Wall clock time and date at job start Mon Mar 30 2020 00:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34224 * 117.00137 * 2 1 4 4 O 1.20831 * 119.99870 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00215 * 179.97438 * 3 2 1 6 6 N 1.46496 * 109.47370 * 180.02562 * 5 3 2 7 7 C 1.36823 * 120.00113 * 270.00248 * 6 5 3 8 8 H 1.07998 * 119.99968 * 143.01247 * 7 6 5 9 9 C 1.39074 * 119.99778 * 323.01397 * 7 6 5 10 10 N 1.31345 * 119.99936 * 158.31329 * 9 7 6 11 11 Si 1.86798 * 120.00047 * 338.31133 * 9 7 6 12 12 H 1.48503 * 109.47001 * 95.53226 * 11 9 7 13 13 H 1.48495 * 109.47207 * 215.52921 * 11 9 7 14 14 H 1.48498 * 109.47234 * 335.53350 * 11 9 7 15 15 C 1.34779 * 120.00171 * 89.99924 * 6 5 3 16 16 O 1.21657 * 119.99753 * 354.96967 * 15 6 5 17 17 C 1.46951 * 120.00297 * 174.97126 * 15 6 5 18 18 C 1.33115 * 120.00164 * 184.88763 * 17 15 6 19 19 C 1.50699 * 120.00038 * 174.60843 * 18 17 15 20 20 C 1.53782 * 113.61830 * 216.31430 * 19 18 17 21 21 C 1.53946 * 87.02332 * 220.05120 * 20 19 18 22 22 C 1.53776 * 87.11250 * 25.36015 * 21 20 19 23 23 H 1.09007 * 109.47201 * 59.99709 * 1 2 3 24 24 H 1.08996 * 109.47469 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47119 * 299.99764 * 1 2 3 26 26 H 1.08998 * 109.46653 * 60.00350 * 5 3 2 27 27 H 1.09001 * 109.47065 * 300.00694 * 5 3 2 28 28 H 0.97002 * 119.99918 * 179.97438 * 10 9 7 29 29 H 1.08005 * 119.99447 * 4.61443 * 17 15 6 30 30 H 1.08001 * 120.00392 * 354.61357 * 18 17 15 31 31 H 1.09002 * 112.85013 * 347.51448 * 19 18 17 32 32 H 1.09002 * 113.61500 * 334.57276 * 20 19 18 33 33 H 1.08997 * 113.61732 * 105.46752 * 20 19 18 34 34 H 1.09009 * 113.53591 * 270.81199 * 21 20 19 35 35 H 1.08997 * 113.74465 * 139.94349 * 21 20 19 36 36 H 1.09001 * 113.61810 * 220.08962 * 22 21 20 37 37 H 1.08999 * 113.61252 * 89.18914 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 7 3.9817 2.6796 0.0011 7 6 4.1761 3.3360 -1.1836 8 1 3.8966 4.3749 -1.2775 9 6 4.7337 2.6652 -2.2668 10 7 4.5417 3.1135 -3.4864 11 14 5.7557 1.1268 -1.9873 12 1 4.8979 -0.0741 -2.1529 13 1 6.8645 1.0830 -2.9740 14 1 6.3169 1.1484 -0.6126 15 6 4.1724 3.3256 1.1685 16 8 3.9119 2.7716 2.2198 17 6 4.6949 4.6991 1.1715 18 6 4.9750 5.3022 2.3247 19 6 5.6237 6.6624 2.3256 20 6 6.6358 6.8616 3.4661 21 6 6.0746 8.2882 3.6072 22 6 4.7697 7.7517 2.9956 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 3.9563 0.7806 -0.8892 27 1 3.9557 0.7808 0.8908 28 1 4.9309 2.6458 -4.2419 29 1 4.8557 5.2177 0.2378 30 1 4.7376 4.8166 3.2597 31 1 6.0072 6.9491 1.3464 32 1 6.4458 6.2299 4.3338 33 1 7.6748 6.8305 3.1382 34 1 6.5827 9.0199 2.9789 35 1 5.9692 8.6182 4.6406 36 1 4.3042 8.4383 2.2884 37 1 4.0684 7.3639 3.7345 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492070350.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:45 Heat of formation + Delta-G solvation = -87.790146 kcal Electronic energy + Delta-G solvation = -20413.466643 eV Core-core repulsion = 17157.123002 eV Total energy + Delta-G solvation = -3256.343641 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.75895 -40.52953 -39.60520 -37.63608 -36.80508 -34.11049 -33.81455 -30.71854 -28.20198 -27.29510 -26.43848 -26.20831 -23.09496 -21.91824 -20.64062 -20.36520 -19.13986 -18.80575 -18.43502 -17.49179 -17.23227 -17.11221 -16.29909 -16.06654 -15.68477 -15.37826 -14.78593 -14.59090 -14.40052 -14.22360 -13.74637 -13.53434 -13.40979 -13.28438 -13.01850 -12.95290 -12.55604 -12.32428 -11.94301 -11.85379 -11.75372 -11.60557 -11.39755 -11.31954 -11.13487 -10.64506 -10.17516 -9.89087 -8.58342 -6.21581 0.46894 1.08633 1.17329 1.33178 1.42548 1.57735 2.11789 2.28964 2.59179 2.95661 3.74606 3.76647 3.85305 3.88317 3.90771 4.05919 4.09762 4.21954 4.27219 4.28491 4.37471 4.61575 4.68110 4.88402 4.90208 4.90610 5.12838 5.13907 5.14387 5.22277 5.25186 5.55012 5.61519 5.71385 5.97129 6.09557 6.68233 6.84017 7.22603 7.59123 8.55716 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.017515 B = 0.005906 C = 0.004914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.227727 B = 4739.635404 C = 5696.262035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.364 6.364 3 C 0.451 3.549 4 O -0.524 6.524 5 C 0.099 3.901 6 N -0.451 5.451 7 C -0.345 4.345 8 H 0.078 0.922 9 C 0.027 3.973 10 N -0.888 5.888 11 Si 0.916 3.084 12 H -0.246 1.246 13 H -0.271 1.271 14 H -0.253 1.253 15 C 0.509 3.491 16 O -0.619 6.619 17 C -0.200 4.200 18 C -0.061 4.061 19 C -0.098 4.098 20 C -0.128 4.128 21 C -0.128 4.128 22 C -0.132 4.132 23 H 0.056 0.944 24 H 0.143 0.857 25 H 0.058 0.942 26 H 0.111 0.889 27 H 0.129 0.871 28 H 0.284 0.716 29 H 0.126 0.874 30 H 0.114 0.886 31 H 0.098 0.902 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.091 0.909 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.713 0.762 8.632 8.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.280 6.280 3 C 0.293 3.707 4 O -0.412 6.412 5 C -0.026 4.026 6 N -0.170 5.170 7 C -0.472 4.472 8 H 0.095 0.905 9 C -0.179 4.179 10 N -0.523 5.523 11 Si 0.739 3.261 12 H -0.172 1.172 13 H -0.197 1.197 14 H -0.177 1.177 15 C 0.303 3.697 16 O -0.507 6.507 17 C -0.220 4.220 18 C -0.081 4.081 19 C -0.116 4.116 20 C -0.165 4.165 21 C -0.165 4.165 22 C -0.170 4.170 23 H 0.075 0.925 24 H 0.161 0.839 25 H 0.077 0.923 26 H 0.128 0.872 27 H 0.147 0.853 28 H 0.094 0.906 29 H 0.144 0.856 30 H 0.132 0.868 31 H 0.116 0.884 32 H 0.102 0.898 33 H 0.095 0.905 34 H 0.110 0.890 35 H 0.100 0.900 36 H 0.090 0.910 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.364 0.761 8.884 9.020 hybrid contribution -0.170 -0.578 -0.697 0.921 sum 1.194 0.183 8.187 8.276 Atomic orbital electron populations 1.23573 0.74820 1.05971 1.02191 1.86485 1.25214 1.32245 1.84097 1.24624 0.92862 0.81670 0.71541 1.90601 1.67270 1.37645 1.45678 1.21524 0.87613 0.87619 1.05830 1.43300 1.58117 1.09279 1.06305 1.18841 1.42851 0.98028 0.87496 0.90468 1.26011 0.96415 1.01382 0.94069 1.69804 1.40825 1.42621 0.99045 0.86281 0.80046 0.79830 0.79987 1.17185 1.19688 1.17699 1.19125 0.79415 0.88790 0.82347 1.90593 1.57613 1.70372 1.32165 1.22588 1.05381 0.93823 1.00246 1.23741 0.92098 0.95505 0.96791 1.21901 0.98220 0.91019 1.00473 1.22961 0.98489 0.97721 0.97368 1.22827 0.95599 0.96117 1.02002 1.22924 0.97325 0.96772 0.99966 0.92518 0.83901 0.92302 0.87222 0.85337 0.90568 0.85624 0.86848 0.88422 0.89760 0.90465 0.89048 0.89981 0.90974 0.90109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.76 10.56 113.37 1.20 1.96 16 2 O -0.36 -13.46 10.56 -51.36 -0.54 -14.00 16 3 C 0.45 20.57 8.02 71.24 0.57 21.15 16 4 O -0.52 -27.34 16.18 21.95 0.36 -26.99 16 5 C 0.10 4.50 4.76 85.63 0.41 4.91 16 6 N -0.45 -22.97 1.67 -643.88 -1.08 -24.05 16 7 C -0.34 -18.81 8.85 84.12 0.74 -18.06 16 8 H 0.08 4.58 7.04 -2.91 -0.02 4.56 16 9 C 0.03 1.41 5.32 84.97 0.45 1.86 16 10 N -0.89 -49.10 13.95 21.68 0.30 -48.80 16 11 Si 0.92 39.16 24.96 68.60 1.71 40.87 16 12 H -0.25 -9.62 6.69 99.48 0.67 -8.95 16 13 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 14 H -0.25 -10.71 7.11 99.48 0.71 -10.01 16 15 C 0.51 25.46 7.56 86.53 0.65 26.11 16 16 O -0.62 -32.35 15.86 -4.21 -0.07 -32.41 16 17 C -0.20 -8.61 8.91 23.40 0.21 -8.40 16 18 C -0.06 -2.14 8.79 24.53 0.22 -1.93 16 19 C -0.10 -2.60 4.00 -11.01 -0.04 -2.64 16 20 C -0.13 -2.68 7.64 31.18 0.24 -2.44 16 21 C -0.13 -2.25 8.09 31.18 0.25 -2.00 16 22 C -0.13 -2.95 7.63 31.12 0.24 -2.72 16 23 H 0.06 1.63 8.13 -2.38 -0.02 1.61 16 24 H 0.14 2.58 8.14 -2.39 -0.02 2.56 16 25 H 0.06 1.64 8.13 -2.39 -0.02 1.62 16 26 H 0.11 4.79 3.14 -2.39 -0.01 4.78 16 27 H 0.13 5.34 7.49 -2.39 -0.02 5.32 16 28 H 0.28 14.40 8.31 -92.71 -0.77 13.63 16 29 H 0.13 5.49 6.55 -2.91 -0.02 5.47 16 30 H 0.11 4.09 7.50 -2.91 -0.02 4.07 16 31 H 0.10 2.61 8.06 -2.39 -0.02 2.59 16 32 H 0.08 1.74 8.09 -2.39 -0.02 1.73 16 33 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 35 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.08 1.83 8.09 -2.39 -0.02 1.81 16 Total: -1.00 -68.55 315.50 6.85 -61.70 By element: Atomic # 1 Polarization: 24.86 SS G_CDS: 1.03 Total: 25.89 kcal Atomic # 6 Polarization: 12.66 SS G_CDS: 5.13 Total: 17.79 kcal Atomic # 7 Polarization: -72.07 SS G_CDS: -0.77 Total: -72.85 kcal Atomic # 8 Polarization: -73.15 SS G_CDS: -0.25 Total: -73.40 kcal Atomic # 14 Polarization: 39.16 SS G_CDS: 1.71 Total: 40.87 kcal Total: -68.55 6.85 -61.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492070350.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.088 kcal (2) G-P(sol) polarization free energy of solvation -68.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds