Wall clock time and date at job start Mon Mar 30 2020 00:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46497 * 109.47032 * 2 1 4 4 C 1.37105 * 120.00077 * 274.95949 * 3 2 1 5 5 H 1.08001 * 120.00110 * 145.78953 * 4 3 2 6 6 C 1.38949 * 119.99819 * 325.78963 * 4 3 2 7 7 N 1.31417 * 120.00015 * 337.10336 * 6 4 3 8 8 Si 1.86792 * 120.00031 * 157.10561 * 6 4 3 9 9 H 1.48505 * 109.47259 * 359.97438 * 8 6 4 10 10 H 1.48508 * 109.47172 * 119.99676 * 8 6 4 11 11 H 1.48493 * 109.47436 * 239.99727 * 8 6 4 12 12 C 1.34776 * 120.00066 * 94.95890 * 3 2 1 13 13 O 1.21301 * 119.99926 * 180.02562 * 12 3 2 14 14 C 1.50694 * 120.00009 * 359.97438 * 12 3 2 15 15 C 1.54418 * 129.01114 * 180.02562 * 14 12 3 16 16 C 1.54421 * 78.96203 * 179.32640 * 15 14 12 17 17 C 1.50700 * 129.01483 * 180.67740 * 16 15 14 18 18 O 1.20823 * 119.99722 * 359.97438 * 17 16 15 19 19 O 1.34224 * 120.00150 * 179.97438 * 17 16 15 20 20 C 1.45199 * 117.00143 * 179.97438 * 19 17 16 21 21 C 1.54894 * 129.08991 * 299.93977 * 14 12 3 22 22 C 1.54890 * 129.95550 * 58.83123 * 14 12 3 23 23 H 1.08992 * 109.47098 * 299.99897 * 1 2 3 24 24 H 1.09004 * 109.46827 * 60.00509 * 1 2 3 25 25 H 1.09005 * 109.46706 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47524 * 240.00173 * 2 1 3 27 27 H 1.08996 * 109.47369 * 119.99706 * 2 1 3 28 28 H 0.96993 * 119.99676 * 179.97438 * 7 6 4 29 29 H 1.08996 * 114.93330 * 291.84457 * 15 14 12 30 30 H 1.08999 * 114.93457 * 66.81167 * 15 14 12 31 31 H 1.08996 * 109.47373 * 180.02562 * 20 19 17 32 32 H 1.09007 * 109.46883 * 300.00233 * 20 19 17 33 33 H 1.08996 * 109.47274 * 59.99955 * 20 19 17 34 34 H 1.09001 * 114.97627 * 293.22197 * 21 14 12 35 35 H 1.08996 * 114.97959 * 68.33365 * 21 14 12 36 36 H 1.09000 * 114.97709 * 292.27010 * 22 14 12 37 37 H 1.08999 * 114.97184 * 67.43500 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1500 2.0618 -1.1829 5 1 1.9628 3.1248 -1.2181 6 6 2.5244 1.3837 -2.3365 7 7 3.1743 0.2449 -2.2477 8 14 2.1042 2.0909 -4.0135 9 1 1.3748 3.3730 -3.8415 10 1 3.3551 2.3312 -4.7770 11 1 1.2482 1.1307 -4.7554 12 6 2.3381 1.9829 1.1628 13 8 2.7419 3.1267 1.1628 14 6 2.1927 1.2352 2.4630 15 6 2.4940 1.7153 3.8994 16 6 1.9919 0.2797 4.1668 17 6 1.8290 -0.4390 5.4814 18 8 2.1103 0.1206 6.5146 19 8 1.3714 -1.7006 5.5043 20 6 1.2404 -2.3307 6.8059 21 6 0.9223 0.6156 3.0967 22 6 2.8484 -0.0890 2.9276 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 3.4353 -0.2285 -3.0530 29 1 3.5491 1.8810 4.1167 30 1 1.8400 2.5065 4.2661 31 1 0.8621 -3.3453 6.6820 32 1 2.2148 -2.3636 7.2934 33 1 0.5464 -1.7562 7.4195 34 1 0.1674 1.3357 3.4124 35 1 0.5152 -0.2443 2.5649 36 1 2.5207 -0.9784 2.3894 37 1 3.9262 -0.0393 3.0823 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592587321.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:35:25 Heat of formation + Delta-G solvation = -24.482994 kcal Electronic energy + Delta-G solvation = -20973.200708 eV Core-core repulsion = 17719.602272 eV Total energy + Delta-G solvation = -3253.598436 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.51584 -41.15671 -39.68652 -37.54926 -36.92457 -33.92219 -31.19313 -29.49538 -28.03470 -26.92929 -26.83215 -26.25917 -24.14058 -23.26894 -20.90583 -19.51476 -18.78760 -18.41959 -17.97877 -17.41163 -17.26869 -16.48561 -15.86677 -15.67878 -15.38574 -15.29417 -14.82203 -14.34852 -14.31169 -13.91873 -13.60707 -13.47893 -13.07803 -12.89072 -12.69212 -12.57097 -12.50639 -12.28937 -12.20661 -12.05952 -11.83218 -11.78411 -11.64615 -11.32310 -11.30917 -10.90519 -10.38082 -9.44897 -8.32098 -6.04010 0.87059 1.35902 1.44010 1.50177 1.57856 1.85854 2.29879 2.91702 2.96989 3.00019 3.20089 3.24813 3.42281 3.62575 3.78121 4.13911 4.30898 4.33476 4.36337 4.47631 4.53100 4.67515 4.71657 4.74419 4.79831 4.80989 4.85414 4.91617 5.04277 5.11172 5.23108 5.39842 5.48608 5.67575 6.22136 6.55000 6.61859 7.17605 7.47226 8.06907 8.67964 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.036803 B = 0.004917 C = 0.004622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.634568 B = 5693.042539 C = 6056.781372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.080 3.920 3 N -0.436 5.436 4 C -0.344 4.344 5 H 0.064 0.936 6 C 0.010 3.990 7 N -0.882 5.882 8 Si 0.979 3.021 9 H -0.273 1.273 10 H -0.279 1.279 11 H -0.262 1.262 12 C 0.498 3.502 13 O -0.630 6.630 14 C -0.157 4.157 15 C -0.069 4.069 16 C -0.139 4.139 17 C 0.538 3.462 18 O -0.525 6.525 19 O -0.351 6.351 20 C 0.026 3.974 21 C -0.069 4.069 22 C -0.071 4.071 23 H 0.056 0.944 24 H 0.038 0.962 25 H 0.085 0.915 26 H 0.092 0.908 27 H 0.080 0.920 28 H 0.275 0.725 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.136 0.864 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.089 0.911 35 H 0.111 0.889 36 H 0.109 0.891 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.441 -10.279 11.085 16.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.043 4.043 3 N -0.153 5.153 4 C -0.472 4.472 5 H 0.081 0.919 6 C -0.194 4.194 7 N -0.519 5.519 8 Si 0.802 3.198 9 H -0.197 1.197 10 H -0.205 1.205 11 H -0.187 1.187 12 C 0.287 3.713 13 O -0.517 6.517 14 C -0.160 4.160 15 C -0.107 4.107 16 C -0.140 4.140 17 C 0.382 3.618 18 O -0.414 6.414 19 O -0.266 6.266 20 C -0.066 4.066 21 C -0.106 4.106 22 C -0.108 4.108 23 H 0.075 0.925 24 H 0.057 0.943 25 H 0.104 0.896 26 H 0.110 0.890 27 H 0.098 0.902 28 H 0.085 0.915 29 H 0.097 0.903 30 H 0.102 0.898 31 H 0.154 0.846 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.108 0.892 35 H 0.129 0.871 36 H 0.127 0.873 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -6.108 -9.775 11.253 16.109 hybrid contribution 0.237 0.668 -0.628 0.947 sum -5.871 -9.107 10.625 15.175 Atomic orbital electron populations 1.22121 0.95425 1.02418 1.01376 1.22014 0.94524 0.83316 1.04442 1.43678 1.54292 1.13264 1.04033 1.19419 1.47695 0.94167 0.85921 0.91857 1.26004 0.93826 0.96801 1.02731 1.69944 1.33399 1.17638 1.30900 0.85116 0.78302 0.78722 0.77634 1.19712 1.20493 1.18663 1.19157 0.80960 0.86792 0.84388 1.90486 1.52551 1.20973 1.87710 1.23580 1.01523 0.97945 0.92980 1.23669 1.01918 0.93591 0.91473 1.23164 1.02630 0.97519 0.90721 1.21252 0.72355 0.80162 0.88038 1.90659 1.47668 1.67888 1.35212 1.86497 1.76088 1.26831 1.37212 1.23672 1.02936 0.99105 0.80914 1.24269 0.93841 1.00739 0.91766 1.24243 0.99415 0.96143 0.91012 0.92505 0.94319 0.89589 0.89046 0.90167 0.91502 0.90312 0.89848 0.84556 0.91681 0.91532 0.89244 0.87084 0.87296 0.89824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.17 9.56 71.98 0.69 -4.48 16 2 C 0.08 3.25 5.34 86.38 0.46 3.71 16 3 N -0.44 -21.96 2.55 -635.54 -1.62 -23.58 16 4 C -0.34 -19.31 8.94 84.04 0.75 -18.56 16 5 H 0.06 3.85 7.71 -2.91 -0.02 3.82 16 6 C 0.01 0.50 5.00 84.93 0.42 0.92 16 7 N -0.88 -46.01 11.27 21.66 0.24 -45.76 16 8 Si 0.98 41.41 29.61 68.60 2.03 43.44 16 9 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 10 H -0.28 -11.67 7.11 99.48 0.71 -10.97 16 11 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 12 C 0.50 24.95 7.74 87.66 0.68 25.63 16 13 O -0.63 -37.34 16.92 -3.10 -0.05 -37.39 16 14 C -0.16 -5.76 2.52 -63.50 -0.16 -5.92 16 15 C -0.07 -2.26 7.79 30.62 0.24 -2.02 16 16 C -0.14 -3.85 3.56 -63.40 -0.23 -4.07 16 17 C 0.54 14.36 8.07 71.24 0.57 14.93 16 18 O -0.53 -16.44 16.84 21.97 0.37 -16.07 16 19 O -0.35 -7.61 10.56 -51.35 -0.54 -8.15 16 20 C 0.03 0.37 10.56 113.37 1.20 1.57 16 21 C -0.07 -1.91 6.37 29.68 0.19 -1.72 16 22 C -0.07 -2.09 7.15 29.73 0.21 -1.88 16 23 H 0.06 1.74 6.36 -2.39 -0.02 1.72 16 24 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 25 H 0.09 2.22 8.14 -2.38 -0.02 2.21 16 26 H 0.09 4.20 5.32 -2.39 -0.01 4.19 16 27 H 0.08 2.81 3.69 -2.39 -0.01 2.80 16 28 H 0.28 13.30 8.31 -92.71 -0.77 12.53 16 29 H 0.08 2.60 7.97 -2.39 -0.02 2.58 16 30 H 0.08 2.67 7.97 -2.39 -0.02 2.65 16 31 H 0.14 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.06 0.92 8.14 -2.38 -0.02 0.91 16 33 H 0.07 0.92 8.13 -2.39 -0.02 0.91 16 34 H 0.09 2.34 7.97 -2.39 -0.02 2.32 16 35 H 0.11 2.66 5.86 -2.39 -0.01 2.65 16 36 H 0.11 2.84 6.07 -2.39 -0.01 2.82 16 37 H 0.08 2.45 7.97 -2.39 -0.02 2.43 16 Total: -1.00 -70.56 307.55 6.55 -64.01 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: 1.09 Total: 15.38 kcal Atomic # 6 Polarization: 3.09 SS G_CDS: 5.03 Total: 8.12 kcal Atomic # 7 Polarization: -67.97 SS G_CDS: -1.38 Total: -69.34 kcal Atomic # 8 Polarization: -61.38 SS G_CDS: -0.22 Total: -61.61 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 2.03 Total: 43.44 kcal Total: -70.56 6.55 -64.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592587321.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.529 kcal (2) G-P(sol) polarization free energy of solvation -70.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds