Wall clock time and date at job start Mon Mar 30 2020 00:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34232 * 117.00632 * 2 1 4 4 O 1.20825 * 119.99305 * 359.97438 * 3 2 1 5 5 C 1.50693 * 120.00264 * 180.02562 * 3 2 1 6 6 N 1.46500 * 109.47184 * 179.97438 * 5 3 2 7 7 C 1.36808 * 120.00397 * 270.00155 * 6 5 3 8 8 H 1.07997 * 120.00701 * 203.42117 * 7 6 5 9 9 C 1.39077 * 119.99955 * 23.42036 * 7 6 5 10 10 N 1.31352 * 120.00049 * 351.48536 * 9 7 6 11 11 Si 1.86800 * 120.00273 * 171.48808 * 9 7 6 12 12 H 1.48497 * 109.47152 * 59.99756 * 11 9 7 13 13 H 1.48499 * 109.47271 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.47218 * 299.99994 * 11 9 7 15 15 C 1.34782 * 120.00014 * 89.99782 * 6 5 3 16 16 O 1.21664 * 119.99771 * 355.06045 * 15 6 5 17 17 C 1.46945 * 120.00211 * 175.33524 * 15 6 5 18 18 C 1.33122 * 120.00177 * 186.87456 * 17 15 6 19 19 C 1.50699 * 119.99838 * 16.08116 * 18 17 15 20 20 C 1.53789 * 113.61197 * 226.18310 * 19 18 17 21 21 C 1.53961 * 87.01666 * 220.04741 * 20 19 18 22 22 C 1.53777 * 87.11138 * 25.36332 * 21 20 19 23 23 H 1.09003 * 109.46975 * 300.00325 * 1 2 3 24 24 H 1.08998 * 109.47246 * 59.99855 * 1 2 3 25 25 H 1.09001 * 109.47105 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47671 * 59.99832 * 5 3 2 27 27 H 1.09000 * 109.47155 * 299.99484 * 5 3 2 28 28 H 0.96993 * 120.00183 * 185.01615 * 10 9 7 29 29 H 1.08003 * 119.99903 * 6.87143 * 17 15 6 30 30 H 1.07995 * 120.00199 * 196.08433 * 18 17 15 31 31 H 1.09000 * 112.85253 * 357.37933 * 19 18 17 32 32 H 1.08996 * 113.61528 * 334.57055 * 20 19 18 33 33 H 1.08995 * 113.61248 * 105.47558 * 20 19 18 34 34 H 1.08999 * 113.54015 * 270.81253 * 21 20 19 35 35 H 1.09003 * 113.74078 * 139.94404 * 21 20 19 36 36 H 1.08998 * 113.61881 * 220.08427 * 22 21 20 37 37 H 1.09007 * 113.61681 * 89.18405 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2747 -0.0006 6 7 3.9818 2.6796 -0.0011 7 6 4.1754 3.3353 -1.1861 8 1 4.8192 4.2015 -1.2251 9 6 3.5430 2.8865 -2.3406 10 7 2.8970 1.7428 -2.3333 11 14 3.6123 3.9100 -3.9017 12 1 5.0277 4.0884 -4.3141 13 1 2.8651 3.2168 -4.9817 14 1 2.9988 5.2387 -3.6501 15 6 4.1734 3.3261 1.1659 16 8 3.9151 2.7720 2.2178 17 6 4.6883 4.7024 1.1676 18 6 5.0069 5.2925 2.3175 19 6 5.1906 4.4650 3.5635 20 6 4.4794 5.0442 4.7980 21 6 5.7231 4.6333 5.6073 22 6 6.5162 4.7373 4.2940 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 3.9558 0.7808 -0.8907 27 1 3.9564 0.7805 0.8892 28 1 2.5182 1.3945 -3.1554 29 1 4.8083 5.2351 0.2358 30 1 5.1337 6.3643 2.3575 31 1 4.9909 3.4058 3.4015 32 1 4.3272 6.1223 4.7485 33 1 3.5768 4.5006 5.0769 34 1 5.6683 3.6200 6.0053 35 1 6.0211 5.3668 6.3566 36 1 7.2554 3.9465 4.1665 37 1 6.9219 5.7315 4.1063 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492070354.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:47 Heat of formation + Delta-G solvation = -74.599033 kcal Electronic energy + Delta-G solvation = -20977.133355 eV Core-core repulsion = 17721.361724 eV Total energy + Delta-G solvation = -3255.771631 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.38113 -40.45576 -39.24608 -37.31209 -36.50517 -33.65391 -33.48171 -30.38650 -28.01583 -27.07128 -26.36041 -25.90480 -23.07629 -21.62302 -20.83022 -20.38472 -18.56182 -18.37417 -18.16370 -17.26292 -16.99089 -16.40708 -16.25070 -16.03659 -15.38446 -15.15381 -14.38503 -14.21761 -14.05948 -13.91795 -13.31574 -13.28791 -13.22938 -13.07634 -12.96787 -12.84267 -12.62625 -12.37284 -12.15279 -11.60426 -11.57649 -11.47038 -11.29636 -11.00500 -10.84894 -10.17650 -9.83321 -9.71376 -8.34957 -5.99704 0.59842 1.43121 1.49568 1.55002 1.76157 1.98773 2.30880 2.58178 2.97755 3.19067 3.87390 3.95870 3.96782 4.21385 4.27351 4.33133 4.35798 4.39385 4.48604 4.54862 4.70426 4.77180 4.88552 4.91048 4.94124 5.10412 5.15081 5.20147 5.31886 5.40100 5.59180 5.63004 5.69994 5.76371 6.10539 6.34429 7.05909 7.24180 7.49227 7.90591 8.66562 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.017985 B = 0.006666 C = 0.005179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.480120 B = 4199.468896 C = 5405.234098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.376 6.376 3 C 0.493 3.507 4 O -0.551 6.551 5 C 0.154 3.846 6 N -0.438 5.438 7 C -0.342 4.342 8 H 0.118 0.882 9 C -0.005 4.005 10 N -0.906 5.906 11 Si 1.000 3.000 12 H -0.254 1.254 13 H -0.286 1.286 14 H -0.276 1.276 15 C 0.484 3.516 16 O -0.618 6.618 17 C -0.210 4.210 18 C -0.065 4.065 19 C -0.138 4.138 20 C -0.129 4.129 21 C -0.129 4.129 22 C -0.122 4.122 23 H 0.049 0.951 24 H 0.043 0.957 25 H 0.135 0.865 26 H 0.134 0.866 27 H 0.081 0.919 28 H 0.272 0.728 29 H 0.132 0.868 30 H 0.148 0.852 31 H 0.113 0.887 32 H 0.091 0.909 33 H 0.045 0.955 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.061 0.939 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.753 2.652 5.561 7.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.293 6.293 3 C 0.337 3.663 4 O -0.440 6.440 5 C 0.029 3.971 6 N -0.155 5.155 7 C -0.469 4.469 8 H 0.135 0.865 9 C -0.205 4.205 10 N -0.547 5.547 11 Si 0.823 3.177 12 H -0.178 1.178 13 H -0.211 1.211 14 H -0.201 1.201 15 C 0.278 3.722 16 O -0.508 6.508 17 C -0.230 4.230 18 C -0.085 4.085 19 C -0.156 4.156 20 C -0.167 4.167 21 C -0.166 4.166 22 C -0.159 4.159 23 H 0.068 0.932 24 H 0.062 0.938 25 H 0.153 0.847 26 H 0.151 0.849 27 H 0.099 0.901 28 H 0.083 0.917 29 H 0.150 0.850 30 H 0.166 0.834 31 H 0.130 0.870 32 H 0.109 0.891 33 H 0.064 0.936 34 H 0.091 0.909 35 H 0.106 0.894 36 H 0.080 0.920 37 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 3.240 2.549 5.884 7.184 hybrid contribution -0.734 0.189 -1.225 1.441 sum 2.505 2.738 4.659 5.956 Atomic orbital electron populations 1.23274 0.76428 1.04817 1.01012 1.86427 1.23914 1.33893 1.85027 1.24050 0.92629 0.80612 0.68998 1.90468 1.67495 1.37811 1.48209 1.20687 0.86995 0.85737 1.03728 1.43538 1.57267 1.08619 1.06082 1.20074 1.27903 1.13529 0.85408 0.86497 1.26214 0.93848 0.97217 1.03186 1.69649 1.36346 1.19468 1.29212 0.84879 0.79097 0.77674 0.76040 1.17834 1.21122 1.20126 1.19112 0.82510 0.87725 0.82854 1.90399 1.59061 1.69986 1.31391 1.22677 1.05478 0.94737 1.00156 1.23844 0.91963 0.99594 0.93078 1.22667 0.98081 1.02916 0.91945 1.22853 0.97220 1.00856 0.95733 1.22764 0.95640 1.01824 0.96403 1.22885 0.95071 1.02346 0.95608 0.93248 0.93795 0.84745 0.84886 0.90144 0.91718 0.85044 0.83413 0.86983 0.89071 0.93621 0.90870 0.89417 0.92018 0.88613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.35 10.56 113.37 1.20 2.55 16 2 O -0.38 -16.81 10.56 -51.43 -0.54 -17.36 16 3 C 0.49 25.70 5.89 71.23 0.42 26.12 16 4 O -0.55 -32.21 15.90 21.97 0.35 -31.86 16 5 C 0.15 7.78 5.21 85.63 0.45 8.23 16 6 N -0.44 -22.86 2.11 -643.89 -1.36 -24.21 16 7 C -0.34 -17.40 9.06 84.12 0.76 -16.64 16 8 H 0.12 5.44 6.02 -2.91 -0.02 5.42 16 9 C 0.00 -0.23 5.41 84.97 0.46 0.23 16 10 N -0.91 -47.33 8.18 21.69 0.18 -47.15 16 11 Si 1.00 40.07 29.57 68.60 2.03 42.10 16 12 H -0.25 -9.37 7.11 99.48 0.71 -8.66 16 13 H -0.29 -11.47 7.11 99.48 0.71 -10.77 16 14 H -0.28 -11.15 7.11 99.48 0.71 -10.44 16 15 C 0.48 24.37 7.43 86.52 0.64 25.01 16 16 O -0.62 -32.91 12.84 -4.24 -0.05 -32.96 16 17 C -0.21 -8.70 9.25 23.40 0.22 -8.48 16 18 C -0.06 -2.19 9.26 24.54 0.23 -1.97 16 19 C -0.14 -4.70 3.41 -11.01 -0.04 -4.73 16 20 C -0.13 -3.71 7.64 31.18 0.24 -3.47 16 21 C -0.13 -3.05 8.09 31.18 0.25 -2.80 16 22 C -0.12 -3.11 7.63 31.12 0.24 -2.87 16 23 H 0.05 1.73 8.13 -2.39 -0.02 1.71 16 24 H 0.04 1.62 8.13 -2.39 -0.02 1.60 16 25 H 0.13 3.36 8.14 -2.39 -0.02 3.34 16 26 H 0.13 6.73 6.32 -2.39 -0.02 6.71 16 27 H 0.08 3.86 7.50 -2.39 -0.02 3.84 16 28 H 0.27 13.69 8.31 -92.71 -0.77 12.92 16 29 H 0.13 5.11 6.25 -2.91 -0.02 5.09 16 30 H 0.15 3.82 8.06 -2.91 -0.02 3.79 16 31 H 0.11 4.84 4.68 -26.43 -0.12 4.72 16 32 H 0.09 2.23 8.09 -2.39 -0.02 2.21 16 33 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.10 2.02 8.09 -2.38 -0.02 2.00 16 Total: -1.00 -67.02 309.61 6.62 -60.40 By element: Atomic # 1 Polarization: 28.91 SS G_CDS: 0.96 Total: 29.87 kcal Atomic # 6 Polarization: 16.12 SS G_CDS: 5.06 Total: 21.18 kcal Atomic # 7 Polarization: -70.19 SS G_CDS: -1.18 Total: -71.37 kcal Atomic # 8 Polarization: -81.94 SS G_CDS: -0.25 Total: -82.18 kcal Atomic # 14 Polarization: 40.07 SS G_CDS: 2.03 Total: 42.10 kcal Total: -67.02 6.62 -60.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492070354.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.201 kcal (2) G-P(sol) polarization free energy of solvation -67.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds