Wall clock time and date at job start Mon Mar 30 2020 00:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34232 * 116.99936 * 2 1 4 4 O 1.20832 * 119.99700 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00351 * 179.97438 * 3 2 1 6 6 N 1.46502 * 109.47151 * 179.97438 * 5 3 2 7 7 C 1.37096 * 119.99749 * 264.08476 * 6 5 3 8 8 H 1.08001 * 119.99477 * 196.68910 * 7 6 5 9 9 C 1.38948 * 120.00463 * 16.68284 * 7 6 5 10 10 N 1.31412 * 119.99629 * 20.72280 * 9 7 6 11 11 Si 1.86796 * 120.00161 * 200.71713 * 9 7 6 12 12 H 1.48496 * 109.47462 * 0.02562 * 11 9 7 13 13 H 1.48505 * 109.47133 * 120.00467 * 11 9 7 14 14 H 1.48498 * 109.47532 * 240.00021 * 11 9 7 15 15 C 1.34769 * 119.99682 * 84.08697 * 6 5 3 16 16 O 1.21293 * 120.00605 * 359.97438 * 15 6 5 17 17 C 1.50700 * 119.99735 * 180.02562 * 15 6 5 18 18 C 1.53891 * 113.58863 * 180.02562 * 17 15 6 19 19 C 1.53261 * 86.88099 * 220.34499 * 18 17 15 20 20 C 1.52464 * 128.58284 * 165.11418 * 19 18 17 21 21 C 1.52596 * 128.57715 * 245.01046 * 19 18 17 22 22 C 1.53256 * 87.69249 * 25.07884 * 19 18 17 23 23 H 1.08994 * 109.46828 * 60.00661 * 1 2 3 24 24 H 1.09003 * 109.46654 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47284 * 300.00054 * 1 2 3 26 26 H 1.09006 * 109.46418 * 59.99780 * 5 3 2 27 27 H 1.08997 * 109.47321 * 300.00001 * 5 3 2 28 28 H 0.97005 * 119.99677 * 179.97438 * 10 9 7 29 29 H 1.09000 * 112.82897 * 311.10847 * 17 15 6 30 30 H 1.08998 * 113.64662 * 105.84604 * 18 17 15 31 31 H 1.08996 * 113.72970 * 334.85159 * 18 17 15 32 32 H 1.09002 * 117.50694 * 225.04178 * 20 19 18 33 33 H 1.08999 * 117.51378 * 10.10533 * 20 19 18 34 34 H 1.09003 * 117.53496 * 134.99185 * 21 19 18 35 35 H 1.08996 * 117.50724 * 349.85964 * 21 19 18 36 36 H 1.08997 * 113.64145 * 89.41863 * 22 19 18 37 37 H 1.09005 * 113.64345 * 220.41562 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2750 0.0006 6 7 3.9816 2.6799 -0.0002 7 6 4.2938 3.3018 -1.1814 8 1 4.8484 4.2285 -1.1736 9 6 3.8967 2.7399 -2.3886 10 7 2.9081 1.8745 -2.4168 11 14 4.7680 3.2146 -3.9712 12 1 5.8383 4.1992 -3.6710 13 1 5.3681 2.0044 -4.5881 14 1 3.7905 3.8171 -4.9129 15 6 4.0568 3.3609 1.1604 16 8 3.7802 2.8109 2.2055 17 6 4.4834 4.8063 1.1596 18 6 4.5188 5.4387 2.5621 19 6 3.9203 6.6947 1.9193 20 6 3.2691 7.8933 2.6004 21 6 4.5450 8.0794 1.7745 22 6 3.3445 5.7863 0.8275 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 3.9563 0.7806 -0.8892 27 1 3.9558 0.7811 0.8908 28 1 2.6307 1.4824 -3.2596 29 1 5.3907 4.9791 0.5806 30 1 5.5266 5.5844 2.9507 31 1 3.8543 4.9552 3.2782 32 1 2.3366 8.2673 2.1776 33 1 3.3561 7.9650 3.6846 34 1 4.4516 8.5758 0.8086 35 1 5.4713 8.2728 2.3155 36 1 2.3526 5.3986 1.0596 37 1 3.4110 6.2107 -0.1743 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597272951.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:40 Heat of formation + Delta-G solvation = -59.203380 kcal Electronic energy + Delta-G solvation = -21265.858295 eV Core-core repulsion = 18010.754270 eV Total energy + Delta-G solvation = -3255.104025 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.79531 -39.06701 -37.56559 -35.37291 -34.56707 -33.05062 -31.54048 -28.61598 -26.39918 -25.16820 -24.98827 -23.13794 -22.20366 -20.16381 -19.09415 -17.92492 -16.94347 -16.55905 -16.31415 -15.43793 -15.22026 -14.97533 -14.72143 -14.50775 -14.16289 -13.50962 -13.21028 -12.47691 -12.36462 -12.00757 -11.86399 -11.68180 -11.35019 -11.28633 -11.26173 -11.24006 -10.84898 -10.78340 -10.50091 -10.34407 -9.91671 -9.79610 -9.73046 -9.53800 -9.25020 -8.99608 -8.44749 -7.94395 -6.49060 -3.96859 3.07002 3.18859 3.22473 3.50440 3.72005 4.00293 4.02307 4.10609 4.65876 4.75518 4.97602 5.03820 5.26684 5.32589 5.54119 5.71415 5.79518 5.80137 5.96414 5.98966 6.02527 6.03682 6.13582 6.25253 6.30104 6.32181 6.42428 6.49416 6.56866 6.67904 6.80914 6.99626 7.37205 7.48563 7.61910 8.25929 8.99630 9.13476 9.39828 9.80340 10.58696 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.015538 B = 0.007871 C = 0.005920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.555906 B = 3556.333957 C = 4728.740015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.376 6.376 3 C 0.485 3.515 4 O -0.500 6.500 5 C 0.155 3.845 6 N -0.429 5.429 7 C -0.328 4.328 8 H 0.105 0.895 9 C 0.035 3.965 10 N -0.871 5.871 11 Si 0.923 3.077 12 H -0.268 1.268 13 H -0.279 1.279 14 H -0.283 1.283 15 C 0.480 3.520 16 O -0.602 6.602 17 C -0.103 4.103 18 C -0.077 4.077 19 C -0.161 4.161 20 C -0.171 4.171 21 C -0.155 4.155 22 C -0.067 4.067 23 H 0.055 0.945 24 H 0.085 0.915 25 H 0.049 0.951 26 H 0.123 0.877 27 H 0.080 0.920 28 H 0.271 0.729 29 H 0.102 0.898 30 H 0.062 0.938 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.313 3.344 2.804 4.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.294 6.294 3 C 0.326 3.674 4 O -0.384 6.384 5 C 0.030 3.970 6 N -0.147 5.147 7 C -0.455 4.455 8 H 0.122 0.878 9 C -0.169 4.169 10 N -0.509 5.509 11 Si 0.750 3.250 12 H -0.192 1.192 13 H -0.205 1.205 14 H -0.209 1.209 15 C 0.269 3.731 16 O -0.488 6.488 17 C -0.124 4.124 18 C -0.115 4.115 19 C -0.161 4.161 20 C -0.208 4.208 21 C -0.191 4.191 22 C -0.105 4.105 23 H 0.074 0.926 24 H 0.104 0.896 25 H 0.068 0.932 26 H 0.141 0.859 27 H 0.098 0.902 28 H 0.082 0.918 29 H 0.120 0.880 30 H 0.080 0.920 31 H 0.112 0.888 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.111 0.889 35 H 0.110 0.890 36 H 0.104 0.896 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.848 3.257 3.141 4.603 hybrid contribution -0.059 0.280 -1.210 1.243 sum 0.789 3.536 1.931 4.105 Atomic orbital electron populations 1.22923 0.78790 1.01759 1.01602 1.86459 1.21629 1.35582 1.85726 1.23984 0.92305 0.80534 0.70551 1.90506 1.66488 1.36367 1.45057 1.20488 0.87190 0.85892 1.03473 1.43441 1.57027 1.07899 1.06307 1.19662 1.34202 1.09535 0.82123 0.87754 1.25201 0.94977 0.97178 0.99551 1.69851 1.23070 1.30303 1.27694 0.85931 0.79323 0.78536 0.81259 1.19203 1.20506 1.20900 1.20062 0.81626 0.87840 0.83522 1.90516 1.55809 1.70271 1.32248 1.22195 1.00101 0.92297 0.97819 1.22379 1.00315 0.92434 0.96355 1.22373 1.03595 0.88775 1.01370 1.22748 0.96631 1.02805 0.98624 1.22742 0.96863 0.98029 1.01514 1.22221 0.98011 0.93428 0.96809 0.92639 0.89649 0.93195 0.85922 0.90160 0.91844 0.87965 0.91965 0.88776 0.89065 0.89135 0.88885 0.89018 0.89622 0.91092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.78 10.56 101.05 1.07 1.84 16 2 O -0.38 -8.27 10.57 -39.26 -0.41 -8.68 16 3 C 0.49 12.19 6.13 36.01 0.22 12.41 16 4 O -0.50 -13.98 15.79 -18.75 -0.30 -14.27 16 5 C 0.16 3.76 5.14 -5.19 -0.03 3.74 16 6 N -0.43 -10.73 2.18 -116.09 -0.25 -10.98 16 7 C -0.33 -8.10 9.13 -14.93 -0.14 -8.23 16 8 H 0.10 2.44 6.30 -52.49 -0.33 2.10 16 9 C 0.04 0.86 4.90 -17.47 -0.09 0.78 16 10 N -0.87 -22.44 9.24 55.50 0.51 -21.93 16 11 Si 0.92 19.11 29.60 -169.99 -5.03 14.08 16 12 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 13 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 14 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 15 C 0.48 11.69 6.95 -10.99 -0.08 11.62 16 16 O -0.60 -15.96 15.58 5.55 0.09 -15.88 16 17 C -0.10 -2.08 2.86 -90.85 -0.26 -2.34 16 18 C -0.08 -1.37 7.42 -26.13 -0.19 -1.56 16 19 C -0.16 -2.59 3.09 -154.72 -0.48 -3.07 16 20 C -0.17 -2.32 10.53 -26.94 -0.28 -2.61 16 21 C -0.15 -2.03 10.54 -26.87 -0.28 -2.32 16 22 C -0.07 -1.28 7.59 -26.14 -0.20 -1.48 16 23 H 0.05 1.02 8.13 -51.93 -0.42 0.60 16 24 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 25 H 0.05 0.87 8.13 -51.93 -0.42 0.45 16 26 H 0.12 2.94 6.35 -51.93 -0.33 2.61 16 27 H 0.08 1.83 7.61 -51.93 -0.40 1.43 16 28 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 29 H 0.10 1.94 7.22 -51.93 -0.38 1.57 16 30 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.09 1.83 7.43 -51.93 -0.39 1.44 16 32 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.09 1.84 8.09 -51.93 -0.42 1.41 16 37 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 313.67 15.07 4.73 4.73 Total: -1.00 -30.53 313.67 -6.58 -37.11 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -5.18 Total: 7.06 kcal Atomic # 6 Polarization: 9.51 SS G_CDS: -0.73 Total: 8.77 kcal Atomic # 7 Polarization: -33.17 SS G_CDS: 0.26 Total: -32.91 kcal Atomic # 8 Polarization: -38.21 SS G_CDS: -0.62 Total: -38.83 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.03 Total: 14.08 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.53 -6.58 -37.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597272951.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.095 kcal (2) G-P(sol) polarization free energy of solvation -30.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds