Wall clock time and date at job start Mon Mar 30 2020 00:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34896 * 116.99947 * 2 1 4 4 O 1.21625 * 120.00142 * 359.97438 * 3 2 1 5 5 C 1.46472 * 120.00380 * 179.97438 * 3 2 1 6 6 C 1.36643 * 125.99941 * 179.97438 * 5 3 2 7 7 C 1.40309 * 106.70162 * 179.73089 * 6 5 3 8 8 C 1.35176 * 107.12809 * 0.40827 * 7 6 5 9 9 C 1.50692 * 125.60972 * 179.85189 * 8 7 6 10 10 H 1.09002 * 109.47245 * 339.71598 * 9 8 7 11 11 C 1.52999 * 109.47360 * 99.71894 * 9 8 7 12 12 N 1.46906 * 109.46854 * 219.71989 * 9 8 7 13 13 C 1.46905 * 110.99707 * 152.35712 * 12 9 8 14 14 H 1.09000 * 109.46950 * 343.57532 * 13 12 9 15 15 C 1.52992 * 109.47432 * 103.57698 * 13 12 9 16 16 C 1.50700 * 109.46752 * 223.58079 * 13 12 9 17 17 H 1.08002 * 119.99998 * 354.85207 * 16 13 12 18 18 C 1.37876 * 120.00183 * 174.86063 * 16 13 12 19 19 N 1.31513 * 120.00175 * 162.59712 * 18 16 13 20 20 Si 1.86796 * 119.99668 * 342.59352 * 18 16 13 21 21 H 1.48504 * 109.47033 * 180.02562 * 20 18 16 22 22 H 1.48497 * 109.47252 * 300.00181 * 20 18 16 23 23 H 1.48496 * 109.47452 * 60.00453 * 20 18 16 24 24 O 1.33912 * 108.77649 * 359.58741 * 8 7 6 25 25 H 1.08998 * 109.47343 * 300.00045 * 1 2 3 26 26 H 1.09004 * 109.46791 * 60.00383 * 1 2 3 27 27 H 1.09002 * 109.46992 * 179.97438 * 1 2 3 28 28 H 1.07997 * 126.64496 * 0.02562 * 6 5 3 29 29 H 1.07997 * 126.44006 * 180.30020 * 7 6 5 30 30 H 1.09004 * 109.47279 * 186.78900 * 11 9 8 31 31 H 1.09003 * 109.46833 * 306.78312 * 11 9 8 32 32 H 1.08996 * 109.46900 * 66.78773 * 11 9 8 33 33 H 1.00901 * 110.99816 * 276.30328 * 12 9 8 34 34 H 1.08997 * 109.47059 * 172.50476 * 15 13 12 35 35 H 1.08993 * 109.47281 * 292.50972 * 15 13 12 36 36 H 1.09003 * 109.46903 * 52.51121 * 15 13 12 37 37 H 0.97003 * 120.00331 * 354.90406 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0644 1.2019 0.0000 4 8 1.4020 2.2220 -0.0005 5 6 3.5271 1.2787 0.0006 6 6 4.2712 2.4247 0.0001 7 6 5.6179 2.0311 0.0073 8 6 5.6377 0.6795 0.0025 9 6 6.8755 -0.1799 0.0041 10 1 7.7250 0.4059 -0.3469 11 6 7.1502 -0.6760 1.4251 12 7 6.6734 -1.3311 -0.8859 13 6 7.9523 -1.8062 -1.4307 14 1 8.7137 -1.0387 -1.2922 15 6 8.3754 -3.0821 -0.7000 16 6 7.7947 -2.0979 -2.9007 17 1 6.8219 -2.0257 -3.3644 18 6 8.8923 -2.4572 -3.6538 19 7 8.7266 -3.0359 -4.8231 20 14 10.6147 -2.1219 -3.0133 21 1 11.6128 -2.5988 -4.0040 22 1 10.7881 -0.6626 -2.7999 23 1 10.8125 -2.8372 -1.7271 24 8 4.3762 0.2300 0.0020 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 3.8955 3.4373 -0.0003 29 1 6.4774 2.6851 0.0135 30 1 8.1079 -1.1959 1.4497 31 1 7.1805 0.1738 2.1070 32 1 6.3579 -1.3592 1.7309 33 1 6.1845 -2.0746 -0.4101 34 1 9.2511 -3.5078 -1.1898 35 1 8.6180 -2.8442 0.3356 36 1 7.5584 -3.8032 -0.7254 37 1 7.8363 -3.2770 -5.1232 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602860342.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:26 Heat of formation + Delta-G solvation = -66.044624 kcal Electronic energy + Delta-G solvation = -20214.900381 eV Core-core repulsion = 16959.499697 eV Total energy + Delta-G solvation = -3255.400684 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.63443 -40.23267 -37.11441 -36.61547 -33.50544 -32.93963 -31.35217 -29.60930 -27.70077 -27.53842 -24.69000 -24.20524 -22.05580 -21.36421 -20.17776 -20.05366 -18.44180 -17.53472 -17.09467 -16.78418 -15.91480 -15.52700 -14.80208 -14.29889 -13.98531 -13.73308 -13.37554 -13.35234 -13.13197 -12.90670 -12.81905 -12.41647 -12.33131 -12.01092 -11.89486 -11.32768 -11.23201 -11.12341 -10.98371 -10.93261 -10.45560 -10.05632 -9.98195 -9.72168 -8.97923 -8.50861 -8.29770 -7.63978 -6.39578 -4.00495 0.87926 2.28558 2.34658 2.89028 3.04858 3.33794 3.39577 3.57182 4.46907 4.49783 4.76970 4.90885 4.92439 5.00743 5.04978 5.20743 5.26111 5.33382 5.33581 5.57689 5.66287 5.77123 5.88203 5.95019 6.06953 6.12476 6.28241 6.32341 6.39566 6.49226 6.70228 6.99254 7.10327 7.57271 7.69447 8.13287 8.23191 8.47697 9.05076 9.66305 10.97046 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.025252 B = 0.004454 C = 0.004220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.567857 B = 6285.008724 C = 6632.774927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.346 6.346 3 C 0.558 3.442 4 O -0.498 6.498 5 C -0.091 4.091 6 C -0.094 4.094 7 C -0.240 4.240 8 C 0.086 3.914 9 C 0.149 3.851 10 H 0.112 0.888 11 C -0.180 4.180 12 N -0.666 5.666 13 C 0.189 3.811 14 H 0.022 0.978 15 C -0.179 4.179 16 C -0.580 4.580 17 H 0.064 0.936 18 C 0.028 3.972 19 N -0.908 5.908 20 Si 1.038 2.962 21 H -0.285 1.285 22 H -0.284 1.284 23 H -0.276 1.276 24 O -0.135 6.135 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.104 0.896 28 H 0.160 0.840 29 H 0.159 0.841 30 H 0.071 0.929 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.336 0.664 34 H 0.062 0.938 35 H 0.023 0.977 36 H 0.048 0.952 37 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.716 7.174 13.796 17.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.262 6.262 3 C 0.404 3.596 4 O -0.388 6.388 5 C -0.141 4.141 6 C -0.114 4.114 7 C -0.260 4.260 8 C 0.031 3.969 9 C 0.038 3.962 10 H 0.129 0.871 11 C -0.239 4.239 12 N -0.296 5.296 13 C 0.081 3.919 14 H 0.040 0.960 15 C -0.238 4.238 16 C -0.619 4.619 17 H 0.082 0.918 18 C -0.177 4.177 19 N -0.542 5.542 20 Si 0.867 3.133 21 H -0.211 1.211 22 H -0.211 1.211 23 H -0.203 1.203 24 O -0.029 6.029 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.123 0.877 28 H 0.178 0.822 29 H 0.176 0.824 30 H 0.090 0.910 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.154 0.846 34 H 0.081 0.919 35 H 0.042 0.958 36 H 0.067 0.933 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.604 7.400 12.809 16.633 hybrid contribution -1.463 -0.095 1.097 1.831 sum -9.067 7.306 13.906 18.137 Atomic orbital electron populations 1.23332 0.75681 1.04047 1.02635 1.86705 1.23712 1.31852 1.83969 1.19214 0.85652 0.81952 0.72807 1.90915 1.64603 1.35937 1.47371 1.20530 0.87804 0.86604 1.19170 1.21880 0.92430 0.98444 0.98668 1.21547 0.97547 0.94307 1.12583 1.23389 0.83681 0.93822 0.95987 1.20482 0.89347 0.93597 0.92807 0.87057 1.22633 1.02835 1.01837 0.96628 1.60736 1.24224 1.09064 1.35535 1.19638 0.85295 0.91026 0.95952 0.96001 1.22909 1.02095 1.01238 0.97563 1.22019 0.97379 1.50136 0.92354 0.91750 1.25672 1.03648 0.93412 0.94920 1.70818 1.25962 1.36181 1.21254 0.84175 0.76499 0.76810 0.75859 1.21091 1.21098 1.20258 1.84142 1.15335 1.34121 1.69296 0.91739 0.91613 0.87743 0.82189 0.82361 0.91010 0.92078 0.92005 0.84596 0.91906 0.95848 0.93301 0.92142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 10.57 101.05 1.07 1.41 16 2 O -0.35 -4.85 10.58 -42.47 -0.45 -5.30 16 3 C 0.56 8.50 7.93 34.05 0.27 8.77 16 4 O -0.50 -7.95 16.66 -19.36 -0.32 -8.27 16 5 C -0.09 -1.44 7.18 -36.84 -0.26 -1.70 16 6 C -0.09 -1.31 10.62 -39.38 -0.42 -1.73 16 7 C -0.24 -3.32 10.76 -39.89 -0.43 -3.75 16 8 C 0.09 1.37 6.15 -35.40 -0.22 1.15 16 9 C 0.15 2.37 3.02 -68.87 -0.21 2.16 16 10 H 0.11 1.74 7.28 -51.93 -0.38 1.36 16 11 C -0.18 -2.31 9.22 37.16 0.34 -1.97 16 12 N -0.67 -13.15 6.08 -102.17 -0.62 -13.77 16 13 C 0.19 4.23 2.26 -68.87 -0.16 4.07 16 14 H 0.02 0.49 5.82 -51.93 -0.30 0.19 16 15 C -0.18 -3.64 8.82 37.15 0.33 -3.31 16 16 C -0.58 -16.06 9.11 -34.44 -0.31 -16.38 16 17 H 0.06 2.00 8.06 -52.49 -0.42 1.57 16 18 C 0.03 0.80 5.28 -17.82 -0.09 0.70 16 19 N -0.91 -27.71 13.70 55.43 0.76 -26.95 16 20 Si 1.04 24.25 26.27 -169.99 -4.47 19.79 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 23 H -0.28 -5.85 5.75 56.52 0.32 -5.53 16 24 O -0.14 -2.31 10.66 4.75 0.05 -2.26 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.16 1.85 8.06 -52.49 -0.42 1.43 16 29 H 0.16 1.76 8.06 -52.49 -0.42 1.34 16 30 H 0.07 0.91 6.84 -51.93 -0.36 0.55 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.78 7.99 -51.93 -0.42 0.37 16 33 H 0.34 6.27 7.72 -39.29 -0.30 5.97 16 34 H 0.06 1.36 4.82 -51.93 -0.25 1.11 16 35 H 0.02 0.39 6.83 -51.93 -0.35 0.04 16 36 H 0.05 0.98 7.98 -51.93 -0.41 0.56 16 37 H 0.27 8.23 8.73 -40.82 -0.36 7.88 16 LS Contribution 315.57 15.07 4.76 4.76 Total: -1.00 -31.91 315.57 -5.35 -37.26 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -4.96 Total: 5.33 kcal Atomic # 6 Polarization: -10.48 SS G_CDS: -0.09 Total: -10.58 kcal Atomic # 7 Polarization: -40.86 SS G_CDS: 0.14 Total: -40.72 kcal Atomic # 8 Polarization: -15.11 SS G_CDS: -0.72 Total: -15.83 kcal Atomic # 14 Polarization: 24.25 SS G_CDS: -4.47 Total: 19.79 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.91 -5.35 -37.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602860342.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.786 kcal (2) G-P(sol) polarization free energy of solvation -31.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds