Wall clock time and date at job start Mon Mar 30 2020 00:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34224 * 117.00137 * 2 1 4 4 O 1.20831 * 119.99870 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00215 * 179.97438 * 3 2 1 6 6 N 1.46496 * 109.47370 * 180.02562 * 5 3 2 7 7 C 1.36823 * 120.00113 * 270.00248 * 6 5 3 8 8 H 1.07998 * 119.99968 * 143.01247 * 7 6 5 9 9 C 1.39074 * 119.99778 * 323.01397 * 7 6 5 10 10 N 1.31345 * 119.99936 * 158.31329 * 9 7 6 11 11 Si 1.86798 * 120.00047 * 338.31133 * 9 7 6 12 12 H 1.48503 * 109.47001 * 95.53226 * 11 9 7 13 13 H 1.48495 * 109.47207 * 215.52921 * 11 9 7 14 14 H 1.48498 * 109.47234 * 335.53350 * 11 9 7 15 15 C 1.34779 * 120.00171 * 89.99924 * 6 5 3 16 16 O 1.21657 * 119.99753 * 354.96967 * 15 6 5 17 17 C 1.46951 * 120.00297 * 174.97126 * 15 6 5 18 18 C 1.33115 * 120.00164 * 184.88763 * 17 15 6 19 19 C 1.50699 * 120.00038 * 174.60843 * 18 17 15 20 20 C 1.53782 * 113.61830 * 216.31430 * 19 18 17 21 21 C 1.53946 * 87.02332 * 220.05120 * 20 19 18 22 22 C 1.53776 * 87.11250 * 25.36015 * 21 20 19 23 23 H 1.09007 * 109.47201 * 59.99709 * 1 2 3 24 24 H 1.08996 * 109.47469 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47119 * 299.99764 * 1 2 3 26 26 H 1.08998 * 109.46653 * 60.00350 * 5 3 2 27 27 H 1.09001 * 109.47065 * 300.00694 * 5 3 2 28 28 H 0.97002 * 119.99918 * 179.97438 * 10 9 7 29 29 H 1.08005 * 119.99447 * 4.61443 * 17 15 6 30 30 H 1.08001 * 120.00392 * 354.61357 * 18 17 15 31 31 H 1.09002 * 112.85013 * 347.51448 * 19 18 17 32 32 H 1.09002 * 113.61500 * 334.57276 * 20 19 18 33 33 H 1.08997 * 113.61732 * 105.46752 * 20 19 18 34 34 H 1.09009 * 113.53591 * 270.81199 * 21 20 19 35 35 H 1.08997 * 113.74465 * 139.94349 * 21 20 19 36 36 H 1.09001 * 113.61810 * 220.08962 * 22 21 20 37 37 H 1.08999 * 113.61252 * 89.18914 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 7 3.9817 2.6796 0.0011 7 6 4.1761 3.3360 -1.1836 8 1 3.8966 4.3749 -1.2775 9 6 4.7337 2.6652 -2.2668 10 7 4.5417 3.1135 -3.4864 11 14 5.7557 1.1268 -1.9873 12 1 4.8979 -0.0741 -2.1529 13 1 6.8645 1.0830 -2.9740 14 1 6.3169 1.1484 -0.6126 15 6 4.1724 3.3256 1.1685 16 8 3.9119 2.7716 2.2198 17 6 4.6949 4.6991 1.1715 18 6 4.9750 5.3022 2.3247 19 6 5.6237 6.6624 2.3256 20 6 6.6358 6.8616 3.4661 21 6 6.0746 8.2882 3.6072 22 6 4.7697 7.7517 2.9956 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 3.9563 0.7806 -0.8892 27 1 3.9557 0.7808 0.8908 28 1 4.9309 2.6458 -4.2419 29 1 4.8557 5.2177 0.2378 30 1 4.7376 4.8166 3.2597 31 1 6.0072 6.9491 1.3464 32 1 6.4458 6.2299 4.3338 33 1 7.6748 6.8305 3.1382 34 1 6.5827 9.0199 2.9789 35 1 5.9692 8.6182 4.6406 36 1 4.3042 8.4383 2.2884 37 1 4.0684 7.3639 3.7345 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492070350.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:46 Heat of formation + Delta-G solvation = -69.429419 kcal Electronic energy + Delta-G solvation = -20412.670462 eV Core-core repulsion = 17157.123002 eV Total energy + Delta-G solvation = -3255.547460 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.99783 -38.92323 -38.35430 -35.91668 -34.90020 -32.34717 -32.05943 -29.04460 -26.83481 -25.60386 -25.47326 -24.66036 -21.53060 -20.31328 -19.26837 -18.80744 -17.39307 -17.05892 -16.70202 -15.84749 -15.64545 -15.38238 -15.07594 -14.56566 -13.88757 -13.85958 -13.16854 -12.91648 -12.69231 -12.64474 -12.35020 -12.29903 -12.26333 -11.84757 -11.58934 -11.25268 -10.97275 -10.54743 -10.47935 -10.41566 -10.32835 -10.24557 -10.10877 -9.90525 -9.34220 -8.79721 -8.59042 -8.00570 -6.59713 -4.17403 2.08793 2.86884 2.94771 3.12975 3.15624 3.20145 3.98216 4.09996 4.37319 4.75713 4.80286 4.85005 4.92873 5.14313 5.37971 5.45757 5.46325 5.56121 5.65887 5.68461 5.77483 5.80198 5.85074 5.87115 5.94935 6.06378 6.07381 6.25531 6.31273 6.59469 6.85897 7.06256 7.13490 7.20606 7.92497 8.14232 8.41568 8.82203 9.18506 9.51476 10.50494 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.017515 B = 0.005906 C = 0.004914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.227727 B = 4739.635404 C = 5696.262035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.370 6.370 3 C 0.449 3.551 4 O -0.486 6.486 5 C 0.108 3.892 6 N -0.440 5.440 7 C -0.338 4.338 8 H 0.109 0.891 9 C 0.065 3.935 10 N -0.848 5.848 11 Si 0.861 3.139 12 H -0.269 1.269 13 H -0.279 1.279 14 H -0.255 1.255 15 C 0.515 3.485 16 O -0.598 6.598 17 C -0.156 4.156 18 C -0.105 4.105 19 C -0.083 4.083 20 C -0.132 4.132 21 C -0.143 4.143 22 C -0.132 4.132 23 H 0.059 0.941 24 H 0.094 0.906 25 H 0.058 0.942 26 H 0.104 0.896 27 H 0.112 0.888 28 H 0.278 0.722 29 H 0.132 0.868 30 H 0.117 0.883 31 H 0.096 0.904 32 H 0.082 0.918 33 H 0.067 0.933 34 H 0.078 0.922 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.959 1.351 7.405 7.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.287 6.287 3 C 0.290 3.710 4 O -0.371 6.371 5 C -0.017 4.017 6 N -0.159 5.159 7 C -0.465 4.465 8 H 0.127 0.873 9 C -0.144 4.144 10 N -0.482 5.482 11 Si 0.688 3.312 12 H -0.196 1.196 13 H -0.206 1.206 14 H -0.179 1.179 15 C 0.309 3.691 16 O -0.484 6.484 17 C -0.177 4.177 18 C -0.126 4.126 19 C -0.101 4.101 20 C -0.169 4.169 21 C -0.181 4.181 22 C -0.169 4.169 23 H 0.078 0.922 24 H 0.113 0.887 25 H 0.077 0.923 26 H 0.122 0.878 27 H 0.130 0.870 28 H 0.088 0.912 29 H 0.150 0.850 30 H 0.135 0.865 31 H 0.115 0.885 32 H 0.100 0.900 33 H 0.085 0.915 34 H 0.097 0.903 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.619 1.373 7.661 7.808 hybrid contribution 0.160 -0.803 -0.406 0.914 sum 0.780 0.570 7.255 7.319 Atomic orbital electron populations 1.23133 0.77565 1.02805 1.02268 1.86518 1.22669 1.34548 1.84992 1.24690 0.92762 0.81223 0.72364 1.90619 1.66511 1.36233 1.43723 1.21380 0.87063 0.88494 1.04808 1.43270 1.57467 1.08490 1.06718 1.19083 1.42065 0.98792 0.86607 0.87313 1.25409 0.96020 0.98193 0.94740 1.69734 1.39698 1.40628 0.98162 0.87152 0.81293 0.82808 0.79971 1.19559 1.20569 1.17891 1.18565 0.80128 0.87714 0.82739 1.90635 1.56441 1.69549 1.31759 1.22742 1.01230 0.94457 0.99239 1.23389 0.96194 0.94664 0.98310 1.21668 0.96608 0.92800 0.99050 1.22943 0.98661 0.96625 0.98695 1.22871 0.97521 0.96829 1.00850 1.22899 0.96486 0.97563 0.99998 0.92191 0.88732 0.92340 0.87838 0.86990 0.91189 0.85013 0.86465 0.88549 0.89984 0.91460 0.90338 0.91705 0.91395 0.89990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.54 10.56 101.05 1.07 1.61 16 2 O -0.37 -7.11 10.56 -39.24 -0.41 -7.53 16 3 C 0.45 10.26 8.02 36.00 0.29 10.55 16 4 O -0.49 -12.44 16.18 -18.75 -0.30 -12.74 16 5 C 0.11 2.47 4.76 -5.20 -0.02 2.44 16 6 N -0.44 -10.98 1.67 -117.50 -0.20 -11.18 16 7 C -0.34 -8.90 8.85 -15.01 -0.13 -9.03 16 8 H 0.11 3.02 7.04 -52.49 -0.37 2.65 16 9 C 0.06 1.68 5.32 -17.45 -0.09 1.59 16 10 N -0.85 -23.00 13.95 55.50 0.77 -22.23 16 11 Si 0.86 19.26 24.96 -169.99 -4.24 15.02 16 12 H -0.27 -5.71 6.69 56.52 0.38 -5.33 16 13 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 14 H -0.26 -5.67 7.11 56.52 0.40 -5.26 16 15 C 0.52 12.58 7.56 -12.73 -0.10 12.48 16 16 O -0.60 -15.41 15.86 5.23 0.08 -15.33 16 17 C -0.16 -3.26 8.91 -37.84 -0.34 -3.59 16 18 C -0.11 -1.85 8.79 -36.09 -0.32 -2.17 16 19 C -0.08 -1.15 4.00 -90.96 -0.36 -1.52 16 20 C -0.13 -1.55 7.64 -25.83 -0.20 -1.74 16 21 C -0.14 -1.48 8.09 -25.83 -0.21 -1.69 16 22 C -0.13 -1.60 7.63 -25.92 -0.20 -1.80 16 23 H 0.06 0.90 8.13 -51.93 -0.42 0.47 16 24 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 25 H 0.06 0.86 8.13 -51.93 -0.42 0.43 16 26 H 0.10 2.32 3.14 -51.93 -0.16 2.16 16 27 H 0.11 2.36 7.49 -51.93 -0.39 1.98 16 28 H 0.28 6.97 8.31 -40.82 -0.34 6.63 16 29 H 0.13 2.71 6.55 -52.48 -0.34 2.36 16 30 H 0.12 2.14 7.50 -52.49 -0.39 1.75 16 31 H 0.10 1.32 8.06 -51.93 -0.42 0.90 16 32 H 0.08 0.95 8.09 -51.93 -0.42 0.53 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.08 0.74 8.14 -51.92 -0.42 0.32 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.08 1.00 8.09 -51.93 -0.42 0.58 16 LS Contribution 315.50 15.07 4.75 4.75 Total: -1.00 -31.04 315.50 -5.20 -36.24 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -5.04 Total: 5.86 kcal Atomic # 6 Polarization: 7.74 SS G_CDS: -0.61 Total: 7.12 kcal Atomic # 7 Polarization: -33.98 SS G_CDS: 0.58 Total: -33.40 kcal Atomic # 8 Polarization: -34.96 SS G_CDS: -0.64 Total: -35.59 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -4.24 Total: 15.02 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.04 -5.20 -36.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492070350.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.194 kcal (2) G-P(sol) polarization free energy of solvation -31.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds