Wall clock time and date at job start Mon Mar 30 2020 00:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46497 * 109.47032 * 2 1 4 4 C 1.37105 * 120.00077 * 274.95949 * 3 2 1 5 5 H 1.08001 * 120.00110 * 145.78953 * 4 3 2 6 6 C 1.38949 * 119.99819 * 325.78963 * 4 3 2 7 7 N 1.31417 * 120.00015 * 337.10336 * 6 4 3 8 8 Si 1.86792 * 120.00031 * 157.10561 * 6 4 3 9 9 H 1.48505 * 109.47259 * 359.97438 * 8 6 4 10 10 H 1.48508 * 109.47172 * 119.99676 * 8 6 4 11 11 H 1.48493 * 109.47436 * 239.99727 * 8 6 4 12 12 C 1.34776 * 120.00066 * 94.95890 * 3 2 1 13 13 O 1.21301 * 119.99926 * 180.02562 * 12 3 2 14 14 C 1.50694 * 120.00009 * 359.97438 * 12 3 2 15 15 C 1.54418 * 129.01114 * 180.02562 * 14 12 3 16 16 C 1.54421 * 78.96203 * 179.32640 * 15 14 12 17 17 C 1.50700 * 129.01483 * 180.67740 * 16 15 14 18 18 O 1.20823 * 119.99722 * 359.97438 * 17 16 15 19 19 O 1.34224 * 120.00150 * 179.97438 * 17 16 15 20 20 C 1.45199 * 117.00143 * 179.97438 * 19 17 16 21 21 C 1.54894 * 129.08991 * 299.93977 * 14 12 3 22 22 C 1.54890 * 129.95550 * 58.83123 * 14 12 3 23 23 H 1.08992 * 109.47098 * 299.99897 * 1 2 3 24 24 H 1.09004 * 109.46827 * 60.00509 * 1 2 3 25 25 H 1.09005 * 109.46706 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47524 * 240.00173 * 2 1 3 27 27 H 1.08996 * 109.47369 * 119.99706 * 2 1 3 28 28 H 0.96993 * 119.99676 * 179.97438 * 7 6 4 29 29 H 1.08996 * 114.93330 * 291.84457 * 15 14 12 30 30 H 1.08999 * 114.93457 * 66.81167 * 15 14 12 31 31 H 1.08996 * 109.47373 * 180.02562 * 20 19 17 32 32 H 1.09007 * 109.46883 * 300.00233 * 20 19 17 33 33 H 1.08996 * 109.47274 * 59.99955 * 20 19 17 34 34 H 1.09001 * 114.97627 * 293.22197 * 21 14 12 35 35 H 1.08996 * 114.97959 * 68.33365 * 21 14 12 36 36 H 1.09000 * 114.97709 * 292.27010 * 22 14 12 37 37 H 1.08999 * 114.97184 * 67.43500 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1500 2.0618 -1.1829 5 1 1.9628 3.1248 -1.2181 6 6 2.5244 1.3837 -2.3365 7 7 3.1743 0.2449 -2.2477 8 14 2.1042 2.0909 -4.0135 9 1 1.3748 3.3730 -3.8415 10 1 3.3551 2.3312 -4.7770 11 1 1.2482 1.1307 -4.7554 12 6 2.3381 1.9829 1.1628 13 8 2.7419 3.1267 1.1628 14 6 2.1927 1.2352 2.4630 15 6 2.4940 1.7153 3.8994 16 6 1.9919 0.2797 4.1668 17 6 1.8290 -0.4390 5.4814 18 8 2.1103 0.1206 6.5146 19 8 1.3714 -1.7006 5.5043 20 6 1.2404 -2.3307 6.8059 21 6 0.9223 0.6156 3.0967 22 6 2.8484 -0.0890 2.9276 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 3.4353 -0.2285 -3.0530 29 1 3.5491 1.8810 4.1167 30 1 1.8400 2.5065 4.2661 31 1 0.8621 -3.3453 6.6820 32 1 2.2148 -2.3636 7.2934 33 1 0.5464 -1.7562 7.4195 34 1 0.1674 1.3357 3.4124 35 1 0.5152 -0.2443 2.5649 36 1 2.5207 -0.9784 2.3894 37 1 3.9262 -0.0393 3.0823 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592587321.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:35:25 Heat of formation + Delta-G solvation = -5.719512 kcal Electronic energy + Delta-G solvation = -20972.387062 eV Core-core repulsion = 17719.602272 eV Total energy + Delta-G solvation = -3252.784791 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.20095 -40.04508 -37.86635 -36.47872 -35.01506 -31.98779 -29.51632 -28.54768 -26.48485 -25.65755 -25.58098 -24.74017 -22.59272 -21.73338 -19.60554 -18.01014 -17.35472 -16.96838 -16.51173 -16.40428 -15.46000 -14.82207 -14.40980 -14.23613 -13.96503 -13.77543 -13.44989 -13.23191 -12.78037 -12.53156 -12.18828 -11.85961 -11.77537 -11.36297 -11.14679 -11.10635 -11.07700 -10.93610 -10.89468 -10.56160 -10.38910 -10.32135 -10.12962 -10.01458 -9.88122 -9.02042 -8.49328 -7.51383 -6.35674 -3.98820 2.01097 2.52058 3.11885 3.25153 3.31656 3.58627 4.08326 4.21712 4.42721 4.55080 4.59839 4.71609 4.83426 4.93530 5.01022 5.02331 5.17456 5.34324 5.65499 5.69086 5.72561 5.81193 6.01894 6.05061 6.10525 6.12162 6.23236 6.26989 6.29516 6.43011 6.55398 6.92958 7.28592 7.58137 7.69157 8.21441 8.47658 9.13782 9.37237 9.97434 10.65993 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.036803 B = 0.004917 C = 0.004622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.634568 B = 5693.042539 C = 6056.781372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.081 3.919 3 N -0.427 5.427 4 C -0.308 4.308 5 H 0.094 0.906 6 C 0.038 3.962 7 N -0.865 5.865 8 Si 0.917 3.083 9 H -0.267 1.267 10 H -0.281 1.281 11 H -0.280 1.280 12 C 0.511 3.489 13 O -0.574 6.574 14 C -0.123 4.123 15 C -0.063 4.063 16 C -0.163 4.163 17 C 0.530 3.470 18 O -0.502 6.502 19 O -0.351 6.351 20 C 0.035 3.965 21 C -0.086 4.086 22 C -0.080 4.080 23 H 0.044 0.956 24 H 0.058 0.942 25 H 0.049 0.951 26 H 0.115 0.885 27 H 0.057 0.943 28 H 0.268 0.732 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.102 0.898 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.080 0.920 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.182 -7.882 10.487 14.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.042 4.042 3 N -0.145 5.145 4 C -0.435 4.435 5 H 0.112 0.888 6 C -0.166 4.166 7 N -0.503 5.503 8 Si 0.743 3.257 9 H -0.191 1.191 10 H -0.207 1.207 11 H -0.206 1.206 12 C 0.298 3.702 13 O -0.457 6.457 14 C -0.127 4.127 15 C -0.100 4.100 16 C -0.164 4.164 17 C 0.373 3.627 18 O -0.389 6.389 19 O -0.268 6.268 20 C -0.059 4.059 21 C -0.124 4.124 22 C -0.118 4.118 23 H 0.063 0.937 24 H 0.077 0.923 25 H 0.068 0.932 26 H 0.132 0.868 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.101 0.899 30 H 0.100 0.900 31 H 0.120 0.880 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.098 0.902 35 H 0.110 0.890 36 H 0.110 0.890 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -4.830 -7.314 10.654 13.796 hybrid contribution -0.197 -0.040 -0.473 0.514 sum -5.027 -7.353 10.181 13.527 Atomic orbital electron populations 1.22197 0.98031 1.00196 1.01755 1.21880 0.92375 0.85494 1.04483 1.43420 1.54486 1.12067 1.04480 1.19510 1.45354 0.94802 0.83859 0.88808 1.25327 0.94692 0.96548 1.00080 1.69886 1.33713 1.17042 1.29650 0.86021 0.78477 0.79341 0.81814 1.19109 1.20744 1.20569 1.18355 0.82163 0.87064 0.82591 1.90545 1.50231 1.18427 1.86487 1.23871 0.97576 0.96260 0.94989 1.23609 1.01838 0.91953 0.92632 1.23537 1.03269 0.99010 0.90587 1.21526 0.72662 0.79529 0.88953 1.90655 1.46491 1.67148 1.34619 1.86519 1.76925 1.28239 1.35087 1.23289 1.02423 0.97723 0.82428 1.24299 0.94990 1.00403 0.92671 1.24246 0.99135 0.97443 0.90939 0.93683 0.92324 0.93238 0.86777 0.92531 0.92194 0.89905 0.89986 0.87971 0.91862 0.91882 0.90191 0.89017 0.88973 0.89915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.89 9.56 37.16 0.36 -2.53 16 2 C 0.08 1.70 5.34 -4.04 -0.02 1.67 16 3 N -0.43 -10.52 2.55 -114.81 -0.29 -10.82 16 4 C -0.31 -8.33 8.94 -14.93 -0.13 -8.46 16 5 H 0.09 2.67 7.71 -52.49 -0.40 2.27 16 6 C 0.04 0.97 5.00 -17.47 -0.09 0.89 16 7 N -0.87 -22.57 11.27 55.50 0.63 -21.94 16 8 Si 0.92 20.07 29.61 -169.99 -5.03 15.04 16 9 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 10 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 11 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 12 C 0.51 12.43 7.74 -10.99 -0.09 12.35 16 13 O -0.57 -16.12 16.92 5.54 0.09 -16.03 16 14 C -0.12 -2.30 2.52 -171.98 -0.43 -2.73 16 15 C -0.06 -1.04 7.79 -26.70 -0.21 -1.25 16 16 C -0.16 -2.44 3.56 -171.83 -0.61 -3.05 16 17 C 0.53 7.78 8.07 36.01 0.29 8.07 16 18 O -0.50 -8.35 16.84 -18.75 -0.32 -8.67 16 19 O -0.35 -4.43 10.56 -39.24 -0.41 -4.84 16 20 C 0.04 0.31 10.56 101.05 1.07 1.38 16 21 C -0.09 -1.30 6.37 -28.14 -0.18 -1.48 16 22 C -0.08 -1.26 7.15 -28.06 -0.20 -1.46 16 23 H 0.04 0.74 6.36 -51.93 -0.33 0.41 16 24 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 25 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.11 2.65 5.32 -51.93 -0.28 2.38 16 27 H 0.06 1.05 3.69 -51.93 -0.19 0.86 16 28 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 29 H 0.08 1.35 7.97 -51.93 -0.41 0.94 16 30 H 0.08 1.32 7.97 -51.93 -0.41 0.90 16 31 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 33 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 34 H 0.08 1.14 7.97 -51.93 -0.41 0.73 16 35 H 0.09 1.28 5.86 -51.93 -0.30 0.98 16 36 H 0.09 1.35 6.07 -51.93 -0.32 1.03 16 37 H 0.08 1.27 7.97 -51.93 -0.41 0.85 16 LS Contribution 307.55 15.07 4.63 4.63 Total: -1.00 -31.37 307.55 -5.68 -37.05 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -4.73 Total: 2.19 kcal Atomic # 6 Polarization: 3.64 SS G_CDS: -0.25 Total: 3.39 kcal Atomic # 7 Polarization: -33.09 SS G_CDS: 0.33 Total: -32.76 kcal Atomic # 8 Polarization: -28.90 SS G_CDS: -0.64 Total: -29.54 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.03 Total: 15.04 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -31.37 -5.68 -37.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592587321.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.329 kcal (2) G-P(sol) polarization free energy of solvation -31.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds