Wall clock time and date at job start Mon Mar 30 2020 00:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34229 * 116.99652 * 2 1 4 4 O 1.20821 * 120.00407 * 359.97438 * 3 2 1 5 5 C 1.50705 * 119.99508 * 179.97438 * 3 2 1 6 6 C 1.54417 * 129.01046 * 179.97438 * 5 3 2 7 7 C 1.54415 * 78.96196 * 180.67932 * 6 5 3 8 8 C 1.50696 * 129.00917 * 179.33023 * 7 6 5 9 9 O 1.21279 * 120.00630 * 359.97438 * 8 7 6 10 10 N 1.34782 * 119.99717 * 180.02562 * 8 7 6 11 11 C 1.46496 * 120.00201 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.47535 * 179.97438 * 11 10 8 13 13 C 1.50696 * 109.47252 * 179.97438 * 12 11 10 14 14 H 1.07998 * 120.00561 * 0.02562 * 13 12 11 15 15 C 1.37883 * 119.99773 * 180.02562 * 13 12 11 16 16 N 1.31504 * 120.00148 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99710 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47536 * 60.00047 * 17 15 13 19 19 H 1.48501 * 109.47119 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.47265 * 299.99830 * 17 15 13 21 21 C 1.54890 * 84.49649 * 41.83543 * 7 6 5 22 22 C 1.54887 * 84.49331 * 318.10569 * 7 6 5 23 23 H 1.09002 * 109.47172 * 60.00460 * 1 2 3 24 24 H 1.09000 * 109.47521 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47463 * 300.00327 * 1 2 3 26 26 H 1.09002 * 114.93291 * 68.15966 * 6 5 3 27 27 H 1.09001 * 114.93352 * 293.19717 * 6 5 3 28 28 H 0.97006 * 120.00022 * 359.97438 * 10 8 7 29 29 H 1.09003 * 109.47015 * 299.99974 * 11 10 8 30 30 H 1.09003 * 109.47251 * 59.99487 * 11 10 8 31 31 H 1.08994 * 109.47193 * 300.00354 * 12 11 10 32 32 H 1.09003 * 109.46733 * 59.99828 * 12 11 10 33 33 H 0.97004 * 120.00045 * 180.02562 * 16 15 13 34 34 H 1.08999 * 114.97330 * 70.65224 * 21 7 6 35 35 H 1.09000 * 114.97845 * 205.76850 * 21 7 6 36 36 H 1.09006 * 114.97975 * 154.17274 * 22 7 6 37 37 H 1.08996 * 114.98180 * 289.34993 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.4742 2.5239 0.0002 7 6 5.5262 1.3937 -0.0166 8 6 7.0294 1.4974 -0.0435 9 8 7.5621 2.5869 -0.0552 10 7 7.7818 0.3792 -0.0555 11 6 9.2431 0.4798 -0.0810 12 6 9.8510 -0.9242 -0.0896 13 6 11.3542 -0.8206 -0.1164 14 1 11.8286 0.1496 -0.1260 15 6 12.1239 -1.9645 -0.1288 16 7 11.5463 -3.1459 -0.1177 17 14 13.9872 -1.8361 -0.1614 18 1 14.4540 -1.1026 1.0425 19 1 14.5772 -3.1988 -0.1699 20 1 14.4117 -1.1048 -1.3822 21 6 4.5748 0.7263 -1.0405 22 6 4.5944 0.7141 1.0172 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 4.4465 3.1124 0.9172 27 1 4.4298 3.1239 -0.9088 28 1 7.3558 -0.4922 -0.0465 29 1 9.5547 1.0166 -0.9770 30 1 9.5857 1.0184 0.8026 31 1 9.5394 -1.4605 0.8066 32 1 9.5084 -1.4630 -0.9730 33 1 12.0878 -3.9506 -0.1261 34 1 4.5362 1.2103 -2.0164 35 1 4.6417 -0.3605 -1.0905 36 1 4.6613 -0.3734 1.0522 37 1 4.5744 1.1864 1.9993 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592618127.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:52 Heat of formation + Delta-G solvation = -30.280340 kcal Electronic energy + Delta-G solvation = -19557.777515 eV Core-core repulsion = 16303.927687 eV Total energy + Delta-G solvation = -3253.849828 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.61987 -40.32669 -38.64730 -36.74936 -34.91602 -32.86697 -29.88111 -28.75734 -26.51198 -26.08301 -26.06112 -24.76550 -22.81131 -20.96401 -20.20674 -18.74482 -17.77409 -17.38559 -16.67202 -16.48334 -15.66504 -15.11907 -15.01954 -14.56041 -14.50535 -14.50428 -13.85326 -13.65868 -13.09575 -12.94724 -12.46826 -12.32700 -11.85380 -11.67472 -11.48446 -11.24912 -11.16499 -11.04130 -10.96915 -10.70423 -10.61853 -10.56319 -10.35642 -9.85534 -9.51813 -9.25494 -8.60392 -8.39923 -6.11646 -4.14690 1.71086 2.22331 2.65471 3.29954 3.33870 3.35842 3.47625 3.78603 3.96242 3.99356 4.17769 4.33234 4.39286 4.52211 4.75127 4.82920 5.03313 5.18781 5.23838 5.25516 5.30869 5.46565 5.57492 5.64420 5.65773 5.80276 5.98878 6.28890 6.29836 6.68539 6.82536 7.40946 7.48009 7.57923 7.86027 7.93218 8.24356 8.54815 8.90987 9.50308 10.99868 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.040274 B = 0.003090 C = 0.002914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.066835 B = 9060.627247 C = 9605.184980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.351 6.351 3 C 0.529 3.471 4 O -0.498 6.498 5 C -0.155 4.155 6 C -0.059 4.059 7 C -0.153 4.153 8 C 0.568 3.432 9 O -0.539 6.539 10 N -0.712 5.712 11 C 0.121 3.879 12 C 0.013 3.987 13 C -0.523 4.523 14 H 0.059 0.941 15 C 0.060 3.940 16 N -0.894 5.894 17 Si 0.897 3.103 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.275 1.275 21 C -0.078 4.078 22 C -0.075 4.075 23 H 0.064 0.936 24 H 0.104 0.896 25 H 0.064 0.936 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.399 0.601 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.023 0.977 32 H 0.023 0.977 33 H 0.263 0.737 34 H 0.087 0.913 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.621 3.745 0.310 20.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.267 6.267 3 C 0.372 3.628 4 O -0.384 6.384 5 C -0.157 4.157 6 C -0.097 4.097 7 C -0.157 4.157 8 C 0.352 3.648 9 O -0.416 6.416 10 N -0.361 5.361 11 C -0.001 4.001 12 C -0.024 4.024 13 C -0.562 4.562 14 H 0.077 0.923 15 C -0.142 4.142 16 N -0.533 5.533 17 Si 0.725 3.275 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.201 1.201 21 C -0.116 4.116 22 C -0.113 4.113 23 H 0.083 0.917 24 H 0.122 0.878 25 H 0.083 0.917 26 H 0.106 0.894 27 H 0.106 0.894 28 H 0.233 0.767 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.041 0.959 32 H 0.041 0.959 33 H 0.072 0.928 34 H 0.105 0.895 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -20.390 4.618 0.297 20.908 hybrid contribution 0.493 -0.460 -0.017 0.675 sum -19.896 4.158 0.280 20.328 Atomic orbital electron populations 1.23330 0.75822 1.03997 1.02696 1.86504 1.23601 1.32793 1.83811 1.21357 0.88193 0.81334 0.71951 1.90683 1.66284 1.36545 1.44933 1.23359 0.87035 1.02289 1.02982 1.23639 0.88478 0.93702 1.03855 1.23844 0.92266 0.99684 0.99867 1.18355 0.84822 0.84721 0.76870 1.90704 1.73279 1.27450 1.50192 1.46238 1.08864 1.08008 1.73022 1.21795 0.75582 1.01718 1.01008 1.19319 0.95918 0.89275 0.97917 1.21008 0.90779 0.92842 1.51577 0.92269 1.24989 0.99018 0.95284 0.94934 1.69937 1.35732 0.97394 1.50207 0.86569 0.85043 0.77102 0.78804 1.20099 1.21241 1.20094 1.24159 0.89675 1.01360 0.96393 1.24148 0.89406 1.01231 0.96491 0.91734 0.87766 0.91725 0.89412 0.89426 0.76706 0.92326 0.92334 0.95874 0.95875 0.92756 0.89485 0.88729 0.88731 0.89439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.23 10.56 101.05 1.07 1.30 16 2 O -0.35 -3.39 10.57 -39.25 -0.41 -3.80 16 3 C 0.53 5.92 8.07 36.01 0.29 6.21 16 4 O -0.50 -6.75 16.84 -18.75 -0.32 -7.07 16 5 C -0.16 -1.60 3.56 -171.84 -0.61 -2.22 16 6 C -0.06 -0.67 7.78 -26.71 -0.21 -0.88 16 7 C -0.15 -1.85 3.43 -172.00 -0.59 -2.44 16 8 C 0.57 9.30 7.94 -10.98 -0.09 9.21 16 9 O -0.54 -10.94 17.10 5.56 0.10 -10.84 16 10 N -0.71 -11.81 5.56 -60.29 -0.33 -12.14 16 11 C 0.12 2.48 5.61 -4.04 -0.02 2.45 16 12 C 0.01 0.32 5.09 -27.88 -0.14 0.17 16 13 C -0.52 -14.24 9.11 -34.44 -0.31 -14.56 16 14 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 15 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 16 N -0.89 -25.70 13.29 55.43 0.74 -24.96 16 17 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 18 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 19 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 21 C -0.08 -0.77 7.82 -28.13 -0.22 -0.99 16 22 C -0.08 -0.73 7.82 -28.08 -0.22 -0.95 16 23 H 0.06 0.41 8.13 -51.93 -0.42 -0.01 16 24 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.06 0.41 8.13 -51.93 -0.42 -0.02 16 26 H 0.09 0.97 7.97 -51.93 -0.41 0.56 16 27 H 0.09 0.98 7.97 -51.93 -0.41 0.56 16 28 H 0.40 5.65 8.47 -40.82 -0.35 5.30 16 29 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 31 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 34 H 0.09 0.82 7.97 -51.93 -0.41 0.41 16 35 H 0.09 0.79 7.84 -51.93 -0.41 0.39 16 36 H 0.09 0.79 7.84 -51.93 -0.41 0.38 16 37 H 0.09 0.81 7.97 -51.93 -0.41 0.40 16 LS Contribution 325.50 15.07 4.91 4.91 Total: -1.00 -32.50 325.50 -6.82 -39.32 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: -5.31 Total: -0.36 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: -1.16 Total: -1.13 kcal Atomic # 7 Polarization: -37.51 SS G_CDS: 0.40 Total: -37.11 kcal Atomic # 8 Polarization: -21.08 SS G_CDS: -0.64 Total: -21.71 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.50 -6.82 -39.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592618127.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.040 kcal (2) G-P(sol) polarization free energy of solvation -32.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds