Wall clock time and date at job start Mon Mar 30 2020 00:35:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46506 * 109.47236 * 2 1 4 4 C 1.46495 * 120.00338 * 265.13304 * 3 2 1 5 5 C 1.50691 * 109.46995 * 263.19384 * 4 3 2 6 6 H 1.07998 * 120.00292 * 359.97438 * 5 4 3 7 7 C 1.37884 * 119.99774 * 179.97438 * 5 4 3 8 8 N 1.31514 * 120.00102 * 0.02562 * 7 5 4 9 9 Si 1.86807 * 119.99795 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.46619 * 90.00181 * 9 7 5 11 11 H 1.48501 * 109.46954 * 209.99915 * 9 7 5 12 12 H 1.48494 * 109.47224 * 330.00142 * 9 7 5 13 13 C 1.34779 * 119.99615 * 85.12977 * 3 2 1 14 14 O 1.21692 * 120.00264 * 3.86257 * 13 3 2 15 15 C 1.46661 * 119.99667 * 183.86307 * 13 3 2 16 16 C 1.36547 * 125.98704 * 173.42755 * 15 13 3 17 17 C 1.40360 * 106.70898 * 180.02562 * 16 15 13 18 18 C 1.50701 * 126.44107 * 179.72872 * 17 16 15 19 19 O 1.42895 * 109.47305 * 0.02955 * 18 17 16 20 20 C 1.35126 * 107.11372 * 0.02562 * 17 16 15 21 21 C 1.50700 * 125.61641 * 179.97438 * 20 17 16 22 22 O 1.33935 * 108.76970 * 359.97438 * 20 17 16 23 23 H 1.08997 * 109.47480 * 300.00235 * 1 2 3 24 24 H 1.09001 * 109.47297 * 59.99983 * 1 2 3 25 25 H 1.08995 * 109.46967 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47546 * 240.00299 * 2 1 3 27 27 H 1.09001 * 109.47297 * 120.00017 * 2 1 3 28 28 H 1.09007 * 109.46652 * 23.19283 * 4 3 2 29 29 H 1.08995 * 109.47239 * 143.18578 * 4 3 2 30 30 H 0.97001 * 119.99878 * 180.02562 * 8 7 5 31 31 H 1.08004 * 126.64627 * 0.03307 * 16 15 13 32 32 H 1.09005 * 109.46481 * 120.02613 * 18 17 16 33 33 H 1.08995 * 109.47364 * 240.02620 * 18 17 16 34 34 H 0.96695 * 114.00135 * 179.97438 * 19 18 17 35 35 H 1.09000 * 109.47698 * 89.99586 * 21 20 17 36 36 H 1.09001 * 109.47035 * 209.99952 * 21 20 17 37 37 H 1.09007 * 109.47115 * 329.99108 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.3640 2.0360 -1.2641 5 6 3.8497 1.9318 -1.4939 6 1 4.4740 1.4286 -0.7705 7 6 4.4119 2.4790 -2.6278 8 7 3.6517 3.0922 -3.5084 9 14 6.2537 2.3504 -2.9123 10 1 6.5524 1.1059 -3.6657 11 1 6.7170 3.5252 -3.6935 12 1 6.9556 2.3177 -1.6042 13 6 2.1495 2.0496 1.1630 14 8 1.9298 1.4841 2.2179 15 6 2.5571 3.4584 1.1572 16 6 2.6060 4.2840 2.2437 17 6 3.0466 5.5339 1.7814 18 6 3.2533 6.7738 2.6126 19 8 2.9300 6.4927 3.9758 20 6 3.2443 5.4181 0.4497 21 6 3.7194 6.5168 -0.4659 22 8 2.9485 4.1660 0.0773 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.8346 1.5482 -2.0826 29 1 2.0759 3.0863 -1.2199 30 1 4.0472 3.4768 -4.3063 31 1 2.3545 4.0253 3.2618 32 1 4.2948 7.0880 2.5435 33 1 2.6081 7.5707 2.2430 34 1 3.0405 7.2476 4.5699 35 1 4.8080 6.5014 -0.5177 36 1 3.3060 6.3632 -1.4627 37 1 3.3875 7.4805 -0.0796 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601009100.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:35:16 Heat of formation + Delta-G solvation = -94.563008 kcal Electronic energy + Delta-G solvation = -21095.033328 eV Core-core repulsion = 17838.395994 eV Total energy + Delta-G solvation = -3256.637334 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.63340 -40.57652 -37.87377 -37.08427 -34.73996 -34.36703 -33.01502 -31.96629 -29.12970 -28.57536 -26.86895 -25.02112 -24.41052 -22.44171 -21.62885 -20.14908 -18.79593 -18.17015 -18.01446 -17.39331 -17.29435 -16.63130 -16.21059 -15.86926 -15.41374 -15.13426 -14.72164 -14.52363 -14.33191 -14.01804 -13.95333 -13.75988 -13.59453 -13.18430 -13.17782 -12.76155 -12.74070 -12.56373 -12.36195 -12.18901 -11.83300 -11.75092 -11.42780 -11.22441 -10.57617 -10.45983 -9.66367 -9.20988 -8.17531 -6.29451 0.15844 1.31942 1.37716 1.39769 1.49445 1.82585 2.20588 2.30419 2.45797 3.12820 3.30827 3.58622 3.87572 4.08796 4.18026 4.33607 4.38931 4.48673 4.48714 4.60506 4.69302 4.73216 4.74867 4.78359 4.92388 4.95648 5.01182 5.11264 5.23401 5.33569 5.54482 5.67076 5.75947 6.06858 6.12935 6.39734 6.78043 7.01573 7.10612 7.39014 8.89181 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.013269 B = 0.008908 C = 0.005955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2109.661516 B = 3142.387429 C = 4701.174966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.107 3.893 3 N -0.591 5.591 4 C 0.250 3.750 5 C -0.536 4.536 6 H 0.039 0.961 7 C 0.033 3.967 8 N -0.912 5.912 9 Si 0.948 3.052 10 H -0.274 1.274 11 H -0.272 1.272 12 H -0.281 1.281 13 C 0.591 3.409 14 O -0.578 6.578 15 C -0.101 4.101 16 C -0.114 4.114 17 C -0.214 4.214 18 C 0.159 3.841 19 O -0.590 6.590 20 C 0.010 3.990 21 C -0.074 4.074 22 O -0.131 6.131 23 H 0.042 0.958 24 H 0.053 0.947 25 H 0.095 0.905 26 H 0.087 0.913 27 H 0.070 0.930 28 H 0.027 0.973 29 H 0.038 0.962 30 H 0.268 0.732 31 H 0.151 0.849 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.403 0.597 35 H 0.094 0.906 36 H 0.071 0.929 37 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.251 8.707 6.284 10.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.015 4.015 3 N -0.319 5.319 4 C 0.130 3.870 5 C -0.575 4.575 6 H 0.057 0.943 7 C -0.168 4.168 8 N -0.551 5.551 9 Si 0.773 3.227 10 H -0.199 1.199 11 H -0.196 1.196 12 H -0.206 1.206 13 C 0.380 3.620 14 O -0.462 6.462 15 C -0.153 4.153 16 C -0.135 4.135 17 C -0.215 4.215 18 C 0.082 3.918 19 O -0.399 6.399 20 C -0.044 4.044 21 C -0.130 4.130 22 O -0.025 6.025 23 H 0.061 0.939 24 H 0.073 0.927 25 H 0.113 0.887 26 H 0.105 0.895 27 H 0.089 0.911 28 H 0.045 0.955 29 H 0.056 0.944 30 H 0.077 0.923 31 H 0.169 0.831 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.253 0.747 35 H 0.112 0.888 36 H 0.090 0.910 37 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -1.485 7.762 6.035 9.944 hybrid contribution 1.020 0.150 -0.029 1.032 sum -0.464 7.912 6.006 9.945 Atomic orbital electron populations 1.22031 0.94235 1.03484 1.01322 1.21566 0.95540 0.81490 1.02931 1.48292 1.61665 1.14532 1.07421 1.19321 0.95183 0.93104 0.79439 1.21422 0.93092 1.36900 1.06068 0.94308 1.25447 1.01701 0.94343 0.95300 1.70000 1.36756 1.37167 1.11157 0.85727 0.80818 0.78267 0.77873 1.19943 1.19649 1.20586 1.16894 0.77301 0.83819 0.83970 1.90708 1.55605 1.68252 1.31652 1.21985 1.12501 0.94125 0.86701 1.21659 1.00869 0.92482 0.98519 1.20307 1.10173 0.97541 0.93478 1.20309 1.00413 0.90716 0.80374 1.86457 1.91533 1.43057 1.18877 1.23401 1.00353 0.85709 0.94943 1.20575 1.02440 0.92595 0.97411 1.84687 1.63321 1.20729 1.33743 0.93888 0.92741 0.88665 0.89499 0.91111 0.95455 0.94424 0.92293 0.83139 0.90427 0.89935 0.74667 0.88796 0.90995 0.85704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.91 10.21 71.98 0.73 -4.18 16 2 C 0.11 4.13 6.08 86.38 0.53 4.65 16 3 N -0.59 -27.68 2.49 -830.91 -2.07 -29.74 16 4 C 0.25 12.82 4.74 85.63 0.41 13.23 16 5 C -0.54 -29.43 8.39 25.60 0.21 -29.22 16 6 H 0.04 2.23 7.81 -2.91 -0.02 2.21 16 7 C 0.03 1.76 5.46 84.66 0.46 2.22 16 8 N -0.91 -49.94 13.29 21.45 0.28 -49.65 16 9 Si 0.95 42.59 29.54 68.60 2.03 44.61 16 10 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 11 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 12 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 13 C 0.59 28.84 7.54 86.44 0.65 29.49 16 14 O -0.58 -29.19 16.51 -4.32 -0.07 -29.26 16 15 C -0.10 -4.71 6.74 24.08 0.16 -4.55 16 16 C -0.11 -4.69 9.98 22.39 0.22 -4.47 16 17 C -0.21 -7.23 6.10 -20.06 -0.12 -7.36 16 18 C 0.16 3.54 7.08 71.24 0.50 4.05 16 19 O -0.59 -13.64 13.08 -148.98 -1.95 -15.59 16 20 C 0.01 0.35 7.31 24.97 0.18 0.53 16 21 C -0.07 -1.93 10.21 71.24 0.73 -1.20 16 22 O -0.13 -6.05 6.59 -5.01 -0.03 -6.08 16 23 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 24 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 25 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 26 H 0.09 3.21 8.03 -2.39 -0.02 3.19 16 27 H 0.07 2.74 7.52 -2.39 -0.02 2.72 16 28 H 0.03 1.44 8.02 -2.38 -0.02 1.42 16 29 H 0.04 2.07 5.43 -2.39 -0.01 2.06 16 30 H 0.27 13.78 8.31 -92.71 -0.77 13.01 16 31 H 0.15 6.11 7.98 -2.91 -0.02 6.09 16 32 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 33 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.40 4.38 9.12 -74.06 -0.68 3.71 16 35 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 36 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.12 2.09 7.86 -2.38 -0.02 2.07 16 Total: -1.00 -71.05 319.72 3.27 -67.78 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: 0.41 Total: 14.73 kcal Atomic # 6 Polarization: -1.47 SS G_CDS: 4.67 Total: 3.20 kcal Atomic # 7 Polarization: -77.61 SS G_CDS: -1.78 Total: -79.39 kcal Atomic # 8 Polarization: -48.88 SS G_CDS: -2.05 Total: -50.93 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.61 kcal Total: -71.05 3.27 -67.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601009100.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.785 kcal (2) G-P(sol) polarization free energy of solvation -71.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds