Wall clock time and date at job start Mon Mar 30 2020 00:39:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46761 * 124.35284 * 2 1 4 4 C 1.54473 * 105.47318 * 197.03428 * 3 2 1 5 5 H 1.09008 * 110.97139 * 92.70710 * 4 3 2 6 6 C 1.50697 * 111.00345 * 216.45255 * 4 3 2 7 7 O 1.20823 * 120.00140 * 356.89229 * 6 4 3 8 8 O 1.34232 * 120.00274 * 176.89416 * 6 4 3 9 9 C 1.45197 * 117.00294 * 180.02562 * 8 6 4 10 10 C 1.52994 * 109.47392 * 179.97438 * 9 8 6 11 11 C 1.50704 * 115.54895 * 65.10332 * 10 9 8 12 12 H 1.08005 * 119.99957 * 266.11342 * 11 10 9 13 13 C 1.37877 * 120.00236 * 86.11462 * 11 10 9 14 14 N 1.31515 * 119.99541 * 353.70372 * 13 11 10 15 15 Si 1.86792 * 120.00405 * 173.70741 * 13 11 10 16 16 H 1.48500 * 109.47218 * 59.99493 * 15 13 11 17 17 H 1.48502 * 109.47500 * 180.02562 * 15 13 11 18 18 H 1.48511 * 109.46815 * 299.99900 * 15 13 11 19 19 C 1.53000 * 117.49966 * 279.43778 * 10 9 8 20 20 C 1.52999 * 117.50306 * 210.77257 * 10 9 8 21 21 C 1.54631 * 101.76705 * 334.58911 * 4 3 2 22 22 C 1.34415 * 124.34711 * 180.02562 * 2 1 3 23 23 O 1.21290 * 124.94300 * 359.53353 * 22 2 1 24 24 H 1.08990 * 109.47624 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46960 * 299.95668 * 1 2 3 26 26 H 1.09011 * 109.46888 * 59.94686 * 1 2 3 27 27 H 1.08999 * 110.24306 * 78.03896 * 3 2 1 28 28 H 1.08996 * 110.24927 * 316.03802 * 3 2 1 29 29 H 1.08997 * 109.46895 * 299.99683 * 9 8 6 30 30 H 1.08998 * 109.47442 * 59.99371 * 9 8 6 31 31 H 0.97001 * 119.99808 * 179.97438 * 14 13 11 32 32 H 1.09000 * 117.49825 * 359.97438 * 19 10 9 33 33 H 1.08996 * 117.49877 * 145.02089 * 19 10 9 34 34 H 1.08993 * 117.50247 * 214.98085 * 20 10 9 35 35 H 1.09007 * 117.49646 * 0.02562 * 20 10 9 36 36 H 1.08996 * 110.48473 * 143.47482 * 21 4 3 37 37 H 1.09002 * 110.48200 * 266.11313 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2932 1.2116 0.0000 4 6 3.7009 0.7486 -0.4361 5 1 3.8265 0.8449 -1.5146 6 6 4.7723 1.5118 0.2990 7 8 4.4674 2.3956 1.0644 8 8 6.0656 1.2098 0.1036 9 6 7.0432 1.9857 0.8455 10 6 8.4513 1.5009 0.4953 11 6 8.8789 1.7233 -0.9326 12 1 8.7427 0.9414 -1.6651 13 6 9.4440 2.9248 -1.3039 14 7 9.4971 3.9196 -0.4453 15 14 10.1340 3.1399 -3.0264 16 1 9.0532 2.9287 -4.0225 17 1 10.6814 4.5126 -3.1726 18 1 11.2167 2.1490 -3.2531 19 6 8.9588 0.2392 1.1963 20 6 9.5257 1.6086 1.5793 21 6 3.6897 -0.7380 -0.0109 22 6 2.2234 -1.1098 -0.0005 23 8 1.7945 -2.2443 0.0071 24 1 -0.3634 -1.0275 -0.0005 25 1 -0.3633 0.5132 0.8904 26 1 -0.3633 0.5147 -0.8896 27 1 2.3310 1.6426 1.0005 28 1 1.8983 1.9384 -0.7099 29 1 6.9456 3.0392 0.5834 30 1 6.8714 1.8600 1.9145 31 1 9.8950 4.7649 -0.7064 32 1 8.2896 -0.2452 1.9074 33 1 9.6023 -0.4297 0.6249 34 1 10.5417 1.8400 1.2597 35 1 9.2291 2.0246 2.5422 36 1 4.2323 -1.3459 -0.7349 37 1 4.1197 -0.8534 0.9840 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744278673.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:48 Heat of formation + Delta-G solvation = -92.481230 kcal Electronic energy + Delta-G solvation = -20355.068609 eV Core-core repulsion = 17098.521548 eV Total energy + Delta-G solvation = -3256.547061 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.90062 -39.54480 -37.04689 -36.32476 -35.34164 -33.14430 -32.00750 -28.06901 -27.52654 -26.56879 -25.31682 -23.34931 -21.22888 -20.21934 -19.61752 -19.31229 -17.64403 -16.94885 -16.75529 -16.01126 -15.77002 -15.44077 -14.94305 -14.65638 -14.02292 -13.93305 -13.68266 -13.44461 -13.12120 -12.61590 -12.48543 -12.25384 -12.13672 -11.77243 -11.62726 -11.38701 -11.01137 -10.91256 -10.60493 -10.37050 -10.28272 -9.97184 -9.91975 -9.62022 -8.93580 -8.88855 -8.51506 -8.27176 -6.11965 -4.17598 2.40750 2.50830 2.70275 3.15148 3.27042 3.32204 3.34701 4.08446 4.23764 4.34940 4.68301 4.76062 5.05723 5.12322 5.14181 5.18501 5.31343 5.40497 5.44980 5.48022 5.68089 5.74527 5.89985 6.16962 6.24311 6.26097 6.44485 6.57413 6.68142 6.85072 6.98240 7.11291 7.30145 7.40891 7.81433 7.97034 8.20285 8.34398 8.84257 9.48690 10.97299 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.025763 B = 0.004483 C = 0.004323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.575755 B = 6244.147552 C = 6475.621044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.625 5.625 3 C 0.115 3.885 4 C -0.098 4.098 5 H 0.129 0.871 6 C 0.467 3.533 7 O -0.517 6.517 8 O -0.330 6.330 9 C 0.115 3.885 10 C 0.036 3.964 11 C -0.491 4.491 12 H 0.063 0.937 13 C 0.069 3.931 14 N -0.881 5.881 15 Si 0.893 3.107 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.276 1.276 19 C -0.205 4.205 20 C -0.144 4.144 21 C -0.140 4.140 22 C 0.521 3.479 23 O -0.532 6.532 24 H 0.083 0.917 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.093 0.907 28 H 0.089 0.911 29 H 0.077 0.923 30 H 0.040 0.960 31 H 0.262 0.738 32 H 0.066 0.934 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.065 0.935 36 H 0.119 0.881 37 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.915 -4.230 0.687 13.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.360 5.360 3 C -0.008 4.008 4 C -0.117 4.117 5 H 0.147 0.853 6 C 0.309 3.691 7 O -0.407 6.407 8 O -0.245 6.245 9 C 0.042 3.958 10 C 0.036 3.964 11 C -0.529 4.529 12 H 0.081 0.919 13 C -0.134 4.134 14 N -0.518 5.518 15 Si 0.720 3.280 16 H -0.201 1.201 17 H -0.213 1.213 18 H -0.201 1.201 19 C -0.242 4.242 20 C -0.181 4.181 21 C -0.181 4.181 22 C 0.309 3.691 23 O -0.409 6.409 24 H 0.101 0.899 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.111 0.889 28 H 0.107 0.893 29 H 0.096 0.904 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.085 0.915 33 H 0.100 0.900 34 H 0.106 0.894 35 H 0.084 0.916 36 H 0.137 0.863 37 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -13.201 -4.352 0.951 13.933 hybrid contribution 0.450 0.591 -0.798 1.090 sum -12.752 -3.761 0.154 13.296 Atomic orbital electron populations 1.21569 0.77764 1.03746 1.01698 1.48188 1.06710 1.07313 1.73754 1.22031 0.87805 0.86894 1.04090 1.21841 0.91995 0.95074 1.02821 0.85277 1.22842 0.84507 0.81722 0.80046 1.90634 1.83512 1.30863 1.35687 1.86524 1.14624 1.59251 1.64065 1.22980 0.86079 0.95262 0.91446 1.18775 0.87807 0.95560 0.94288 1.20348 1.40484 0.99850 0.92201 0.91868 1.25011 0.95420 0.95687 0.97276 1.69988 1.43814 1.02988 1.34993 0.86648 0.79567 0.77162 0.84588 1.20137 1.21278 1.20105 1.23020 1.04959 0.91776 1.04450 1.22541 0.99660 0.98083 0.97857 1.22300 0.94886 0.94839 1.06030 1.20854 0.89089 0.84339 0.74852 1.90725 1.78540 1.21003 1.50628 0.89854 0.91921 0.91892 0.88893 0.89274 0.90438 0.94144 0.92811 0.91522 0.90011 0.89378 0.91635 0.86254 0.87084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.78 11.14 59.85 0.67 1.44 16 2 N -0.62 -6.83 3.33 -180.30 -0.60 -7.43 16 3 C 0.11 1.20 6.69 -3.13 -0.02 1.18 16 4 C -0.10 -1.18 3.65 -90.14 -0.33 -1.51 16 5 H 0.13 1.34 8.14 -51.92 -0.42 0.92 16 6 C 0.47 7.83 7.18 36.00 0.26 8.09 16 7 O -0.52 -9.77 15.29 -18.75 -0.29 -10.06 16 8 O -0.33 -6.58 10.16 -39.26 -0.40 -6.98 16 9 C 0.12 2.58 5.29 37.15 0.20 2.77 16 10 C 0.04 0.86 1.62 -155.66 -0.25 0.61 16 11 C -0.49 -12.90 8.77 -34.44 -0.30 -13.20 16 12 H 0.06 1.66 7.82 -52.48 -0.41 1.25 16 13 C 0.07 1.83 5.38 -17.82 -0.10 1.74 16 14 N -0.88 -24.13 12.88 55.43 0.71 -23.41 16 15 Si 0.89 20.46 29.54 -169.99 -5.02 15.44 16 16 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 17 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 18 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 19 C -0.20 -4.29 9.96 -26.69 -0.27 -4.55 16 20 C -0.14 -3.23 9.37 -26.69 -0.25 -3.48 16 21 C -0.14 -1.66 6.41 -26.74 -0.17 -1.83 16 22 C 0.52 6.86 8.02 -10.87 -0.09 6.78 16 23 O -0.53 -8.77 17.35 5.55 0.10 -8.68 16 24 H 0.08 0.75 7.53 -51.93 -0.39 0.36 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.41 8.14 -51.92 -0.42 -0.01 16 27 H 0.09 1.07 7.01 -51.93 -0.36 0.71 16 28 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.08 1.92 8.13 -51.93 -0.42 1.50 16 30 H 0.04 0.85 8.08 -51.93 -0.42 0.43 16 31 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 32 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.08 1.69 8.14 -51.93 -0.42 1.26 16 34 H 0.09 2.09 8.14 -51.93 -0.42 1.67 16 35 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 36 H 0.12 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.11 1.32 7.89 -51.93 -0.41 0.91 16 LS Contribution 321.42 15.07 4.84 4.84 Total: -1.00 -30.89 321.42 -6.66 -37.56 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -5.36 Total: 0.67 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: -0.65 Total: -1.96 kcal Atomic # 7 Polarization: -30.95 SS G_CDS: 0.11 Total: -30.84 kcal Atomic # 8 Polarization: -25.13 SS G_CDS: -0.59 Total: -25.72 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.89 -6.66 -37.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744278673.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.925 kcal (2) G-P(sol) polarization free energy of solvation -30.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds