Wall clock time and date at job start Mon Mar 30 2020 00:35:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46506 * 109.47236 * 2 1 4 4 C 1.46495 * 120.00338 * 265.13304 * 3 2 1 5 5 C 1.50691 * 109.46995 * 263.19384 * 4 3 2 6 6 H 1.07998 * 120.00292 * 359.97438 * 5 4 3 7 7 C 1.37884 * 119.99774 * 179.97438 * 5 4 3 8 8 N 1.31514 * 120.00102 * 0.02562 * 7 5 4 9 9 Si 1.86807 * 119.99795 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.46619 * 90.00181 * 9 7 5 11 11 H 1.48501 * 109.46954 * 209.99915 * 9 7 5 12 12 H 1.48494 * 109.47224 * 330.00142 * 9 7 5 13 13 C 1.34779 * 119.99615 * 85.12977 * 3 2 1 14 14 O 1.21692 * 120.00264 * 3.86257 * 13 3 2 15 15 C 1.46661 * 119.99667 * 183.86307 * 13 3 2 16 16 C 1.36547 * 125.98704 * 173.42755 * 15 13 3 17 17 C 1.40360 * 106.70898 * 180.02562 * 16 15 13 18 18 C 1.50701 * 126.44107 * 179.72872 * 17 16 15 19 19 O 1.42895 * 109.47305 * 0.02955 * 18 17 16 20 20 C 1.35126 * 107.11372 * 0.02562 * 17 16 15 21 21 C 1.50700 * 125.61641 * 179.97438 * 20 17 16 22 22 O 1.33935 * 108.76970 * 359.97438 * 20 17 16 23 23 H 1.08997 * 109.47480 * 300.00235 * 1 2 3 24 24 H 1.09001 * 109.47297 * 59.99983 * 1 2 3 25 25 H 1.08995 * 109.46967 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47546 * 240.00299 * 2 1 3 27 27 H 1.09001 * 109.47297 * 120.00017 * 2 1 3 28 28 H 1.09007 * 109.46652 * 23.19283 * 4 3 2 29 29 H 1.08995 * 109.47239 * 143.18578 * 4 3 2 30 30 H 0.97001 * 119.99878 * 180.02562 * 8 7 5 31 31 H 1.08004 * 126.64627 * 0.03307 * 16 15 13 32 32 H 1.09005 * 109.46481 * 120.02613 * 18 17 16 33 33 H 1.08995 * 109.47364 * 240.02620 * 18 17 16 34 34 H 0.96695 * 114.00135 * 179.97438 * 19 18 17 35 35 H 1.09000 * 109.47698 * 89.99586 * 21 20 17 36 36 H 1.09001 * 109.47035 * 209.99952 * 21 20 17 37 37 H 1.09007 * 109.47115 * 329.99108 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.3640 2.0360 -1.2641 5 6 3.8497 1.9318 -1.4939 6 1 4.4740 1.4286 -0.7705 7 6 4.4119 2.4790 -2.6278 8 7 3.6517 3.0922 -3.5084 9 14 6.2537 2.3504 -2.9123 10 1 6.5524 1.1059 -3.6657 11 1 6.7170 3.5252 -3.6935 12 1 6.9556 2.3177 -1.6042 13 6 2.1495 2.0496 1.1630 14 8 1.9298 1.4841 2.2179 15 6 2.5571 3.4584 1.1572 16 6 2.6060 4.2840 2.2437 17 6 3.0466 5.5339 1.7814 18 6 3.2533 6.7738 2.6126 19 8 2.9300 6.4927 3.9758 20 6 3.2443 5.4181 0.4497 21 6 3.7194 6.5168 -0.4659 22 8 2.9485 4.1660 0.0773 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.8346 1.5482 -2.0826 29 1 2.0759 3.0863 -1.2199 30 1 4.0472 3.4768 -4.3063 31 1 2.3545 4.0253 3.2618 32 1 4.2948 7.0880 2.5435 33 1 2.6081 7.5707 2.2430 34 1 3.0405 7.2476 4.5699 35 1 4.8080 6.5014 -0.5177 36 1 3.3060 6.3632 -1.4627 37 1 3.3875 7.4805 -0.0796 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601009100.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:35:16 Heat of formation + Delta-G solvation = -72.021420 kcal Electronic energy + Delta-G solvation = -21094.055851 eV Core-core repulsion = 17838.395994 eV Total energy + Delta-G solvation = -3255.659857 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.09251 -38.80672 -36.86256 -35.28767 -33.02724 -32.73012 -31.51830 -30.41422 -27.56072 -26.92219 -25.56034 -23.04185 -22.94645 -20.90957 -20.08916 -18.59647 -17.10305 -16.86646 -16.30619 -15.77971 -15.56355 -15.01964 -14.58286 -14.37683 -14.03185 -13.74245 -13.36571 -12.96748 -12.74865 -12.59495 -12.40890 -12.29679 -11.98836 -11.62648 -11.61486 -11.35117 -11.12816 -10.95771 -10.68951 -10.45722 -10.39518 -10.08622 -9.75258 -9.40562 -9.07205 -8.50041 -7.95268 -7.62467 -6.12576 -4.17065 1.78629 2.75915 3.23436 3.30135 3.33921 3.37182 3.95509 3.97505 4.26930 4.38013 5.08402 5.16623 5.21592 5.33390 5.46082 5.51757 5.61958 5.68793 5.78498 5.79326 5.87172 6.01560 6.11612 6.23642 6.38401 6.40568 6.53984 6.63211 6.76067 6.93286 7.31253 7.50547 7.63943 7.70139 7.81891 8.11391 8.25198 8.81196 8.94163 9.47950 10.94795 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.013269 B = 0.008908 C = 0.005955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2109.661516 B = 3142.387429 C = 4701.174966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.115 3.885 3 N -0.587 5.587 4 C 0.232 3.768 5 C -0.525 4.525 6 H 0.057 0.943 7 C 0.069 3.931 8 N -0.891 5.891 9 Si 0.891 3.109 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.598 3.402 14 O -0.557 6.557 15 C -0.059 4.059 16 C -0.116 4.116 17 C -0.216 4.216 18 C 0.158 3.842 19 O -0.566 6.566 20 C 0.018 3.982 21 C -0.077 4.077 22 O -0.099 6.099 23 H 0.055 0.945 24 H 0.055 0.945 25 H 0.059 0.941 26 H 0.081 0.919 27 H 0.072 0.928 28 H 0.039 0.961 29 H 0.052 0.948 30 H 0.263 0.737 31 H 0.153 0.847 32 H 0.053 0.947 33 H 0.052 0.948 34 H 0.377 0.623 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.025 7.061 6.214 9.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.008 4.008 3 N -0.316 5.316 4 C 0.113 3.887 5 C -0.563 4.563 6 H 0.076 0.924 7 C -0.134 4.134 8 N -0.530 5.530 9 Si 0.718 3.282 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.386 3.614 14 O -0.440 6.440 15 C -0.112 4.112 16 C -0.137 4.137 17 C -0.217 4.217 18 C 0.080 3.920 19 O -0.371 6.371 20 C -0.037 4.037 21 C -0.133 4.133 22 O 0.008 5.992 23 H 0.074 0.926 24 H 0.075 0.925 25 H 0.078 0.922 26 H 0.099 0.901 27 H 0.090 0.910 28 H 0.057 0.943 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.171 0.829 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.223 0.777 35 H 0.100 0.900 36 H 0.105 0.895 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.249 6.109 5.958 8.825 hybrid contribution 1.264 0.599 -0.053 1.400 sum -0.985 6.708 5.905 8.991 Atomic orbital electron populations 1.22127 0.96617 1.01426 1.02110 1.21309 0.93548 0.83149 1.02755 1.48241 1.61676 1.13357 1.08295 1.19692 0.96246 0.93778 0.78967 1.21391 0.92343 1.36509 1.06092 0.92449 1.24832 0.97955 0.94871 0.95699 1.69929 1.35194 1.37006 1.10859 0.86609 0.85544 0.77714 0.78314 1.20560 1.21050 1.19883 1.16653 0.77504 0.83105 0.84094 1.90753 1.54376 1.67513 1.31317 1.22012 1.09521 0.93955 0.85685 1.21460 1.01705 0.91368 0.99190 1.19755 1.11885 0.96809 0.93267 1.20159 0.98215 0.92813 0.80808 1.86525 1.91321 1.40805 1.18407 1.22459 1.01400 0.86340 0.93477 1.20334 1.01849 0.92289 0.98837 1.84757 1.62387 1.18909 1.33155 0.92635 0.92549 0.92171 0.90098 0.90969 0.94346 0.93012 0.92756 0.82929 0.92941 0.92996 0.77657 0.89981 0.89548 0.90144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.67 10.21 37.16 0.38 -2.29 16 2 C 0.12 2.20 6.08 -4.04 -0.02 2.17 16 3 N -0.59 -13.27 2.49 -176.62 -0.44 -13.71 16 4 C 0.23 5.77 4.74 -5.20 -0.02 5.75 16 5 C -0.52 -14.09 8.39 -34.44 -0.29 -14.38 16 6 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 7 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 8 N -0.89 -24.40 13.29 55.43 0.74 -23.67 16 9 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 13 C 0.60 14.04 7.54 -12.86 -0.10 13.94 16 14 O -0.56 -13.59 16.51 5.20 0.09 -13.50 16 15 C -0.06 -1.33 6.74 -36.79 -0.25 -1.58 16 16 C -0.12 -2.37 9.98 -39.39 -0.39 -2.76 16 17 C -0.22 -3.81 6.10 -104.93 -0.64 -4.45 16 18 C 0.16 2.04 7.08 36.01 0.25 2.29 16 19 O -0.57 -7.33 13.08 -35.23 -0.46 -7.79 16 20 C 0.02 0.33 7.31 -35.41 -0.26 0.07 16 21 C -0.08 -1.09 10.21 36.01 0.37 -0.72 16 22 O -0.10 -2.25 6.59 5.00 0.03 -2.22 16 23 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 24 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.08 1.47 8.03 -51.93 -0.42 1.06 16 27 H 0.07 1.37 7.52 -51.93 -0.39 0.98 16 28 H 0.04 0.98 8.02 -51.93 -0.42 0.56 16 29 H 0.05 1.36 5.43 -51.93 -0.28 1.08 16 30 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 31 H 0.15 3.04 7.98 -52.48 -0.42 2.62 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.38 2.68 9.12 45.56 0.42 3.09 16 35 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.08 0.85 7.86 -51.93 -0.41 0.44 16 LS Contribution 319.72 15.07 4.82 4.82 Total: -1.00 -32.25 319.72 -5.74 -37.99 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -4.42 Total: 2.43 kcal Atomic # 6 Polarization: 0.85 SS G_CDS: -1.07 Total: -0.22 kcal Atomic # 7 Polarization: -37.68 SS G_CDS: 0.30 Total: -37.38 kcal Atomic # 8 Polarization: -23.17 SS G_CDS: -0.34 Total: -23.51 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -32.25 -5.74 -37.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601009100.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.032 kcal (2) G-P(sol) polarization free energy of solvation -32.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds