Wall clock time and date at job start Mon Mar 30 2020 00:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34896 * 116.99947 * 2 1 4 4 O 1.21625 * 120.00142 * 359.97438 * 3 2 1 5 5 C 1.46472 * 120.00380 * 179.97438 * 3 2 1 6 6 C 1.36643 * 125.99941 * 179.97438 * 5 3 2 7 7 C 1.40309 * 106.70162 * 179.73089 * 6 5 3 8 8 C 1.35176 * 107.12809 * 0.40827 * 7 6 5 9 9 C 1.50692 * 125.60972 * 179.85189 * 8 7 6 10 10 H 1.09002 * 109.47245 * 339.71598 * 9 8 7 11 11 C 1.52999 * 109.47360 * 99.71894 * 9 8 7 12 12 N 1.46906 * 109.46854 * 219.71989 * 9 8 7 13 13 C 1.46905 * 110.99707 * 152.35712 * 12 9 8 14 14 H 1.09000 * 109.46950 * 343.57532 * 13 12 9 15 15 C 1.52992 * 109.47432 * 103.57698 * 13 12 9 16 16 C 1.50700 * 109.46752 * 223.58079 * 13 12 9 17 17 H 1.08002 * 119.99998 * 354.85207 * 16 13 12 18 18 C 1.37876 * 120.00183 * 174.86063 * 16 13 12 19 19 N 1.31513 * 120.00175 * 162.59712 * 18 16 13 20 20 Si 1.86796 * 119.99668 * 342.59352 * 18 16 13 21 21 H 1.48504 * 109.47033 * 180.02562 * 20 18 16 22 22 H 1.48497 * 109.47252 * 300.00181 * 20 18 16 23 23 H 1.48496 * 109.47452 * 60.00453 * 20 18 16 24 24 O 1.33912 * 108.77649 * 359.58741 * 8 7 6 25 25 H 1.08998 * 109.47343 * 300.00045 * 1 2 3 26 26 H 1.09004 * 109.46791 * 60.00383 * 1 2 3 27 27 H 1.09002 * 109.46992 * 179.97438 * 1 2 3 28 28 H 1.07997 * 126.64496 * 0.02562 * 6 5 3 29 29 H 1.07997 * 126.44006 * 180.30020 * 7 6 5 30 30 H 1.09004 * 109.47279 * 186.78900 * 11 9 8 31 31 H 1.09003 * 109.46833 * 306.78312 * 11 9 8 32 32 H 1.08996 * 109.46900 * 66.78773 * 11 9 8 33 33 H 1.00901 * 110.99816 * 276.30328 * 12 9 8 34 34 H 1.08997 * 109.47059 * 172.50476 * 15 13 12 35 35 H 1.08993 * 109.47281 * 292.50972 * 15 13 12 36 36 H 1.09003 * 109.46903 * 52.51121 * 15 13 12 37 37 H 0.97003 * 120.00331 * 354.90406 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0644 1.2019 0.0000 4 8 1.4020 2.2220 -0.0005 5 6 3.5271 1.2787 0.0006 6 6 4.2712 2.4247 0.0001 7 6 5.6179 2.0311 0.0073 8 6 5.6377 0.6795 0.0025 9 6 6.8755 -0.1799 0.0041 10 1 7.7250 0.4059 -0.3469 11 6 7.1502 -0.6760 1.4251 12 7 6.6734 -1.3311 -0.8859 13 6 7.9523 -1.8062 -1.4307 14 1 8.7137 -1.0387 -1.2922 15 6 8.3754 -3.0821 -0.7000 16 6 7.7947 -2.0979 -2.9007 17 1 6.8219 -2.0257 -3.3644 18 6 8.8923 -2.4572 -3.6538 19 7 8.7266 -3.0359 -4.8231 20 14 10.6147 -2.1219 -3.0133 21 1 11.6128 -2.5988 -4.0040 22 1 10.7881 -0.6626 -2.7999 23 1 10.8125 -2.8372 -1.7271 24 8 4.3762 0.2300 0.0020 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 3.8955 3.4373 -0.0003 29 1 6.4774 2.6851 0.0135 30 1 8.1079 -1.1959 1.4497 31 1 7.1805 0.1738 2.1070 32 1 6.3579 -1.3592 1.7309 33 1 6.1845 -2.0746 -0.4101 34 1 9.2511 -3.5078 -1.1898 35 1 8.6180 -2.8442 0.3356 36 1 7.5584 -3.8032 -0.7254 37 1 7.8363 -3.2770 -5.1232 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602860342.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:26 Heat of formation + Delta-G solvation = -88.456550 kcal Electronic energy + Delta-G solvation = -20215.872236 eV Core-core repulsion = 16959.499697 eV Total energy + Delta-G solvation = -3256.372538 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.79299 -41.33649 -38.59585 -37.71622 -35.24074 -34.18506 -33.06129 -30.78797 -29.04073 -28.48555 -26.68782 -25.31172 -23.21845 -22.54630 -21.87815 -21.29814 -19.68688 -19.41581 -18.22503 -17.90407 -17.16731 -16.71349 -16.41401 -15.56681 -15.42643 -15.04338 -14.81944 -14.38692 -14.32302 -14.18644 -13.98721 -13.79422 -13.71175 -13.29818 -13.15675 -12.97220 -12.64299 -12.47607 -12.17080 -12.04083 -11.94934 -11.76312 -11.47351 -11.09485 -11.03095 -10.41673 -9.67562 -9.23375 -8.59726 -6.26281 -0.27926 1.18486 1.27154 1.49519 1.57916 1.75595 1.76016 1.96957 2.56792 3.11298 3.23736 3.60746 3.85028 3.87091 4.12895 4.20475 4.20662 4.27709 4.48128 4.54597 4.58686 4.63911 4.65166 4.75191 4.77541 4.91550 4.93807 5.05446 5.07062 5.20447 5.30346 5.49658 5.82158 5.91806 6.12801 6.39812 6.47179 6.63205 6.79508 7.52343 8.70519 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.025252 B = 0.004454 C = 0.004220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.567857 B = 6285.008724 C = 6632.774927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.362 6.362 3 C 0.557 3.443 4 O -0.512 6.512 5 C -0.116 4.116 6 C -0.087 4.087 7 C -0.229 4.229 8 C 0.063 3.937 9 C 0.149 3.851 10 H 0.117 0.883 11 C -0.172 4.172 12 N -0.688 5.688 13 C 0.193 3.807 14 H 0.036 0.964 15 C -0.173 4.173 16 C -0.585 4.585 17 H 0.010 0.990 18 C -0.027 4.027 19 N -0.946 5.946 20 Si 1.081 2.919 21 H -0.296 1.296 22 H -0.262 1.262 23 H -0.235 1.235 24 O -0.157 6.157 25 H 0.074 0.926 26 H 0.067 0.933 27 H 0.132 0.868 28 H 0.183 0.817 29 H 0.189 0.811 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.059 0.941 33 H 0.339 0.661 34 H 0.050 0.950 35 H 0.065 0.935 36 H 0.041 0.959 37 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.495 8.395 16.462 19.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.278 6.278 3 C 0.404 3.596 4 O -0.404 6.404 5 C -0.165 4.165 6 C -0.107 4.107 7 C -0.248 4.248 8 C 0.009 3.991 9 C 0.039 3.961 10 H 0.135 0.865 11 C -0.230 4.230 12 N -0.319 5.319 13 C 0.084 3.916 14 H 0.054 0.946 15 C -0.231 4.231 16 C -0.623 4.623 17 H 0.029 0.971 18 C -0.223 4.223 19 N -0.582 5.582 20 Si 0.902 3.098 21 H -0.222 1.222 22 H -0.187 1.187 23 H -0.159 1.159 24 O -0.052 6.052 25 H 0.093 0.907 26 H 0.086 0.914 27 H 0.150 0.850 28 H 0.201 0.799 29 H 0.206 0.794 30 H 0.097 0.903 31 H 0.102 0.898 32 H 0.078 0.922 33 H 0.157 0.843 34 H 0.069 0.931 35 H 0.083 0.917 36 H 0.060 0.940 37 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -6.424 8.627 15.512 18.876 hybrid contribution -2.034 -0.445 0.242 2.096 sum -8.458 8.181 15.753 19.663 Atomic orbital electron populations 1.23695 0.73352 1.06150 1.03277 1.86689 1.26134 1.31375 1.83589 1.19243 0.85683 0.82139 0.72525 1.90891 1.64872 1.36287 1.48310 1.20895 0.88217 0.87084 1.20347 1.22249 0.92371 0.98980 0.97073 1.21926 0.98407 0.93775 1.10725 1.23590 0.83399 0.94772 0.97355 1.20570 0.89643 0.91986 0.93934 0.86522 1.22537 1.02987 1.02704 0.94780 1.60457 1.23273 1.10275 1.37866 1.19425 0.86855 0.92544 0.92750 0.94604 1.22749 1.01231 0.99595 0.99550 1.22269 0.94923 1.49270 0.95838 0.97127 1.27263 1.08293 0.92442 0.94321 1.70967 1.24602 1.39335 1.23329 0.83673 0.70842 0.78434 0.76871 1.22221 1.18660 1.15895 1.84103 1.16026 1.35078 1.70038 0.90709 0.91387 0.84995 0.79945 0.79394 0.90285 0.89758 0.92194 0.84252 0.93140 0.91652 0.93961 0.94293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.57 113.37 1.20 1.70 16 2 O -0.36 -10.08 10.58 -56.72 -0.60 -10.68 16 3 C 0.56 16.87 7.93 69.97 0.55 17.43 16 4 O -0.51 -16.09 16.66 19.43 0.32 -15.76 16 5 C -0.12 -3.59 7.18 24.04 0.17 -3.42 16 6 C -0.09 -2.26 10.62 22.40 0.24 -2.03 16 7 C -0.23 -5.75 10.76 22.07 0.24 -5.51 16 8 C 0.06 1.90 6.15 24.98 0.15 2.06 16 9 C 0.15 4.39 3.02 44.17 0.13 4.52 16 10 H 0.12 3.27 7.28 -2.39 -0.02 3.26 16 11 C -0.17 -3.79 9.22 71.98 0.66 -3.13 16 12 N -0.69 -26.58 6.08 -477.16 -2.90 -29.48 16 13 C 0.19 8.34 2.26 44.17 0.10 8.44 16 14 H 0.04 1.47 5.82 -2.39 -0.01 1.46 16 15 C -0.17 -6.54 8.82 71.98 0.63 -5.90 16 16 C -0.58 -33.06 9.11 25.60 0.23 -32.82 16 17 H 0.01 0.68 8.06 -2.91 -0.02 0.66 16 18 C -0.03 -1.52 5.28 84.65 0.45 -1.07 16 19 N -0.95 -59.90 13.70 21.45 0.29 -59.61 16 20 Si 1.08 47.47 26.27 68.60 1.80 49.28 16 21 H -0.30 -13.47 7.11 99.48 0.71 -12.76 16 22 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 23 H -0.23 -8.76 5.75 99.48 0.57 -8.19 16 24 O -0.16 -5.32 10.66 -4.87 -0.05 -5.37 16 25 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 27 H 0.13 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.18 3.78 8.06 -2.91 -0.02 3.75 16 29 H 0.19 3.44 8.06 -2.91 -0.02 3.42 16 30 H 0.08 1.64 6.84 -2.39 -0.02 1.62 16 31 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.06 1.35 7.99 -2.39 -0.02 1.33 16 33 H 0.34 12.46 7.72 -89.69 -0.69 11.77 16 34 H 0.05 2.03 4.82 -2.39 -0.01 2.02 16 35 H 0.06 1.93 6.83 -2.39 -0.02 1.92 16 36 H 0.04 1.62 7.98 -2.39 -0.02 1.60 16 37 H 0.25 16.19 8.73 -92.71 -0.81 15.38 16 Total: -1.00 -72.41 315.57 3.86 -68.56 By element: Atomic # 1 Polarization: 22.60 SS G_CDS: 0.22 Total: 22.82 kcal Atomic # 6 Polarization: -24.51 SS G_CDS: 4.77 Total: -19.74 kcal Atomic # 7 Polarization: -86.48 SS G_CDS: -2.61 Total: -89.09 kcal Atomic # 8 Polarization: -31.49 SS G_CDS: -0.33 Total: -31.82 kcal Atomic # 14 Polarization: 47.47 SS G_CDS: 1.80 Total: 49.28 kcal Total: -72.41 3.86 -68.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602860342.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.898 kcal (2) G-P(sol) polarization free energy of solvation -72.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds