Wall clock time and date at job start Mon Mar 30 2020 00:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34232 * 116.99936 * 2 1 4 4 O 1.20832 * 119.99700 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00351 * 179.97438 * 3 2 1 6 6 N 1.46502 * 109.47151 * 179.97438 * 5 3 2 7 7 C 1.37096 * 119.99749 * 264.08476 * 6 5 3 8 8 H 1.08001 * 119.99477 * 196.68910 * 7 6 5 9 9 C 1.38948 * 120.00463 * 16.68284 * 7 6 5 10 10 N 1.31412 * 119.99629 * 20.72280 * 9 7 6 11 11 Si 1.86796 * 120.00161 * 200.71713 * 9 7 6 12 12 H 1.48496 * 109.47462 * 0.02562 * 11 9 7 13 13 H 1.48505 * 109.47133 * 120.00467 * 11 9 7 14 14 H 1.48498 * 109.47532 * 240.00021 * 11 9 7 15 15 C 1.34769 * 119.99682 * 84.08697 * 6 5 3 16 16 O 1.21293 * 120.00605 * 359.97438 * 15 6 5 17 17 C 1.50700 * 119.99735 * 180.02562 * 15 6 5 18 18 C 1.53891 * 113.58863 * 180.02562 * 17 15 6 19 19 C 1.53261 * 86.88099 * 220.34499 * 18 17 15 20 20 C 1.52464 * 128.58284 * 165.11418 * 19 18 17 21 21 C 1.52596 * 128.57715 * 245.01046 * 19 18 17 22 22 C 1.53256 * 87.69249 * 25.07884 * 19 18 17 23 23 H 1.08994 * 109.46828 * 60.00661 * 1 2 3 24 24 H 1.09003 * 109.46654 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47284 * 300.00054 * 1 2 3 26 26 H 1.09006 * 109.46418 * 59.99780 * 5 3 2 27 27 H 1.08997 * 109.47321 * 300.00001 * 5 3 2 28 28 H 0.97005 * 119.99677 * 179.97438 * 10 9 7 29 29 H 1.09000 * 112.82897 * 311.10847 * 17 15 6 30 30 H 1.08998 * 113.64662 * 105.84604 * 18 17 15 31 31 H 1.08996 * 113.72970 * 334.85159 * 18 17 15 32 32 H 1.09002 * 117.50694 * 225.04178 * 20 19 18 33 33 H 1.08999 * 117.51378 * 10.10533 * 20 19 18 34 34 H 1.09003 * 117.53496 * 134.99185 * 21 19 18 35 35 H 1.08996 * 117.50724 * 349.85964 * 21 19 18 36 36 H 1.08997 * 113.64145 * 89.41863 * 22 19 18 37 37 H 1.09005 * 113.64345 * 220.41562 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2750 0.0006 6 7 3.9816 2.6799 -0.0002 7 6 4.2938 3.3018 -1.1814 8 1 4.8484 4.2285 -1.1736 9 6 3.8967 2.7399 -2.3886 10 7 2.9081 1.8745 -2.4168 11 14 4.7680 3.2146 -3.9712 12 1 5.8383 4.1992 -3.6710 13 1 5.3681 2.0044 -4.5881 14 1 3.7905 3.8171 -4.9129 15 6 4.0568 3.3609 1.1604 16 8 3.7802 2.8109 2.2055 17 6 4.4834 4.8063 1.1596 18 6 4.5188 5.4387 2.5621 19 6 3.9203 6.6947 1.9193 20 6 3.2691 7.8933 2.6004 21 6 4.5450 8.0794 1.7745 22 6 3.3445 5.7863 0.8275 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 3.9563 0.7806 -0.8892 27 1 3.9558 0.7811 0.8908 28 1 2.6307 1.4824 -3.2596 29 1 5.3907 4.9791 0.5806 30 1 5.5266 5.5844 2.9507 31 1 3.8543 4.9552 3.2782 32 1 2.3366 8.2673 2.1776 33 1 3.3561 7.9650 3.6846 34 1 4.4516 8.5758 0.8086 35 1 5.4713 8.2728 2.3155 36 1 2.3526 5.3986 1.0596 37 1 3.4110 6.2107 -0.1743 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597272951.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:40 Heat of formation + Delta-G solvation = -76.056240 kcal Electronic energy + Delta-G solvation = -21266.589090 eV Core-core repulsion = 18010.754270 eV Total energy + Delta-G solvation = -3255.834820 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.54106 -40.79076 -39.20911 -37.25771 -36.51841 -34.40033 -33.45889 -30.43315 -28.00650 -26.88428 -26.62185 -24.77800 -23.25265 -22.00279 -20.95268 -19.29039 -18.72945 -18.46908 -18.14531 -17.27039 -17.00366 -16.29661 -16.24368 -16.15627 -15.80739 -15.19976 -14.94286 -14.25763 -14.08266 -13.64143 -13.44600 -13.19913 -13.09990 -12.93273 -12.86149 -12.57070 -12.35673 -12.26815 -12.23644 -12.00116 -11.59452 -11.52817 -11.16254 -11.13201 -10.94123 -10.54633 -10.26434 -9.88449 -8.36643 -5.90968 1.40595 1.49936 1.62488 1.68247 1.79027 2.22963 2.34305 2.77800 2.98526 3.14385 3.49325 3.73254 3.94965 4.00425 4.06825 4.23505 4.33154 4.38928 4.40249 4.53994 4.61241 4.67956 4.78521 4.81347 4.83563 4.88249 4.90150 5.02314 5.09169 5.33559 5.36136 5.48050 5.51206 5.62286 5.73201 6.34940 7.08610 7.20164 7.50087 7.90519 8.71236 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.015538 B = 0.007871 C = 0.005920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.555906 B = 3556.333957 C = 4728.740015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.377 6.377 3 C 0.486 3.514 4 O -0.537 6.537 5 C 0.151 3.849 6 N -0.438 5.438 7 C -0.343 4.343 8 H 0.116 0.884 9 C -0.007 4.007 10 N -0.899 5.899 11 Si 0.993 3.007 12 H -0.253 1.253 13 H -0.276 1.276 14 H -0.290 1.290 15 C 0.465 3.535 16 O -0.634 6.634 17 C -0.107 4.107 18 C -0.070 4.070 19 C -0.176 4.176 20 C -0.164 4.164 21 C -0.129 4.129 22 C -0.068 4.068 23 H 0.045 0.955 24 H 0.135 0.865 25 H 0.049 0.951 26 H 0.122 0.878 27 H 0.087 0.913 28 H 0.270 0.730 29 H 0.117 0.883 30 H 0.085 0.915 31 H 0.068 0.932 32 H 0.096 0.904 33 H 0.105 0.895 34 H 0.104 0.896 35 H 0.113 0.887 36 H 0.049 0.951 37 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.428 4.759 2.390 5.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.294 6.294 3 C 0.329 3.671 4 O -0.425 6.425 5 C 0.025 3.975 6 N -0.156 5.156 7 C -0.470 4.470 8 H 0.133 0.867 9 C -0.208 4.208 10 N -0.538 5.538 11 Si 0.817 3.183 12 H -0.177 1.177 13 H -0.201 1.201 14 H -0.216 1.216 15 C 0.257 3.743 16 O -0.522 6.522 17 C -0.128 4.128 18 C -0.108 4.108 19 C -0.176 4.176 20 C -0.201 4.201 21 C -0.166 4.166 22 C -0.106 4.106 23 H 0.064 0.936 24 H 0.153 0.847 25 H 0.068 0.932 26 H 0.140 0.860 27 H 0.105 0.895 28 H 0.080 0.920 29 H 0.135 0.865 30 H 0.103 0.897 31 H 0.087 0.913 32 H 0.114 0.886 33 H 0.123 0.877 34 H 0.123 0.877 35 H 0.132 0.868 36 H 0.068 0.932 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.970 4.656 2.731 5.746 hybrid contribution -0.518 -0.243 -1.056 1.201 sum 1.452 4.413 1.675 4.939 Atomic orbital electron populations 1.23290 0.76212 1.04886 1.01134 1.86425 1.24123 1.33840 1.85048 1.24114 0.92664 0.80769 0.69525 1.90477 1.67337 1.37692 1.47003 1.20554 0.87088 0.86195 1.03631 1.43700 1.56878 1.08191 1.06829 1.20028 1.34502 1.10194 0.82232 0.86654 1.26088 0.95163 0.97058 1.02470 1.69960 1.24164 1.31368 1.28307 0.84865 0.78152 0.78450 0.76804 1.17659 1.20133 1.21649 1.20887 0.81125 0.89418 0.82920 1.90473 1.57217 1.71351 1.33191 1.22319 1.00790 0.89533 1.00121 1.22234 1.01168 0.92913 0.94485 1.22156 1.05676 0.89419 1.00365 1.22899 0.97421 1.00109 0.99671 1.22920 0.97401 0.94155 1.02130 1.22061 0.95973 0.94378 0.98146 0.93620 0.84700 0.93209 0.85985 0.89466 0.91961 0.86550 0.89687 0.91321 0.88593 0.87671 0.87723 0.86828 0.93224 0.90930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.34 10.56 113.37 1.20 2.53 16 2 O -0.38 -16.70 10.57 -51.44 -0.54 -17.24 16 3 C 0.49 25.09 6.13 71.24 0.44 25.53 16 4 O -0.54 -31.12 15.79 21.95 0.35 -30.78 16 5 C 0.15 7.53 5.14 85.63 0.44 7.97 16 6 N -0.44 -22.46 2.18 -639.60 -1.39 -23.85 16 7 C -0.34 -16.99 9.13 84.04 0.77 -16.23 16 8 H 0.12 5.32 6.30 -2.91 -0.02 5.30 16 9 C -0.01 -0.32 4.90 84.93 0.42 0.10 16 10 N -0.90 -46.89 9.24 21.66 0.20 -46.69 16 11 Si 0.99 38.70 29.60 68.60 2.03 40.73 16 12 H -0.25 -9.20 7.11 99.48 0.71 -8.49 16 13 H -0.28 -10.53 7.11 99.48 0.71 -9.82 16 14 H -0.29 -11.59 7.11 99.48 0.71 -10.88 16 15 C 0.47 23.29 6.95 87.66 0.61 23.90 16 16 O -0.63 -34.81 15.58 -3.07 -0.05 -34.86 16 17 C -0.11 -4.31 2.86 -10.94 -0.03 -4.35 16 18 C -0.07 -2.45 7.42 30.98 0.23 -2.22 16 19 C -0.18 -5.38 3.09 -52.32 -0.16 -5.54 16 20 C -0.16 -4.01 10.53 30.46 0.32 -3.69 16 21 C -0.13 -2.91 10.54 30.50 0.32 -2.59 16 22 C -0.07 -2.61 7.59 30.98 0.24 -2.38 16 23 H 0.04 1.67 8.13 -2.39 -0.02 1.66 16 24 H 0.13 3.32 8.14 -2.39 -0.02 3.30 16 25 H 0.05 1.73 8.13 -2.39 -0.02 1.71 16 26 H 0.12 6.01 6.35 -2.38 -0.02 5.99 16 27 H 0.09 4.11 7.61 -2.39 -0.02 4.09 16 28 H 0.27 13.48 8.31 -92.70 -0.77 12.71 16 29 H 0.12 4.31 7.22 -2.39 -0.02 4.30 16 30 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 31 H 0.07 2.72 7.43 -2.39 -0.02 2.71 16 32 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 33 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.05 2.23 8.09 -2.39 -0.02 2.21 16 37 H 0.07 2.69 8.14 -2.38 -0.02 2.67 16 Total: -1.00 -67.39 313.67 6.44 -60.94 By element: Atomic # 1 Polarization: 27.62 SS G_CDS: 1.07 Total: 28.69 kcal Atomic # 6 Polarization: 18.26 SS G_CDS: 4.78 Total: 23.04 kcal Atomic # 7 Polarization: -69.35 SS G_CDS: -1.19 Total: -70.54 kcal Atomic # 8 Polarization: -82.63 SS G_CDS: -0.24 Total: -82.87 kcal Atomic # 14 Polarization: 38.70 SS G_CDS: 2.03 Total: 40.73 kcal Total: -67.39 6.44 -60.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597272951.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.113 kcal (2) G-P(sol) polarization free energy of solvation -67.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds