Wall clock time and date at job start Mon Mar 30 2020 00:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34229 * 116.99652 * 2 1 4 4 O 1.20821 * 120.00407 * 359.97438 * 3 2 1 5 5 C 1.50705 * 119.99508 * 179.97438 * 3 2 1 6 6 C 1.54417 * 129.01046 * 179.97438 * 5 3 2 7 7 C 1.54415 * 78.96196 * 180.67932 * 6 5 3 8 8 C 1.50696 * 129.00917 * 179.33023 * 7 6 5 9 9 O 1.21279 * 120.00630 * 359.97438 * 8 7 6 10 10 N 1.34782 * 119.99717 * 180.02562 * 8 7 6 11 11 C 1.46496 * 120.00201 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.47535 * 179.97438 * 11 10 8 13 13 C 1.50696 * 109.47252 * 179.97438 * 12 11 10 14 14 H 1.07998 * 120.00561 * 0.02562 * 13 12 11 15 15 C 1.37883 * 119.99773 * 180.02562 * 13 12 11 16 16 N 1.31504 * 120.00148 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99710 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47536 * 60.00047 * 17 15 13 19 19 H 1.48501 * 109.47119 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.47265 * 299.99830 * 17 15 13 21 21 C 1.54890 * 84.49649 * 41.83543 * 7 6 5 22 22 C 1.54887 * 84.49331 * 318.10569 * 7 6 5 23 23 H 1.09002 * 109.47172 * 60.00460 * 1 2 3 24 24 H 1.09000 * 109.47521 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47463 * 300.00327 * 1 2 3 26 26 H 1.09002 * 114.93291 * 68.15966 * 6 5 3 27 27 H 1.09001 * 114.93352 * 293.19717 * 6 5 3 28 28 H 0.97006 * 120.00022 * 359.97438 * 10 8 7 29 29 H 1.09003 * 109.47015 * 299.99974 * 11 10 8 30 30 H 1.09003 * 109.47251 * 59.99487 * 11 10 8 31 31 H 1.08994 * 109.47193 * 300.00354 * 12 11 10 32 32 H 1.09003 * 109.46733 * 59.99828 * 12 11 10 33 33 H 0.97004 * 120.00045 * 180.02562 * 16 15 13 34 34 H 1.08999 * 114.97330 * 70.65224 * 21 7 6 35 35 H 1.09000 * 114.97845 * 205.76850 * 21 7 6 36 36 H 1.09006 * 114.97975 * 154.17274 * 22 7 6 37 37 H 1.08996 * 114.98180 * 289.34993 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.4742 2.5239 0.0002 7 6 5.5262 1.3937 -0.0166 8 6 7.0294 1.4974 -0.0435 9 8 7.5621 2.5869 -0.0552 10 7 7.7818 0.3792 -0.0555 11 6 9.2431 0.4798 -0.0810 12 6 9.8510 -0.9242 -0.0896 13 6 11.3542 -0.8206 -0.1164 14 1 11.8286 0.1496 -0.1260 15 6 12.1239 -1.9645 -0.1288 16 7 11.5463 -3.1459 -0.1177 17 14 13.9872 -1.8361 -0.1614 18 1 14.4540 -1.1026 1.0425 19 1 14.5772 -3.1988 -0.1699 20 1 14.4117 -1.1048 -1.3822 21 6 4.5748 0.7263 -1.0405 22 6 4.5944 0.7141 1.0172 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 4.4465 3.1124 0.9172 27 1 4.4298 3.1239 -0.9088 28 1 7.3558 -0.4922 -0.0465 29 1 9.5547 1.0166 -0.9770 30 1 9.5857 1.0184 0.8026 31 1 9.5394 -1.4605 0.8066 32 1 9.5084 -1.4630 -0.9730 33 1 12.0878 -3.9506 -0.1261 34 1 4.5362 1.2103 -2.0164 35 1 4.6417 -0.3605 -1.0905 36 1 4.6613 -0.3734 1.0522 37 1 4.5744 1.1864 1.9993 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592618127.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:52 Heat of formation + Delta-G solvation = -51.040860 kcal Electronic energy + Delta-G solvation = -19558.677759 eV Core-core repulsion = 16303.927687 eV Total energy + Delta-G solvation = -3254.750072 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.50078 -41.17291 -40.02730 -37.57191 -36.59182 -34.80207 -31.67940 -29.47510 -27.72789 -26.92435 -26.83776 -26.28206 -24.08862 -22.67429 -21.26272 -19.85349 -18.63500 -18.50066 -18.22706 -17.43338 -16.99029 -16.57080 -16.44990 -16.20223 -15.42433 -15.36373 -14.97897 -14.81053 -14.31591 -14.29895 -13.98040 -13.22727 -13.13314 -12.93596 -12.72220 -12.58013 -12.51132 -12.26079 -12.20549 -11.95399 -11.85163 -11.64156 -11.44573 -11.43612 -11.39061 -10.84248 -10.58150 -10.04544 -8.22247 -6.32212 0.86668 1.41415 1.43569 1.45379 1.47388 1.53388 2.17286 2.45150 2.93949 3.05657 3.12808 3.17731 3.30043 3.40309 3.66723 3.97827 4.30313 4.34164 4.46989 4.50325 4.52631 4.53141 4.67556 4.73517 4.81062 4.81301 4.86420 4.87761 4.93187 5.23620 5.27738 5.50047 5.61417 5.80743 6.18260 6.59490 6.61024 6.80923 7.22290 7.36959 8.89219 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.040274 B = 0.003090 C = 0.002914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.066835 B = 9060.627247 C = 9605.184980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.352 6.352 3 C 0.534 3.466 4 O -0.527 6.527 5 C -0.149 4.149 6 C -0.066 4.066 7 C -0.171 4.171 8 C 0.572 3.428 9 O -0.583 6.583 10 N -0.705 5.705 11 C 0.139 3.861 12 C 0.024 3.976 13 C -0.548 4.548 14 H 0.058 0.942 15 C 0.009 3.991 16 N -0.925 5.925 17 Si 0.962 3.038 18 H -0.269 1.269 19 H -0.281 1.281 20 H -0.269 1.269 21 C -0.065 4.065 22 C -0.061 4.061 23 H 0.064 0.936 24 H 0.134 0.866 25 H 0.065 0.935 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.413 0.587 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.011 0.989 32 H 0.011 0.989 33 H 0.266 0.734 34 H 0.091 0.909 35 H 0.116 0.884 36 H 0.117 0.883 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.365 2.942 0.337 21.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.267 6.267 3 C 0.378 3.622 4 O -0.417 6.417 5 C -0.150 4.150 6 C -0.104 4.104 7 C -0.174 4.174 8 C 0.358 3.642 9 O -0.463 6.463 10 N -0.355 5.355 11 C 0.016 3.984 12 C -0.014 4.014 13 C -0.587 4.587 14 H 0.076 0.924 15 C -0.190 4.190 16 N -0.565 5.565 17 Si 0.787 3.213 18 H -0.194 1.194 19 H -0.206 1.206 20 H -0.194 1.194 21 C -0.102 4.102 22 C -0.098 4.098 23 H 0.083 0.917 24 H 0.153 0.847 25 H 0.083 0.917 26 H 0.104 0.896 27 H 0.103 0.897 28 H 0.249 0.751 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.029 0.971 32 H 0.029 0.971 33 H 0.075 0.925 34 H 0.109 0.891 35 H 0.135 0.865 36 H 0.135 0.865 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -21.166 3.785 0.325 21.504 hybrid contribution 0.653 -0.215 -0.026 0.688 sum -20.513 3.571 0.300 20.823 Atomic orbital electron populations 1.23646 0.74064 1.06067 1.02810 1.86492 1.25318 1.31710 1.83227 1.21384 0.88290 0.81382 0.71166 1.90676 1.66920 1.37571 1.46498 1.23134 0.86853 1.01392 1.03631 1.23728 0.88685 0.94194 1.03787 1.23574 0.89509 1.01359 1.02937 1.18890 0.86534 0.83586 0.75185 1.90680 1.74624 1.28986 1.52021 1.46007 1.07279 1.09146 1.73070 1.21287 0.77932 0.99132 1.00057 1.19123 0.94844 0.90844 0.96570 1.21452 0.92630 0.92999 1.51588 0.92350 1.25826 1.03771 0.94940 0.94467 1.70036 1.37461 0.98028 1.50932 0.85545 0.79381 0.77325 0.79080 1.19429 1.20650 1.19421 1.24193 0.87621 1.02516 0.95886 1.24181 0.87278 1.02383 0.95983 0.91677 0.84744 0.91650 0.89576 0.89705 0.75054 0.93326 0.93324 0.97073 0.97086 0.92542 0.89101 0.86537 0.86520 0.88932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.56 113.37 1.20 1.49 16 2 O -0.35 -5.94 10.57 -51.40 -0.54 -6.49 16 3 C 0.53 11.01 8.07 71.24 0.57 11.59 16 4 O -0.53 -13.80 16.84 21.98 0.37 -13.43 16 5 C -0.15 -2.77 3.56 -63.41 -0.23 -3.00 16 6 C -0.07 -1.45 7.78 30.61 0.24 -1.21 16 7 C -0.17 -3.87 3.43 -63.51 -0.22 -4.09 16 8 C 0.57 18.43 7.94 87.65 0.70 19.13 16 9 O -0.58 -23.93 17.10 -3.03 -0.05 -23.98 16 10 N -0.71 -22.97 5.56 -463.06 -2.57 -25.54 16 11 C 0.14 5.76 5.61 86.38 0.48 6.24 16 12 C 0.02 1.15 5.09 29.85 0.15 1.30 16 13 C -0.55 -29.97 9.11 25.60 0.23 -29.74 16 14 H 0.06 3.12 7.74 -2.91 -0.02 3.10 16 15 C 0.01 0.49 5.46 84.66 0.46 0.95 16 16 N -0.93 -53.16 13.29 21.45 0.28 -52.88 16 17 Si 0.96 42.92 29.54 68.60 2.03 44.95 16 18 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 19 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 20 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 21 C -0.06 -1.11 7.82 29.69 0.23 -0.88 16 22 C -0.06 -1.04 7.82 29.72 0.23 -0.80 16 23 H 0.06 0.71 8.13 -2.39 -0.02 0.69 16 24 H 0.13 0.62 8.14 -2.39 -0.02 0.60 16 25 H 0.06 0.71 8.13 -2.39 -0.02 0.69 16 26 H 0.09 1.87 7.97 -2.39 -0.02 1.85 16 27 H 0.08 1.86 7.97 -2.39 -0.02 1.84 16 28 H 0.41 11.15 8.47 -92.70 -0.79 10.36 16 29 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.27 14.41 8.31 -92.71 -0.77 13.64 16 34 H 0.09 1.52 7.97 -2.39 -0.02 1.50 16 35 H 0.12 1.53 7.84 -2.39 -0.02 1.51 16 36 H 0.12 1.51 7.84 -2.38 -0.02 1.49 16 37 H 0.09 1.51 7.97 -2.39 -0.02 1.49 16 Total: -1.00 -69.68 325.50 3.86 -65.81 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: 0.29 Total: 10.57 kcal Atomic # 6 Polarization: -3.08 SS G_CDS: 4.06 Total: 0.98 kcal Atomic # 7 Polarization: -76.13 SS G_CDS: -2.29 Total: -78.41 kcal Atomic # 8 Polarization: -43.67 SS G_CDS: -0.22 Total: -43.90 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Total: -69.68 3.86 -65.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592618127.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.773 kcal (2) G-P(sol) polarization free energy of solvation -69.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds