Wall clock time and date at job start Mon Mar 30 2020 00:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09008 * 110.50164 * 2 1 4 4 C 1.54980 * 110.57341 * 122.74905 * 2 1 3 5 5 C 1.54887 * 102.33416 * 155.65414 * 4 2 1 6 6 C 1.51851 * 104.43242 * 322.37916 * 5 4 2 7 7 C 1.33084 * 126.33843 * 203.76929 * 6 5 4 8 8 C 1.46946 * 120.00088 * 0.02562 * 7 6 5 9 9 O 1.21530 * 120.00177 * 359.97438 * 8 7 6 10 10 O 1.34804 * 119.99944 * 180.02562 * 8 7 6 11 11 C 1.45199 * 117.00041 * 179.97438 * 10 8 7 12 12 C 1.50697 * 109.46940 * 179.97438 * 11 10 8 13 13 O 1.21293 * 120.00091 * 0.02562 * 12 11 10 14 14 N 1.34776 * 120.00046 * 180.02562 * 12 11 10 15 15 C 1.37091 * 120.00472 * 179.97438 * 14 12 11 16 16 H 1.08006 * 119.99961 * 0.02562 * 15 14 12 17 17 C 1.38948 * 120.00659 * 179.97438 * 15 14 12 18 18 N 1.31417 * 119.99504 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00383 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.46968 * 60.00633 * 19 17 15 21 21 H 1.48499 * 109.47165 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47246 * 300.00583 * 19 17 15 23 23 C 1.51442 * 107.31621 * 24.02795 * 6 5 4 24 24 H 1.08993 * 109.47145 * 297.24253 * 1 2 3 25 25 H 1.08998 * 109.47201 * 57.24992 * 1 2 3 26 26 H 1.09000 * 109.46277 * 177.25015 * 1 2 3 27 27 H 1.09000 * 110.83026 * 37.44260 * 4 2 1 28 28 H 1.08996 * 110.83347 * 273.86921 * 4 2 1 29 29 H 1.08994 * 110.44604 * 203.64337 * 5 4 2 30 30 H 1.08994 * 110.54622 * 81.16554 * 5 4 2 31 31 H 1.08000 * 119.99336 * 180.02562 * 7 6 5 32 32 H 1.08993 * 109.47328 * 300.00270 * 11 10 8 33 33 H 1.09003 * 109.46822 * 59.99962 * 11 10 8 34 34 H 0.97008 * 120.00111 * 0.02562 * 14 12 11 35 35 H 0.97006 * 119.99770 * 179.97438 * 18 17 15 36 36 H 1.09002 * 109.98378 * 118.75192 * 23 6 5 37 37 H 1.09003 * 109.98992 * 240.05362 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9119 1.0210 0.0000 4 6 2.0747 -0.7849 1.2203 5 6 3.4816 -1.2150 0.7360 6 6 3.2913 -1.5452 -0.7339 7 6 4.0547 -2.3529 -1.4660 8 6 5.2109 -3.0239 -0.8558 9 8 5.4702 -2.8409 0.3173 10 8 5.9844 -3.8416 -1.5975 11 6 7.1098 -4.4701 -0.9290 12 6 7.8527 -5.3419 -1.9083 13 8 7.4715 -5.4250 -3.0567 14 7 8.9406 -6.0293 -1.5079 15 6 9.6162 -6.8229 -2.3986 16 1 9.2768 -6.8969 -3.4213 17 6 10.7382 -7.5312 -1.9861 18 7 11.1515 -7.4407 -0.7418 19 14 11.6582 -8.6130 -3.1995 20 1 12.1529 -7.7825 -4.3268 21 1 12.8090 -9.2560 -2.5157 22 1 10.7440 -9.6608 -3.7206 23 6 2.0757 -0.7802 -1.2141 24 1 -0.3633 0.4704 0.9136 25 1 -0.3633 0.5559 -0.8643 26 1 -0.3632 -1.0265 -0.0493 27 1 1.4536 -1.6559 1.4295 28 1 2.1466 -0.1395 2.0957 29 1 3.8201 -2.0949 1.2830 30 1 4.1931 -0.3977 0.8535 31 1 3.8244 -2.5152 -2.5086 32 1 7.7801 -3.7011 -0.5453 33 1 6.7465 -5.0807 -0.1024 34 1 9.2453 -5.9632 -0.5893 35 1 11.9345 -7.9354 -0.4537 36 1 2.3602 -0.0883 -2.0068 37 1 1.3187 -1.4743 -1.5790 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000754196419.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:24:56 Heat of formation + Delta-G solvation = -125.183720 kcal Electronic energy + Delta-G solvation = -19331.114691 eV Core-core repulsion = 16073.149543 eV Total energy + Delta-G solvation = -3257.965148 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.24015 -38.78251 -37.98042 -35.96474 -33.96581 -32.99426 -31.35025 -30.15534 -28.63872 -27.38504 -24.81249 -24.07890 -21.67162 -20.35703 -19.54517 -18.63505 -18.02601 -17.42459 -16.38227 -16.15323 -15.80447 -15.14866 -14.91903 -14.44967 -14.05407 -13.92345 -13.82010 -13.40621 -13.18481 -12.85266 -12.41055 -12.17430 -12.01789 -11.87840 -11.59721 -11.41518 -11.18379 -11.09127 -11.06765 -10.83628 -10.47042 -10.32068 -10.27582 -10.00123 -9.56973 -9.31602 -8.48207 -8.05422 -6.47309 -3.89251 1.12630 2.83867 3.07774 3.17598 3.24300 3.29455 3.77751 4.08613 4.20455 4.33817 4.55064 4.76691 4.81141 5.08196 5.12868 5.14583 5.17976 5.22693 5.28222 5.36425 5.48224 5.56155 5.59373 5.73554 5.75456 5.77284 5.84291 5.94645 6.06956 6.08820 6.21616 6.31973 6.76112 7.50072 7.92772 8.04530 8.52026 9.09829 9.42519 9.92925 10.69961 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.068235 B = 0.002815 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 410.249003 B = 9943.782808 C =10272.017897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.099 4.099 3 H 0.078 0.922 4 C -0.122 4.122 5 C -0.108 4.108 6 C -0.026 4.026 7 C -0.191 4.191 8 C 0.494 3.506 9 O -0.518 6.518 10 O -0.323 6.323 11 C 0.062 3.938 12 C 0.439 3.561 13 O -0.576 6.576 14 N -0.554 5.554 15 C -0.302 4.302 16 H 0.105 0.895 17 C 0.024 3.976 18 N -0.898 5.898 19 Si 0.935 3.065 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.272 1.272 23 C -0.098 4.098 24 H 0.057 0.943 25 H 0.055 0.945 26 H 0.057 0.943 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.099 0.901 30 H 0.087 0.913 31 H 0.143 0.857 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.395 0.605 35 H 0.274 0.726 36 H 0.085 0.915 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.268 13.707 4.264 22.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.117 4.117 3 H 0.097 0.903 4 C -0.160 4.160 5 C -0.145 4.145 6 C -0.027 4.027 7 C -0.210 4.210 8 C 0.340 3.660 9 O -0.410 6.410 10 O -0.237 6.237 11 C -0.016 4.016 12 C 0.224 3.776 13 O -0.460 6.460 14 N -0.191 5.191 15 C -0.431 4.431 16 H 0.123 0.877 17 C -0.178 4.178 18 N -0.539 5.539 19 Si 0.762 3.238 20 H -0.198 1.198 21 H -0.209 1.209 22 H -0.198 1.198 23 C -0.134 4.134 24 H 0.076 0.924 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.118 0.882 30 H 0.106 0.894 31 H 0.161 0.839 32 H 0.104 0.896 33 H 0.104 0.896 34 H 0.228 0.772 35 H 0.084 0.916 36 H 0.104 0.896 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -17.250 13.580 3.917 22.301 hybrid contribution 0.859 -0.556 0.111 1.029 sum -16.391 13.025 4.028 21.320 Atomic orbital electron populations 1.21809 0.94563 1.02036 1.01798 1.22007 0.95764 0.99372 0.94564 0.90328 1.22668 0.95994 0.99901 0.97433 1.21813 0.97103 1.03331 0.92235 1.22991 0.92901 0.90635 0.96160 1.21193 0.95888 1.02456 1.01462 1.21450 0.82830 0.77035 0.84644 1.90779 1.70898 1.62088 1.17280 1.86648 1.38685 1.55992 1.42419 1.22706 0.86646 0.96821 0.95409 1.19352 0.84085 0.85346 0.88844 1.90559 1.68497 1.67545 1.19402 1.41700 1.23819 1.40234 1.13356 1.19676 1.07591 1.21312 0.94555 0.87693 1.25312 0.97269 0.98310 0.96915 1.69613 1.25856 1.42554 1.15860 0.85852 0.78584 0.79730 0.79681 1.19763 1.20889 1.19767 1.21439 0.94881 0.98544 0.98576 0.92438 0.92574 0.92432 0.91079 0.91001 0.88239 0.89449 0.83946 0.89606 0.89620 0.77155 0.91609 0.89649 0.89506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.82 9.15 37.16 0.34 -0.48 16 2 C -0.10 -0.67 3.48 -88.90 -0.31 -0.98 16 3 H 0.08 0.50 8.14 -51.92 -0.42 0.08 16 4 C -0.12 -0.96 6.38 -24.69 -0.16 -1.12 16 5 C -0.11 -1.14 5.41 -26.32 -0.14 -1.29 16 6 C -0.03 -0.28 6.15 -100.21 -0.62 -0.90 16 7 C -0.19 -2.48 10.06 -37.85 -0.38 -2.86 16 8 C 0.49 8.29 7.90 34.26 0.27 8.56 16 9 O -0.52 -9.16 13.55 -19.29 -0.26 -9.42 16 10 O -0.32 -6.39 9.77 -47.46 -0.46 -6.85 16 11 C 0.06 1.23 5.96 36.00 0.21 1.44 16 12 C 0.44 10.90 7.86 -10.99 -0.09 10.81 16 13 O -0.58 -16.45 16.08 -14.11 -0.23 -16.68 16 14 N -0.55 -14.30 5.29 -10.97 -0.06 -14.36 16 15 C -0.30 -8.47 9.68 -14.94 -0.14 -8.61 16 16 H 0.11 3.06 7.16 -52.48 -0.38 2.68 16 17 C 0.02 0.65 5.50 -17.47 -0.10 0.55 16 18 N -0.90 -24.38 13.05 55.50 0.72 -23.65 16 19 Si 0.93 20.94 29.55 -169.99 -5.02 15.92 16 20 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 21 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 22 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 23 C -0.10 -0.75 6.21 -26.85 -0.17 -0.92 16 24 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 25 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.06 0.33 8.08 -51.93 -0.42 -0.09 16 27 H 0.07 0.56 8.05 -51.93 -0.42 0.14 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.10 1.27 6.27 -51.93 -0.33 0.94 16 30 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.14 1.63 8.06 -52.49 -0.42 1.20 16 32 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 33 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 34 H 0.39 9.65 7.90 -40.82 -0.32 9.33 16 35 H 0.27 7.02 8.31 -40.82 -0.34 6.69 16 36 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.09 0.60 7.79 -51.93 -0.40 0.20 16 LS Contribution 319.08 15.07 4.81 4.81 Total: -1.00 -32.23 319.08 -6.98 -39.21 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -5.20 Total: 6.80 kcal Atomic # 6 Polarization: 5.50 SS G_CDS: -1.27 Total: 4.22 kcal Atomic # 7 Polarization: -38.68 SS G_CDS: 0.67 Total: -38.01 kcal Atomic # 8 Polarization: -32.00 SS G_CDS: -0.95 Total: -32.95 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -32.23 -6.98 -39.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754196419.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.972 kcal (2) G-P(sol) polarization free energy of solvation -32.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds