Wall clock time and date at job start Mon Mar 30 2020 00:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34232 * 117.00632 * 2 1 4 4 O 1.20825 * 119.99305 * 359.97438 * 3 2 1 5 5 C 1.50693 * 120.00264 * 180.02562 * 3 2 1 6 6 N 1.46500 * 109.47184 * 179.97438 * 5 3 2 7 7 C 1.36808 * 120.00397 * 270.00155 * 6 5 3 8 8 H 1.07997 * 120.00701 * 203.42117 * 7 6 5 9 9 C 1.39077 * 119.99955 * 23.42036 * 7 6 5 10 10 N 1.31352 * 120.00049 * 351.48536 * 9 7 6 11 11 Si 1.86800 * 120.00273 * 171.48808 * 9 7 6 12 12 H 1.48497 * 109.47152 * 59.99756 * 11 9 7 13 13 H 1.48499 * 109.47271 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.47218 * 299.99994 * 11 9 7 15 15 C 1.34782 * 120.00014 * 89.99782 * 6 5 3 16 16 O 1.21664 * 119.99771 * 355.06045 * 15 6 5 17 17 C 1.46945 * 120.00211 * 175.33524 * 15 6 5 18 18 C 1.33122 * 120.00177 * 186.87456 * 17 15 6 19 19 C 1.50699 * 119.99838 * 16.08116 * 18 17 15 20 20 C 1.53789 * 113.61197 * 226.18310 * 19 18 17 21 21 C 1.53961 * 87.01666 * 220.04741 * 20 19 18 22 22 C 1.53777 * 87.11138 * 25.36332 * 21 20 19 23 23 H 1.09003 * 109.46975 * 300.00325 * 1 2 3 24 24 H 1.08998 * 109.47246 * 59.99855 * 1 2 3 25 25 H 1.09001 * 109.47105 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47671 * 59.99832 * 5 3 2 27 27 H 1.09000 * 109.47155 * 299.99484 * 5 3 2 28 28 H 0.96993 * 120.00183 * 185.01615 * 10 9 7 29 29 H 1.08003 * 119.99903 * 6.87143 * 17 15 6 30 30 H 1.07995 * 120.00199 * 196.08433 * 18 17 15 31 31 H 1.09000 * 112.85253 * 357.37933 * 19 18 17 32 32 H 1.08996 * 113.61528 * 334.57055 * 20 19 18 33 33 H 1.08995 * 113.61248 * 105.47558 * 20 19 18 34 34 H 1.08999 * 113.54015 * 270.81253 * 21 20 19 35 35 H 1.09003 * 113.74078 * 139.94404 * 21 20 19 36 36 H 1.08998 * 113.61881 * 220.08427 * 22 21 20 37 37 H 1.09007 * 113.61681 * 89.18405 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2747 -0.0006 6 7 3.9818 2.6796 -0.0011 7 6 4.1754 3.3353 -1.1861 8 1 4.8192 4.2015 -1.2251 9 6 3.5430 2.8865 -2.3406 10 7 2.8970 1.7428 -2.3333 11 14 3.6123 3.9100 -3.9017 12 1 5.0277 4.0884 -4.3141 13 1 2.8651 3.2168 -4.9817 14 1 2.9988 5.2387 -3.6501 15 6 4.1734 3.3261 1.1659 16 8 3.9151 2.7720 2.2178 17 6 4.6883 4.7024 1.1676 18 6 5.0069 5.2925 2.3175 19 6 5.1906 4.4650 3.5635 20 6 4.4794 5.0442 4.7980 21 6 5.7231 4.6333 5.6073 22 6 6.5162 4.7373 4.2940 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 3.9558 0.7808 -0.8907 27 1 3.9564 0.7805 0.8892 28 1 2.5182 1.3945 -3.1554 29 1 4.8083 5.2351 0.2358 30 1 5.1337 6.3643 2.3575 31 1 4.9909 3.4058 3.4015 32 1 4.3272 6.1223 4.7485 33 1 3.5768 4.5006 5.0769 34 1 5.6683 3.6200 6.0053 35 1 6.0211 5.3668 6.3566 36 1 7.2554 3.9465 4.1665 37 1 6.9219 5.7315 4.1063 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492070354.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:47 Heat of formation + Delta-G solvation = -58.140510 kcal Electronic energy + Delta-G solvation = -20976.419660 eV Core-core repulsion = 17721.361724 eV Total energy + Delta-G solvation = -3255.057936 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.52369 -38.79314 -37.76613 -35.46360 -34.57984 -32.10194 -31.59942 -28.59143 -26.42710 -25.39159 -25.19143 -24.32552 -21.41998 -19.79883 -19.15437 -19.03238 -16.73192 -16.56963 -16.38649 -15.42676 -15.23853 -14.99907 -14.70074 -14.33062 -13.76030 -13.40946 -12.81362 -12.56036 -12.35928 -12.23260 -12.11174 -11.98905 -11.68091 -11.49713 -11.28594 -11.19895 -10.80960 -10.58949 -10.50521 -10.32078 -10.10424 -9.80712 -9.74220 -9.39726 -9.00124 -8.50790 -8.11428 -7.93565 -6.49015 -4.07698 2.17073 3.09931 3.16714 3.17755 3.66426 3.76928 4.06542 4.36831 4.74361 5.03446 5.06660 5.10796 5.17588 5.54271 5.72537 5.79777 5.81169 5.87455 5.97785 5.98599 6.01875 6.17503 6.21516 6.35400 6.37246 6.41976 6.49563 6.59824 6.85210 7.03675 7.09927 7.27704 7.40212 7.55878 7.72437 8.22643 8.94459 9.17237 9.34860 9.76459 10.52639 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.017985 B = 0.006666 C = 0.005179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.480120 B = 4199.468896 C = 5405.234098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.374 6.374 3 C 0.491 3.509 4 O -0.512 6.512 5 C 0.155 3.845 6 N -0.422 5.422 7 C -0.324 4.324 8 H 0.105 0.895 9 C 0.041 3.959 10 N -0.883 5.883 11 Si 0.935 3.065 12 H -0.272 1.272 13 H -0.283 1.283 14 H -0.272 1.272 15 C 0.494 3.506 16 O -0.595 6.595 17 C -0.169 4.169 18 C -0.102 4.102 19 C -0.113 4.113 20 C -0.130 4.130 21 C -0.140 4.140 22 C -0.134 4.134 23 H 0.049 0.951 24 H 0.053 0.947 25 H 0.085 0.915 26 H 0.137 0.863 27 H 0.076 0.924 28 H 0.275 0.725 29 H 0.124 0.876 30 H 0.107 0.893 31 H 0.152 0.848 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.077 0.923 35 H 0.058 0.942 36 H 0.062 0.938 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.850 1.081 4.980 5.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.292 6.292 3 C 0.333 3.667 4 O -0.398 6.398 5 C 0.030 3.970 6 N -0.138 5.138 7 C -0.452 4.452 8 H 0.123 0.877 9 C -0.163 4.163 10 N -0.523 5.523 11 Si 0.761 3.239 12 H -0.198 1.198 13 H -0.208 1.208 14 H -0.197 1.197 15 C 0.287 3.713 16 O -0.483 6.483 17 C -0.189 4.189 18 C -0.123 4.123 19 C -0.130 4.130 20 C -0.168 4.168 21 C -0.178 4.178 22 C -0.172 4.172 23 H 0.068 0.932 24 H 0.072 0.928 25 H 0.103 0.897 26 H 0.155 0.845 27 H 0.094 0.906 28 H 0.086 0.914 29 H 0.142 0.858 30 H 0.125 0.875 31 H 0.169 0.831 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.319 1.001 5.293 5.865 hybrid contribution -0.419 0.726 -1.197 1.462 sum 1.900 1.728 4.096 4.834 Atomic orbital electron populations 1.22908 0.78994 1.01706 1.01467 1.86460 1.21414 1.35585 1.85695 1.23907 0.92281 0.80416 0.70056 1.90508 1.66637 1.36466 1.46198 1.20687 0.87144 0.85352 1.03848 1.43321 1.56617 1.08326 1.05535 1.19680 1.27317 1.12938 0.85234 0.87747 1.25348 0.94221 0.96358 1.00337 1.69550 1.35585 1.18279 1.28853 0.85863 0.78393 0.79782 0.79839 1.19752 1.20794 1.19710 1.18409 0.83057 0.86429 0.83402 1.90392 1.58181 1.68969 1.30802 1.22752 1.01432 0.96253 0.98480 1.23343 0.96859 0.97838 0.94220 1.22682 0.94570 1.04913 0.90841 1.22820 0.97216 0.99998 0.96732 1.22810 0.97552 1.01173 0.96248 1.22912 0.96887 1.01077 0.96306 0.93248 0.92840 0.89656 0.84527 0.90590 0.91407 0.85840 0.87474 0.83087 0.91178 0.91734 0.90475 0.92303 0.91948 0.91024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.79 10.56 101.05 1.07 1.85 16 2 O -0.37 -8.27 10.56 -39.26 -0.41 -8.69 16 3 C 0.49 12.43 5.89 36.00 0.21 12.64 16 4 O -0.51 -14.52 15.90 -18.75 -0.30 -14.82 16 5 C 0.16 3.77 5.21 -5.20 -0.03 3.74 16 6 N -0.42 -10.66 2.11 -117.50 -0.25 -10.91 16 7 C -0.32 -8.11 9.06 -15.02 -0.14 -8.25 16 8 H 0.10 2.42 6.02 -52.49 -0.32 2.10 16 9 C 0.04 1.01 5.41 -17.45 -0.09 0.92 16 10 N -0.88 -22.58 8.18 55.50 0.45 -22.12 16 11 Si 0.93 19.56 29.57 -169.99 -5.03 14.53 16 12 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 13 H -0.28 -5.95 7.11 56.52 0.40 -5.54 16 14 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 15 C 0.49 12.10 7.43 -12.73 -0.09 12.01 16 16 O -0.59 -15.23 12.84 5.22 0.07 -15.17 16 17 C -0.17 -3.51 9.25 -37.84 -0.35 -3.86 16 18 C -0.10 -1.83 9.26 -36.09 -0.33 -2.17 16 19 C -0.11 -1.98 3.41 -90.96 -0.31 -2.29 16 20 C -0.13 -2.01 7.64 -25.82 -0.20 -2.20 16 21 C -0.14 -1.87 8.09 -25.83 -0.21 -2.08 16 22 C -0.13 -1.92 7.63 -25.92 -0.20 -2.11 16 23 H 0.05 0.87 8.13 -51.93 -0.42 0.45 16 24 H 0.05 0.99 8.13 -51.93 -0.42 0.57 16 25 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 26 H 0.14 3.31 6.32 -51.93 -0.33 2.98 16 27 H 0.08 1.73 7.50 -51.93 -0.39 1.34 16 28 H 0.27 6.77 8.31 -40.82 -0.34 6.44 16 29 H 0.12 2.43 6.25 -52.48 -0.33 2.10 16 30 H 0.11 1.62 8.06 -52.49 -0.42 1.19 16 31 H 0.15 3.19 4.68 -53.45 -0.25 2.94 16 32 H 0.07 0.99 8.09 -51.93 -0.42 0.56 16 33 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.07 0.93 8.09 -51.92 -0.42 0.50 16 LS Contribution 309.61 15.07 4.67 4.67 Total: -1.00 -30.01 309.61 -6.44 -36.45 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -4.97 Total: 7.86 kcal Atomic # 6 Polarization: 8.87 SS G_CDS: -0.67 Total: 8.19 kcal Atomic # 7 Polarization: -33.24 SS G_CDS: 0.21 Total: -33.03 kcal Atomic # 8 Polarization: -38.03 SS G_CDS: -0.65 Total: -38.67 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -5.03 Total: 14.53 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.01 -6.44 -36.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492070354.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.687 kcal (2) G-P(sol) polarization free energy of solvation -30.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds