0.48 Total: -0.55 kcal Atomic # 7 Polarization: -34.14 SS G_CDS: 0.34 Total: -33.80 kcal Atomic # 8 Polarization: -26.44 SS G_CDS: -0.21 Total: -26.65 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.03 Total: 15.32 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.82 -4.82 -35.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457204630.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.064 kcal (2) G-P(sol) polarization free energy of solvation -30.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds