Wall clock time and date at job start Mon Mar 30 2020 00:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34900 * 117.00127 * 2 1 4 4 O 1.21620 * 119.99551 * 359.97438 * 3 2 1 5 5 C 1.46461 * 119.99871 * 180.02562 * 3 2 1 6 6 C 1.36648 * 125.99563 * 179.97438 * 5 3 2 7 7 C 1.40308 * 106.70306 * 180.02562 * 6 5 3 8 8 C 1.35176 * 107.12681 * 359.97438 * 7 6 5 9 9 C 1.50701 * 125.60915 * 180.26989 * 8 7 6 10 10 H 1.09003 * 109.46673 * 339.71271 * 9 8 7 11 11 C 1.52998 * 109.47333 * 99.71477 * 9 8 7 12 12 N 1.46896 * 109.47114 * 219.71636 * 9 8 7 13 13 C 1.46895 * 111.00030 * 154.99631 * 12 9 8 14 14 H 1.08994 * 109.47374 * 35.00305 * 13 12 9 15 15 C 1.52999 * 109.47421 * 274.99784 * 13 12 9 16 16 C 1.50710 * 109.47139 * 155.00238 * 13 12 9 17 17 H 1.07997 * 119.99430 * 359.97438 * 16 13 12 18 18 C 1.37873 * 120.00114 * 180.02562 * 16 13 12 19 19 N 1.31516 * 119.99926 * 359.97438 * 18 16 13 20 20 Si 1.86800 * 119.99925 * 179.97438 * 18 16 13 21 21 H 1.48496 * 109.47289 * 59.99459 * 20 18 16 22 22 H 1.48507 * 109.47026 * 179.97438 * 20 18 16 23 23 H 1.48506 * 109.46930 * 299.99198 * 20 18 16 24 24 O 1.33914 * 108.78037 * 0.02562 * 8 7 6 25 25 H 1.09002 * 109.47070 * 300.00493 * 1 2 3 26 26 H 1.09006 * 109.47167 * 60.00139 * 1 2 3 27 27 H 1.09000 * 109.47414 * 180.02562 * 1 2 3 28 28 H 1.07995 * 126.64505 * 0.05062 * 6 5 3 29 29 H 1.08000 * 126.43855 * 180.02562 * 7 6 5 30 30 H 1.08998 * 109.47039 * 179.97438 * 11 9 8 31 31 H 1.09002 * 109.47140 * 300.00332 * 11 9 8 32 32 H 1.08997 * 109.46790 * 59.99941 * 11 9 8 33 33 H 1.00907 * 110.99848 * 31.04702 * 12 9 8 34 34 H 1.09001 * 109.46910 * 60.00156 * 15 13 12 35 35 H 1.09003 * 109.47573 * 179.97438 * 15 13 12 36 36 H 1.09001 * 109.47590 * 300.00381 * 15 13 12 37 37 H 0.97002 * 119.99976 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0645 1.2020 0.0000 4 8 1.4020 2.2219 -0.0005 5 6 3.5271 1.2785 -0.0006 6 6 4.2713 2.4246 -0.0011 7 6 5.6180 2.0309 -0.0021 8 6 5.6376 0.6793 -0.0016 9 6 6.8754 -0.1803 0.0035 10 1 7.7250 0.4041 -0.3498 11 6 7.1501 -0.6706 1.4265 12 7 6.6734 -1.3349 -0.8818 13 6 7.9571 -1.8512 -1.3750 14 1 8.7140 -1.7455 -0.5979 15 6 8.3834 -1.0598 -2.6131 16 6 7.8079 -3.3067 -1.7362 17 1 6.8548 -3.7990 -1.6113 18 6 8.8884 -4.0100 -2.2249 19 7 10.0491 -3.4106 -2.3765 20 14 8.7035 -5.8144 -2.6719 21 1 7.6725 -5.9589 -3.7308 22 1 10.0013 -6.3362 -3.1706 23 1 8.2898 -6.5821 -1.4699 24 8 4.3762 0.2298 -0.0008 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 3.8956 3.4371 -0.0005 29 1 6.4775 2.6849 -0.0024 30 1 8.0451 -1.2927 1.4300 31 1 7.3000 0.1862 2.0835 32 1 6.3005 -1.2550 1.7797 33 1 6.0598 -1.1003 -1.6478 34 1 8.4914 -0.0070 -2.3520 35 1 9.3362 -1.4425 -2.9788 36 1 7.6265 -1.1655 -3.3904 37 1 10.8092 -3.9053 -2.7207 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602860346.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:29 Heat of formation + Delta-G solvation = -86.730320 kcal Electronic energy + Delta-G solvation = -20146.582181 eV Core-core repulsion = 16890.284498 eV Total energy + Delta-G solvation = -3256.297683 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.85362 -41.32345 -38.38144 -37.69738 -35.20446 -34.18689 -32.71422 -30.67215 -28.78075 -28.48320 -27.21372 -25.30662 -23.34652 -22.53282 -21.84641 -21.12424 -19.55325 -18.60442 -18.12836 -17.90017 -17.05157 -16.87487 -16.77013 -15.80268 -15.23838 -14.75406 -14.74391 -14.33781 -14.26025 -14.18087 -13.97865 -13.63619 -13.28927 -13.13721 -13.03065 -12.81096 -12.77561 -12.43441 -12.27516 -12.10877 -12.03916 -11.91929 -11.75029 -11.13373 -11.03224 -10.45210 -9.72606 -9.06613 -8.07957 -6.17722 -0.30659 1.15575 1.23645 1.45695 1.46345 1.54240 1.75179 1.92936 2.45921 3.20984 3.29480 3.55004 3.82587 3.89796 4.22843 4.25124 4.31027 4.35107 4.46131 4.60328 4.67173 4.74047 4.78918 4.87716 4.91339 4.94693 5.07529 5.13158 5.25169 5.34641 5.42078 5.70924 5.79051 5.85757 6.28237 6.47497 6.60125 6.72901 6.94147 7.51514 8.97284 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.023559 B = 0.004348 C = 0.003896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.196687 B = 6438.129695 C = 7184.994883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.361 6.361 3 C 0.558 3.442 4 O -0.509 6.509 5 C -0.106 4.106 6 C -0.087 4.087 7 C -0.216 4.216 8 C 0.042 3.958 9 C 0.155 3.845 10 H 0.082 0.918 11 C -0.132 4.132 12 N -0.682 5.682 13 C 0.217 3.783 14 H 0.018 0.982 15 C -0.159 4.159 16 C -0.515 4.515 17 H 0.051 0.949 18 C 0.013 3.987 19 N -0.919 5.919 20 Si 0.956 3.044 21 H -0.275 1.275 22 H -0.284 1.284 23 H -0.275 1.275 24 O -0.154 6.154 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.131 0.869 28 H 0.187 0.813 29 H 0.189 0.811 30 H 0.055 0.945 31 H 0.083 0.917 32 H 0.052 0.948 33 H 0.331 0.669 34 H 0.031 0.969 35 H 0.064 0.936 36 H 0.027 0.973 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.257 10.835 5.545 17.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.277 6.277 3 C 0.404 3.596 4 O -0.401 6.401 5 C -0.156 4.156 6 C -0.106 4.106 7 C -0.235 4.235 8 C -0.012 4.012 9 C 0.045 3.955 10 H 0.100 0.900 11 C -0.190 4.190 12 N -0.313 5.313 13 C 0.109 3.891 14 H 0.036 0.964 15 C -0.219 4.219 16 C -0.554 4.554 17 H 0.069 0.931 18 C -0.185 4.185 19 N -0.560 5.560 20 Si 0.782 3.218 21 H -0.200 1.200 22 H -0.209 1.209 23 H -0.200 1.200 24 O -0.049 6.049 25 H 0.091 0.909 26 H 0.089 0.911 27 H 0.149 0.851 28 H 0.204 0.796 29 H 0.207 0.793 30 H 0.074 0.926 31 H 0.101 0.899 32 H 0.071 0.929 33 H 0.149 0.851 34 H 0.050 0.950 35 H 0.083 0.917 36 H 0.046 0.954 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.467 10.292 6.018 17.250 hybrid contribution 0.203 -0.258 -1.040 1.091 sum -12.264 10.034 4.977 16.609 Atomic orbital electron populations 1.23699 0.73307 1.06136 1.03322 1.86706 1.26154 1.31351 1.83496 1.19217 0.85623 0.82160 0.72578 1.90899 1.64798 1.36270 1.48121 1.20953 0.88246 0.86972 1.19421 1.22264 0.92072 0.99088 0.97172 1.21958 0.98582 0.93448 1.09481 1.23368 0.83440 0.94629 0.99766 1.20358 0.88756 0.89662 0.96674 0.90037 1.21785 1.01963 1.01589 0.93633 1.60840 1.16070 1.31088 1.23345 1.19011 0.85484 0.93078 0.91534 0.96388 1.22279 1.02546 0.97019 1.00028 1.21379 0.96286 0.95907 1.41831 0.93097 1.25617 0.95009 1.02111 0.95779 1.69975 1.01342 1.37514 1.47124 0.85646 0.77074 0.80569 0.78496 1.20011 1.20932 1.20028 1.84162 1.15780 1.35029 1.69944 0.90883 0.91074 0.85107 0.79602 0.79342 0.92577 0.89868 0.92858 0.85142 0.94993 0.91687 0.95392 0.92975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.57 113.37 1.20 1.67 16 2 O -0.36 -9.60 10.58 -56.76 -0.60 -10.21 16 3 C 0.56 15.84 7.93 69.96 0.55 16.39 16 4 O -0.51 -15.01 16.66 19.44 0.32 -14.68 16 5 C -0.11 -3.07 7.18 24.04 0.17 -2.89 16 6 C -0.09 -2.04 10.62 22.40 0.24 -1.80 16 7 C -0.22 -5.04 10.76 22.07 0.24 -4.80 16 8 C 0.04 1.23 5.81 24.98 0.15 1.38 16 9 C 0.16 5.09 2.88 44.17 0.13 5.22 16 10 H 0.08 2.55 7.10 -2.39 -0.02 2.54 16 11 C -0.13 -4.07 9.38 71.98 0.68 -3.40 16 12 N -0.68 -28.13 6.02 -477.17 -2.87 -31.00 16 13 C 0.22 10.51 2.38 44.17 0.11 10.61 16 14 H 0.02 0.95 7.11 -2.39 -0.02 0.93 16 15 C -0.16 -7.33 8.92 71.98 0.64 -6.69 16 16 C -0.52 -28.19 8.84 25.60 0.23 -27.96 16 17 H 0.05 2.84 7.81 -2.91 -0.02 2.82 16 18 C 0.01 0.72 5.30 84.65 0.45 1.17 16 19 N -0.92 -51.65 11.32 21.45 0.24 -51.41 16 20 Si 0.96 43.64 29.54 68.60 2.03 45.67 16 21 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 22 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 23 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 24 O -0.15 -5.05 10.66 -4.89 -0.05 -5.11 16 25 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 27 H 0.13 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.19 3.37 8.06 -2.91 -0.02 3.35 16 29 H 0.19 3.20 8.06 -2.91 -0.02 3.18 16 30 H 0.06 1.92 7.43 -2.39 -0.02 1.90 16 31 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.33 13.54 8.09 -89.69 -0.73 12.81 16 34 H 0.03 1.25 7.43 -2.39 -0.02 1.24 16 35 H 0.06 3.36 6.07 -2.39 -0.01 3.35 16 36 H 0.03 1.24 8.13 -2.39 -0.02 1.22 16 37 H 0.26 14.05 8.31 -92.71 -0.77 13.28 16 Total: -1.00 -63.29 320.98 4.19 -59.09 By element: Atomic # 1 Polarization: 18.39 SS G_CDS: 0.35 Total: 18.74 kcal Atomic # 6 Polarization: -15.87 SS G_CDS: 4.77 Total: -11.10 kcal Atomic # 7 Polarization: -79.78 SS G_CDS: -2.63 Total: -82.41 kcal Atomic # 8 Polarization: -29.67 SS G_CDS: -0.33 Total: -30.00 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -63.29 4.19 -59.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602860346.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.637 kcal (2) G-P(sol) polarization free energy of solvation -63.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds