Wall clock time and date at job start Mon Mar 30 2020 00:39:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46761 * 124.35284 * 2 1 4 4 C 1.54473 * 105.47318 * 197.03428 * 3 2 1 5 5 H 1.09008 * 110.97139 * 92.70710 * 4 3 2 6 6 C 1.50697 * 111.00345 * 216.45255 * 4 3 2 7 7 O 1.20823 * 120.00140 * 356.89229 * 6 4 3 8 8 O 1.34232 * 120.00274 * 176.89416 * 6 4 3 9 9 C 1.45197 * 117.00294 * 180.02562 * 8 6 4 10 10 C 1.52994 * 109.47392 * 179.97438 * 9 8 6 11 11 C 1.50704 * 115.54895 * 65.10332 * 10 9 8 12 12 H 1.08005 * 119.99957 * 266.11342 * 11 10 9 13 13 C 1.37877 * 120.00236 * 86.11462 * 11 10 9 14 14 N 1.31515 * 119.99541 * 353.70372 * 13 11 10 15 15 Si 1.86792 * 120.00405 * 173.70741 * 13 11 10 16 16 H 1.48500 * 109.47218 * 59.99493 * 15 13 11 17 17 H 1.48502 * 109.47500 * 180.02562 * 15 13 11 18 18 H 1.48511 * 109.46815 * 299.99900 * 15 13 11 19 19 C 1.53000 * 117.49966 * 279.43778 * 10 9 8 20 20 C 1.52999 * 117.50306 * 210.77257 * 10 9 8 21 21 C 1.54631 * 101.76705 * 334.58911 * 4 3 2 22 22 C 1.34415 * 124.34711 * 180.02562 * 2 1 3 23 23 O 1.21290 * 124.94300 * 359.53353 * 22 2 1 24 24 H 1.08990 * 109.47624 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46960 * 299.95668 * 1 2 3 26 26 H 1.09011 * 109.46888 * 59.94686 * 1 2 3 27 27 H 1.08999 * 110.24306 * 78.03896 * 3 2 1 28 28 H 1.08996 * 110.24927 * 316.03802 * 3 2 1 29 29 H 1.08997 * 109.46895 * 299.99683 * 9 8 6 30 30 H 1.08998 * 109.47442 * 59.99371 * 9 8 6 31 31 H 0.97001 * 119.99808 * 179.97438 * 14 13 11 32 32 H 1.09000 * 117.49825 * 359.97438 * 19 10 9 33 33 H 1.08996 * 117.49877 * 145.02089 * 19 10 9 34 34 H 1.08993 * 117.50247 * 214.98085 * 20 10 9 35 35 H 1.09007 * 117.49646 * 0.02562 * 20 10 9 36 36 H 1.08996 * 110.48473 * 143.47482 * 21 4 3 37 37 H 1.09002 * 110.48200 * 266.11313 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2932 1.2116 0.0000 4 6 3.7009 0.7486 -0.4361 5 1 3.8265 0.8449 -1.5146 6 6 4.7723 1.5118 0.2990 7 8 4.4674 2.3956 1.0644 8 8 6.0656 1.2098 0.1036 9 6 7.0432 1.9857 0.8455 10 6 8.4513 1.5009 0.4953 11 6 8.8789 1.7233 -0.9326 12 1 8.7427 0.9414 -1.6651 13 6 9.4440 2.9248 -1.3039 14 7 9.4971 3.9196 -0.4453 15 14 10.1340 3.1399 -3.0264 16 1 9.0532 2.9287 -4.0225 17 1 10.6814 4.5126 -3.1726 18 1 11.2167 2.1490 -3.2531 19 6 8.9588 0.2392 1.1963 20 6 9.5257 1.6086 1.5793 21 6 3.6897 -0.7380 -0.0109 22 6 2.2234 -1.1098 -0.0005 23 8 1.7945 -2.2443 0.0071 24 1 -0.3634 -1.0275 -0.0005 25 1 -0.3633 0.5132 0.8904 26 1 -0.3633 0.5147 -0.8896 27 1 2.3310 1.6426 1.0005 28 1 1.8983 1.9384 -0.7099 29 1 6.9456 3.0392 0.5834 30 1 6.8714 1.8600 1.9145 31 1 9.8950 4.7649 -0.7064 32 1 8.2896 -0.2452 1.9074 33 1 9.6023 -0.4297 0.6249 34 1 10.5417 1.8400 1.2597 35 1 9.2291 2.0246 2.5422 36 1 4.2323 -1.3459 -0.7349 37 1 4.1197 -0.8534 0.9840 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000744278673.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:48 Heat of formation + Delta-G solvation = -110.471398 kcal Electronic energy + Delta-G solvation = -20355.848722 eV Core-core repulsion = 17098.521548 eV Total energy + Delta-G solvation = -3257.327174 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.03881 -40.84186 -38.65294 -37.52397 -36.89100 -34.07874 -33.98258 -29.26516 -28.66443 -27.81746 -27.15982 -24.48641 -22.95017 -21.45053 -21.17041 -20.60115 -18.86043 -18.43894 -17.94667 -17.50897 -17.10137 -16.70345 -16.46445 -16.15764 -15.59712 -14.91037 -14.80542 -14.64519 -14.52579 -13.92121 -13.66450 -13.54514 -13.38086 -13.16640 -12.90883 -12.78782 -12.61889 -12.45442 -12.36106 -12.07197 -11.71126 -11.65410 -11.40259 -11.01480 -10.75667 -10.46263 -10.06692 -9.81253 -8.11777 -6.22685 1.15282 1.41227 1.45081 1.46430 1.53536 1.60011 2.05280 2.44497 3.08583 3.17818 3.26531 3.44914 3.71623 3.76084 4.09012 4.16556 4.36820 4.41258 4.41522 4.50184 4.55022 4.65239 4.67572 4.76484 4.84306 4.87054 4.87660 4.99403 5.21236 5.41480 5.47845 5.60406 5.69933 5.77300 5.93354 6.37921 6.77163 6.82717 7.00134 7.46276 8.96763 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.025763 B = 0.004483 C = 0.004323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.575755 B = 6244.147552 C = 6475.621044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.619 5.619 3 C 0.119 3.881 4 C -0.087 4.087 5 H 0.153 0.847 6 C 0.466 3.534 7 O -0.539 6.539 8 O -0.340 6.340 9 C 0.128 3.872 10 C 0.005 3.995 11 C -0.504 4.504 12 H 0.056 0.944 13 C 0.025 3.975 14 N -0.909 5.909 15 Si 0.950 3.050 16 H -0.271 1.271 17 H -0.287 1.287 18 H -0.271 1.271 19 C -0.178 4.178 20 C -0.148 4.148 21 C -0.137 4.137 22 C 0.517 3.483 23 O -0.571 6.571 24 H 0.072 0.928 25 H 0.078 0.922 26 H 0.087 0.913 27 H 0.084 0.916 28 H 0.117 0.883 29 H 0.044 0.956 30 H 0.051 0.949 31 H 0.261 0.739 32 H 0.092 0.908 33 H 0.084 0.916 34 H 0.068 0.932 35 H 0.077 0.923 36 H 0.129 0.871 37 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.915 -4.588 -0.024 14.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.352 5.352 3 C -0.003 4.003 4 C -0.107 4.107 5 H 0.171 0.829 6 C 0.310 3.690 7 O -0.430 6.430 8 O -0.255 6.255 9 C 0.055 3.945 10 C 0.004 3.996 11 C -0.542 4.542 12 H 0.075 0.925 13 C -0.175 4.175 14 N -0.547 5.547 15 Si 0.776 3.224 16 H -0.196 1.196 17 H -0.212 1.212 18 H -0.196 1.196 19 C -0.215 4.215 20 C -0.186 4.186 21 C -0.177 4.177 22 C 0.306 3.694 23 O -0.451 6.451 24 H 0.091 0.909 25 H 0.097 0.903 26 H 0.105 0.895 27 H 0.102 0.898 28 H 0.135 0.865 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.110 0.890 33 H 0.102 0.898 34 H 0.086 0.914 35 H 0.096 0.904 36 H 0.147 0.853 37 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -14.224 -4.697 0.238 14.982 hybrid contribution 0.695 0.712 -0.541 1.133 sum -13.530 -3.985 -0.303 14.107 Atomic orbital electron populations 1.21796 0.76066 1.03743 1.03702 1.48310 1.07818 1.06726 1.72368 1.22069 0.86828 0.86987 1.04425 1.21910 0.90956 0.94415 1.03388 0.82923 1.23679 0.84034 0.81572 0.79690 1.90626 1.83535 1.32063 1.36759 1.86521 1.15847 1.59018 1.64143 1.22537 0.86369 0.93541 0.92090 1.18889 0.88786 0.98208 0.93707 1.20609 1.40393 0.99693 0.93484 0.92540 1.25680 0.95799 0.95490 1.00550 1.70094 1.44721 1.03253 1.36595 0.85741 0.79003 0.76983 0.80707 1.19581 1.21241 1.19636 1.23023 1.04120 0.90776 1.03596 1.22474 0.98378 0.99682 0.98023 1.22290 0.94418 0.94659 1.06308 1.20990 0.89677 0.84220 0.74531 1.90706 1.79166 1.22517 1.52761 0.90871 0.90306 0.89496 0.89757 0.86453 0.93796 0.93103 0.93027 0.88981 0.89762 0.91363 0.90412 0.85253 0.87273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.23 11.14 127.77 1.42 2.65 16 2 N -0.62 -12.09 3.33 -842.93 -2.81 -14.89 16 3 C 0.12 2.18 6.69 86.83 0.58 2.76 16 4 C -0.09 -1.91 3.65 -10.48 -0.04 -1.95 16 5 H 0.15 2.69 8.14 -2.38 -0.02 2.67 16 6 C 0.47 15.09 7.18 71.23 0.51 15.60 16 7 O -0.54 -19.97 15.29 21.97 0.34 -19.63 16 8 O -0.34 -13.30 10.16 -51.44 -0.52 -13.83 16 9 C 0.13 5.73 5.29 71.98 0.38 6.11 16 10 C 0.00 0.21 1.62 -52.93 -0.09 0.13 16 11 C -0.50 -26.47 8.77 25.60 0.22 -26.25 16 12 H 0.06 2.96 7.82 -2.91 -0.02 2.94 16 13 C 0.03 1.34 5.38 84.65 0.46 1.79 16 14 N -0.91 -50.37 12.88 21.45 0.28 -50.10 16 15 Si 0.95 41.87 29.54 68.60 2.03 43.90 16 16 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 17 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 18 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 19 C -0.18 -7.18 9.96 30.62 0.30 -6.87 16 20 C -0.15 -6.59 9.37 30.62 0.29 -6.31 16 21 C -0.14 -3.00 6.41 30.59 0.20 -2.80 16 22 C 0.52 12.87 8.02 87.90 0.71 13.58 16 23 O -0.57 -18.48 17.35 -3.06 -0.05 -18.53 16 24 H 0.07 1.22 7.53 -2.39 -0.02 1.20 16 25 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.09 0.84 8.14 -2.38 -0.02 0.82 16 27 H 0.08 1.76 7.01 -2.39 -0.02 1.74 16 28 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.04 2.22 8.13 -2.39 -0.02 2.20 16 30 H 0.05 2.11 8.08 -2.39 -0.02 2.09 16 31 H 0.26 13.90 8.31 -92.71 -0.77 13.13 16 32 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16 33 H 0.08 3.33 8.14 -2.39 -0.02 3.32 16 34 H 0.07 3.27 8.14 -2.39 -0.02 3.25 16 35 H 0.08 3.21 8.14 -2.38 -0.02 3.19 16 36 H 0.13 2.58 8.14 -2.39 -0.02 2.56 16 37 H 0.11 2.45 7.89 -2.39 -0.02 2.43 16 Total: -1.00 -66.43 321.42 5.26 -61.17 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: 1.06 Total: 13.46 kcal Atomic # 6 Polarization: -6.49 SS G_CDS: 4.95 Total: -1.54 kcal Atomic # 7 Polarization: -62.46 SS G_CDS: -2.53 Total: -64.99 kcal Atomic # 8 Polarization: -51.75 SS G_CDS: -0.24 Total: -51.99 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.90 kcal Total: -66.43 5.26 -61.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744278673.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.306 kcal (2) G-P(sol) polarization free energy of solvation -66.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds