Wall clock time and date at job start Mon Mar 30 2020 00:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34900 * 117.00127 * 2 1 4 4 O 1.21620 * 119.99551 * 359.97438 * 3 2 1 5 5 C 1.46461 * 119.99871 * 180.02562 * 3 2 1 6 6 C 1.36648 * 125.99563 * 179.97438 * 5 3 2 7 7 C 1.40308 * 106.70306 * 180.02562 * 6 5 3 8 8 C 1.35176 * 107.12681 * 359.97438 * 7 6 5 9 9 C 1.50701 * 125.60915 * 180.26989 * 8 7 6 10 10 H 1.09003 * 109.46673 * 339.71271 * 9 8 7 11 11 C 1.52998 * 109.47333 * 99.71477 * 9 8 7 12 12 N 1.46896 * 109.47114 * 219.71636 * 9 8 7 13 13 C 1.46895 * 111.00030 * 154.99631 * 12 9 8 14 14 H 1.08994 * 109.47374 * 35.00305 * 13 12 9 15 15 C 1.52999 * 109.47421 * 274.99784 * 13 12 9 16 16 C 1.50710 * 109.47139 * 155.00238 * 13 12 9 17 17 H 1.07997 * 119.99430 * 359.97438 * 16 13 12 18 18 C 1.37873 * 120.00114 * 180.02562 * 16 13 12 19 19 N 1.31516 * 119.99926 * 359.97438 * 18 16 13 20 20 Si 1.86800 * 119.99925 * 179.97438 * 18 16 13 21 21 H 1.48496 * 109.47289 * 59.99459 * 20 18 16 22 22 H 1.48507 * 109.47026 * 179.97438 * 20 18 16 23 23 H 1.48506 * 109.46930 * 299.99198 * 20 18 16 24 24 O 1.33914 * 108.78037 * 0.02562 * 8 7 6 25 25 H 1.09002 * 109.47070 * 300.00493 * 1 2 3 26 26 H 1.09006 * 109.47167 * 60.00139 * 1 2 3 27 27 H 1.09000 * 109.47414 * 180.02562 * 1 2 3 28 28 H 1.07995 * 126.64505 * 0.05062 * 6 5 3 29 29 H 1.08000 * 126.43855 * 180.02562 * 7 6 5 30 30 H 1.08998 * 109.47039 * 179.97438 * 11 9 8 31 31 H 1.09002 * 109.47140 * 300.00332 * 11 9 8 32 32 H 1.08997 * 109.46790 * 59.99941 * 11 9 8 33 33 H 1.00907 * 110.99848 * 31.04702 * 12 9 8 34 34 H 1.09001 * 109.46910 * 60.00156 * 15 13 12 35 35 H 1.09003 * 109.47573 * 179.97438 * 15 13 12 36 36 H 1.09001 * 109.47590 * 300.00381 * 15 13 12 37 37 H 0.97002 * 119.99976 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0645 1.2020 0.0000 4 8 1.4020 2.2219 -0.0005 5 6 3.5271 1.2785 -0.0006 6 6 4.2713 2.4246 -0.0011 7 6 5.6180 2.0309 -0.0021 8 6 5.6376 0.6793 -0.0016 9 6 6.8754 -0.1803 0.0035 10 1 7.7250 0.4041 -0.3498 11 6 7.1501 -0.6706 1.4265 12 7 6.6734 -1.3349 -0.8818 13 6 7.9571 -1.8512 -1.3750 14 1 8.7140 -1.7455 -0.5979 15 6 8.3834 -1.0598 -2.6131 16 6 7.8079 -3.3067 -1.7362 17 1 6.8548 -3.7990 -1.6113 18 6 8.8884 -4.0100 -2.2249 19 7 10.0491 -3.4106 -2.3765 20 14 8.7035 -5.8144 -2.6719 21 1 7.6725 -5.9589 -3.7308 22 1 10.0013 -6.3362 -3.1706 23 1 8.2898 -6.5821 -1.4699 24 8 4.3762 0.2298 -0.0008 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 3.8956 3.4371 -0.0005 29 1 6.4775 2.6849 -0.0024 30 1 8.0451 -1.2927 1.4300 31 1 7.3000 0.1862 2.0835 32 1 6.3005 -1.2550 1.7797 33 1 6.0598 -1.1003 -1.6478 34 1 8.4914 -0.0070 -2.3520 35 1 9.3362 -1.4425 -2.9788 36 1 7.6265 -1.1655 -3.3904 37 1 10.8092 -3.9053 -2.7207 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602860346.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:29 Heat of formation + Delta-G solvation = -68.411835 kcal Electronic energy + Delta-G solvation = -20145.787832 eV Core-core repulsion = 16890.284498 eV Total energy + Delta-G solvation = -3255.503334 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.72319 -40.26923 -36.79622 -36.63070 -33.48187 -32.97843 -31.04869 -29.48929 -27.60783 -27.12853 -25.19590 -24.12849 -22.12223 -21.31414 -20.36654 -19.72941 -18.46472 -17.21770 -16.82514 -16.65693 -15.77737 -15.47445 -14.94934 -14.36661 -14.05704 -13.47128 -13.42929 -13.17173 -13.02565 -12.92799 -12.60574 -12.34331 -11.99144 -11.65816 -11.45916 -11.28780 -11.00336 -11.00126 -10.90545 -10.74031 -10.53350 -10.16347 -10.06256 -9.90580 -9.08177 -8.57998 -8.38540 -7.41607 -6.01601 -4.04672 0.80782 2.24674 2.25261 2.82681 2.98250 3.34242 3.37938 3.41779 4.39675 4.52562 4.77611 4.83801 4.91590 4.99588 5.13631 5.30371 5.32144 5.49971 5.54163 5.67800 5.73641 5.80675 6.06082 6.13437 6.22851 6.33463 6.60430 6.64525 6.76803 6.89375 7.00803 7.25690 7.53481 7.67874 7.83375 8.18837 8.39705 8.51846 9.02079 9.60682 11.05552 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.023559 B = 0.004348 C = 0.003896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.196687 B = 6438.129695 C = 7184.994883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.345 6.345 3 C 0.557 3.443 4 O -0.497 6.497 5 C -0.087 4.087 6 C -0.097 4.097 7 C -0.236 4.236 8 C 0.064 3.936 9 C 0.154 3.846 10 H 0.074 0.926 11 C -0.137 4.137 12 N -0.675 5.675 13 C 0.210 3.790 14 H 0.039 0.961 15 C -0.171 4.171 16 C -0.495 4.495 17 H 0.063 0.937 18 C 0.056 3.944 19 N -0.898 5.898 20 Si 0.899 3.101 21 H -0.278 1.278 22 H -0.289 1.289 23 H -0.277 1.277 24 O -0.130 6.130 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.105 0.895 28 H 0.161 0.839 29 H 0.159 0.841 30 H 0.074 0.926 31 H 0.050 0.950 32 H 0.063 0.937 33 H 0.332 0.668 34 H 0.005 0.995 35 H 0.091 0.909 36 H 0.029 0.971 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.601 9.827 5.322 16.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.260 6.260 3 C 0.403 3.597 4 O -0.387 6.387 5 C -0.138 4.138 6 C -0.117 4.117 7 C -0.256 4.256 8 C 0.009 3.991 9 C 0.043 3.957 10 H 0.091 0.909 11 C -0.195 4.195 12 N -0.306 5.306 13 C 0.103 3.897 14 H 0.057 0.943 15 C -0.231 4.231 16 C -0.534 4.534 17 H 0.081 0.919 18 C -0.144 4.144 19 N -0.538 5.538 20 Si 0.727 3.273 21 H -0.204 1.204 22 H -0.215 1.215 23 H -0.202 1.202 24 O -0.024 6.024 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.123 0.877 28 H 0.179 0.821 29 H 0.177 0.823 30 H 0.093 0.907 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.149 0.851 34 H 0.024 0.976 35 H 0.110 0.890 36 H 0.048 0.952 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -11.797 9.282 5.787 16.087 hybrid contribution 0.079 0.019 -1.009 1.012 sum -11.717 9.300 4.778 15.704 Atomic orbital electron populations 1.23345 0.75597 1.04136 1.02618 1.86721 1.23763 1.31704 1.83854 1.19200 0.85609 0.82013 0.72853 1.90918 1.64566 1.35966 1.47282 1.20597 0.87930 0.86592 1.18650 1.21906 0.92390 0.98518 0.98875 1.21620 0.97598 0.94356 1.11997 1.23563 0.84141 0.93938 0.97427 1.20382 0.87455 0.90580 0.97234 0.90859 1.21825 1.03426 1.00741 0.93473 1.61009 1.17790 1.28574 1.23239 1.19277 0.84515 0.94011 0.91883 0.94322 1.22470 1.04270 0.95709 1.00627 1.21076 0.96724 0.94032 1.41564 0.91856 1.24931 0.95229 0.98454 0.95807 1.69864 1.00917 1.36290 1.46701 0.86549 0.77015 0.84946 0.78804 1.20369 1.21472 1.20246 1.84206 1.15168 1.33906 1.69125 0.91700 0.91639 0.87657 0.82098 0.82292 0.90722 0.93062 0.91769 0.85092 0.97616 0.89013 0.95207 0.92967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 10.57 101.05 1.07 1.40 16 2 O -0.34 -4.70 10.58 -42.49 -0.45 -5.15 16 3 C 0.56 8.16 7.93 34.04 0.27 8.43 16 4 O -0.50 -7.63 16.66 -19.36 -0.32 -7.95 16 5 C -0.09 -1.32 7.18 -36.85 -0.26 -1.58 16 6 C -0.10 -1.27 10.62 -39.38 -0.42 -1.69 16 7 C -0.24 -3.12 10.76 -39.89 -0.43 -3.55 16 8 C 0.06 1.00 5.81 -35.40 -0.21 0.79 16 9 C 0.15 2.60 2.88 -68.87 -0.20 2.40 16 10 H 0.07 1.21 7.10 -51.93 -0.37 0.84 16 11 C -0.14 -2.16 9.38 37.16 0.35 -1.81 16 12 N -0.67 -13.87 6.02 -102.17 -0.62 -14.49 16 13 C 0.21 5.04 2.38 -68.86 -0.16 4.88 16 14 H 0.04 1.00 7.11 -51.93 -0.37 0.63 16 15 C -0.17 -3.96 8.92 37.16 0.33 -3.63 16 16 C -0.50 -13.36 8.84 -34.44 -0.30 -13.67 16 17 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 18 C 0.06 1.53 5.30 -17.82 -0.09 1.44 16 19 N -0.90 -25.02 11.32 55.43 0.63 -24.40 16 20 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 O -0.13 -2.18 10.66 4.74 0.05 -2.13 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.16 1.74 8.06 -52.49 -0.42 1.32 16 29 H 0.16 1.70 8.06 -52.49 -0.42 1.27 16 30 H 0.07 1.27 7.43 -51.93 -0.39 0.88 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 33 H 0.33 6.76 8.09 -39.29 -0.32 6.44 16 34 H 0.00 0.10 7.43 -51.93 -0.39 -0.28 16 35 H 0.09 2.36 6.07 -51.93 -0.32 2.05 16 36 H 0.03 0.67 8.13 -51.93 -0.42 0.25 16 37 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 320.98 15.07 4.84 4.84 Total: -1.00 -29.51 320.98 -6.02 -35.53 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -5.07 Total: 4.14 kcal Atomic # 6 Polarization: -6.54 SS G_CDS: -0.06 Total: -6.60 kcal Atomic # 7 Polarization: -38.90 SS G_CDS: 0.01 Total: -38.88 kcal Atomic # 8 Polarization: -14.51 SS G_CDS: -0.72 Total: -15.23 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -29.51 -6.02 -35.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602860346.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.877 kcal (2) G-P(sol) polarization free energy of solvation -29.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds